Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001216

Physical Location & Seq

Genomic Coordinates Reverse (-)

3872292 .. 3873311

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0054700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTGCTTGATATATTCCTCCACCCCACAGTTCCTGCGGTGCTGCTGGGGATCTTTCTAATTGGGAAGGATATTCCAAGGATAATGGAGGGAAACATTCATGTCTCAGGATCTAGACACTTGGGCGGCGCTGCAGTAGCAGCCATAGCCTGGGTACGACTTCGGATGGGGCTTCGGGTTTCTGCAGGTTCTATACATAACTTCAAATCACTTGCGTCCTCTCTTATCCTGGACATGAATACTGTTGTTTCATACATTACACCAGATACCTGGCAGTCAAATCTATCATGCCTTTCGAGCTTGAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0009705 GO:0015698 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 SPX

Protein Analysis

103

Amino Acids

11.11

Weight (kDa)

9.62

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT4G11810 AT4G11810 AT4G11810 AT4G22990 AT4G22990 AT4G22990
fragaria_vesca	FvH4_5g01390 FvH4_7g12920 FvH4_7g12920 FvH4_7g12920
malus_domestica	MD02G1195400.v1.1 MD04G1068900.v1.1 MD06G1069900.v1.1
prunus_persica	Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1
pyrus_communis	pycom02g15930 pycom04g06270 pycom06g07090
rosa_chinensis	RchiOBHm_Chr1g0352001 RchiOBHm_Chr7g0199491
rosa_laevigata	RLG00000003789 RLG00000028368
rosa_multiflora	Rmu_sc0003549.1_g000001 Rmu_sc0004009.1_g000006 Rmu_sc0007728.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256680 Rroxscaffold_4G00303360
rosa_rugosa	Rorug01G0223300 Rorug01G0223400 Rorug07G0054600 Rorug07G0054700 Rorug07G0054800 Rorug07G0054900
rosa_samantha	Rh1AG237400 Rh1BG207600 Rh1CG221800 Rh1DG234600 Rh7AG179600 Rh7BG182900 Rh7CG188200 Rh7DG182300
rosa_wichuraiana	Rw1G020650 Rw7G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	150
AciI	CCGC	2 cut(s)	38, 126
AclWI	GGATC	2 cut(s)	59, 118
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	205, 304
AjnI	CCWGG	3 cut(s)	149, 228, 269
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	59, 118
AlwNI	CAGNNNCTG	1 cut(s)	35
ApeKI	GCWGC	3 cut(s)	43, 131, 140
AspLEI	GCGC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	30, 118, 152
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	3 cut(s)	151, 230, 271
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	132, 183
BfoI	RGCGCY	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	4 cut(s)	44, 127, 132, 141
BlsI	GCNGC	4 cut(s)	45, 128, 133, 142
Bme1390I	CCNGG	3 cut(s)	151, 230, 271
BmrFI	CCNGG	3 cut(s)	151, 230, 271
BsaJI	CCNNGG	2 cut(s)	77, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
BseBI	CCWGG	3 cut(s)	151, 230, 271
BseDI	CCNNGG	2 cut(s)	77, 150
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	30, 118, 152
BseYI	CCCAGC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	51, 110
BspACI	CCGC	2 cut(s)	38, 126
BspCNI	CTCAG	1 cut(s)	119
BspMAI	CTGCAG	2 cut(s)	136, 187
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	59, 118
BssECI	CCNNGG	2 cut(s)	77, 150
BssMI	GATC	2 cut(s)	51, 110
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	3 cut(s)	151, 230, 271
Bst4CI	ACNGT	2 cut(s)	31, 244
BstDEI	CTNAG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	54, 113
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	51, 110
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 140, 146, 297
BstNI	CCWGG	3 cut(s)	151, 230, 271
BstSCI	CCNGG	3 cut(s)	149, 228, 269
BstSFI	CTRYAG	2 cut(s)	132, 183
BstV1I	GCAGC	3 cut(s)	30, 118, 152
BstX2I	RGATCY	2 cut(s)	51, 110
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	2 cut(s)	51, 110
BtsCI	GGATG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	131
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	3 cut(s)	101, 235, 288
CviJI	RGCY	4 cut(s)	143, 149, 172, 300
CviKI_1	RGCY	4 cut(s)	143, 149, 172, 300
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	53, 112
DpnII	GATC	2 cut(s)	51, 110
Eco130I	CCWWGG	1 cut(s)	77
EcoRII	CCWGG	3 cut(s)	149, 228, 269
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	3 cut(s)	104, 238, 291
FaiI	YATR	8 cut(s)	14, 102, 146, 194, 198, 236, 253, 289
FatI	CATG	3 cut(s)	100, 234, 287
Fnu4HI	GCNGC	4 cut(s)	44, 127, 132, 141
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	44, 127, 132, 141
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	4 cut(s)	44, 127, 132, 141
GsaI	CCCAGC	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	132
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	104, 238, 291
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	108, 114
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	31, 244
HpyCH4V	TGCA	2 cut(s)	134, 185
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 140, 146, 297
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	3 cut(s)	104, 238, 291
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	51, 110
Lsp1109I	GCAGC	3 cut(s)	30, 118, 152
MaeI	CTAG	1 cut(s)	114
MalI	GATC	2 cut(s)	53, 112
MboI	GATC	2 cut(s)	51, 110
MflI	RGATCY	2 cut(s)	51, 110
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	3 cut(s)	29, 82, 229
MspR9I	CCNGG	3 cut(s)	151, 230, 271
MvaI	CCWGG	3 cut(s)	151, 230, 271
MwoI	GCNNNNNNNGC	4 cut(s)	137, 140, 146, 297
NdeII	GATC	2 cut(s)	51, 110
NlaIII	CATG	3 cut(s)	104, 238, 291
PflMI	CCANNNNNTGG	1 cut(s)	150
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	45, 128, 133, 142
Psp6I	CCWGG	3 cut(s)	149, 228, 269
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	3 cut(s)	149, 228, 269
PstI	CTGCAG	2 cut(s)	136, 187
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	51, 110
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SatI	GCNGC	4 cut(s)	44, 127, 132, 141
Sau3AI	GATC	2 cut(s)	51, 110
ScrFI	CCNGG	3 cut(s)	151, 230, 271
SetI	ASST	3 cut(s)	190, 272, 302
SfcI	CTRYAG	2 cut(s)	132, 183
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	38, 126
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	149, 228, 269
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	31, 244
TaqI	TCGA	1 cut(s)	296
TasI	AATT	1 cut(s)	60
TauI	GCSGC	1 cut(s)	129
TseI	GCWGC	3 cut(s)	43, 131, 140
TspDTI	ATGAA	3 cut(s)	89, 240, 251
Van91I	CCANNNNNTGG	1 cut(s)	150
XbaI	TCTAGA	1 cut(s)	113
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.