Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010500

Physical Location & Seq

Genomic Coordinates Forward (+)

22955326 .. 22957347

Gene Structure 2022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGGAACCATCGGTTGTTTTGGCTACCCAAATTTTGGACGGAACACCTCTACGCCCTGGTGGCAAGGTTCTTATGTCGGTCACCCAAGCTAAGTTTCAGCAGAAAGGGGACACATTTGTTACCAAACAAGCAGACAACAAGAGGAAAAAGAAACTTAAGAAAGTGGAAGAGAAGATACTTGGCTGGGCCGGCCATGACGATGGAAAGGTGTCAATTCCAGCTACTGTTATTCTTCGCTACATGTTCACTCCTGCTGAAATGAGGGCAGATGAAAATTTAGGTCCAGAATTGCAGGCGGATGTTCAGGAGGAATGTGTGAAGCTTGGTCCAGTGGACTCAGTGAAGGTTTGTGAGAATCATCCCCAGGGAGTTGTTTTGGTCAGATTCAAGGATAGGAATGATGCTCAGAAGTGCATAGAAATGATGAATGGGCGATGGTTTGGCGGTAGACAAGTACATGCAAGTGAGGATGATGGTTTAGTTAACCATGCTTCTGTCCGGAATCTGGATGAGGATGCTGCAAGGTTAGAGCAGTTTGGTGCCGAACTTGAAGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 RRM_1

Protein Analysis

188

Amino Acids

20.78

Weight (kDa)

5.88

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	100 - 154	2.4e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16260
fragaria_vesca	FvH4_6g00060
malus_domestica	MD00G1017100.v1.1 MD12G1261400.v1.1
prunus_persica	Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1
pyrus_communis	pycom02g06260 pycom04g22010 pycom04g22020 pycom12g24240
rosa_chinensis	RchiOBHm_Chr3g0447391
rosa_laevigata	RLG00000026003
rosa_multiflora	Rmu_ssc0000473.1_g000016
rosa_roxburghii	Rroxscaffold_6G00425590
rosa_rugosa	Rorug02G0601100
rosa_samantha	Rh3AG001200 Rh3BG000900 Rh3CG000900 Rh3DG001100
rosa_wichuraiana	Rw3G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	542
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	2 cut(s)	299, 447
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	33, 277
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	2 cut(s)	37, 508
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	391, 554
AjnI	CCWGG	2 cut(s)	58, 366
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	4 cut(s)	92, 224, 325, 557
AluI	AGCT	4 cut(s)	92, 224, 325, 557
AlwNI	CAGNNNCTG	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	501
AoxI	GGCC	2 cut(s)	189, 193
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	2 cut(s)	33, 277
AspS9I	GGNCC	3 cut(s)	189, 284, 329
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	284, 329
BanI	GGYRCC	1 cut(s)	542
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	4 cut(s)	19, 197, 432, 470
BciT130I	CCWGG	2 cut(s)	60, 368
BfrI	CTTAAG	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	2 cut(s)	60, 368
Bme18I	GGWCC	2 cut(s)	284, 329
BmgT120I	GGNCC	3 cut(s)	189, 284, 329
BmiI	GGNNCC	2 cut(s)	9, 544
BmrFI	CCNGG	2 cut(s)	60, 368
BmsI	GCATC	2 cut(s)	394, 508
BsaJI	CCNNGG	3 cut(s)	58, 366, 367
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 508
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	332
BseAI	TCCGGA	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	60, 368
BseDI	CCNNGG	3 cut(s)	58, 366, 367
BseGI	GGATG	5 cut(s)	307, 361, 478, 517, 523
BseLI	CCNNNNNNNGG	2 cut(s)	37, 508
BseMII	CTCAG	2 cut(s)	354, 422
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	191, 195
BshNI	GGYRCC	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	192, 502
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	37, 508
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	191, 195
Bsp13I	TCCGGA	1 cut(s)	501
BspACI	CCGC	2 cut(s)	299, 447
BspANI	GGCC	2 cut(s)	191, 195
BspCNI	CTCAG	2 cut(s)	353, 421
BspEI	TCCGGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	9, 544
BspT107I	GGYRCC	1 cut(s)	542
BspTI	CTTAAG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	58, 366, 367
Bst2UI	CCWGG	2 cut(s)	60, 368
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	193, 297
BstDEI	CTNAG	3 cut(s)	93, 340, 408
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	5 cut(s)	307, 361, 478, 517, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 192
BstNI	CCWGG	2 cut(s)	60, 368
BstNSI	RCATGY	2 cut(s)	247, 464
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	58, 366
BstV1I	GCAGC	1 cut(s)	508
BstXI	CCANNNNNNTGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	191, 195
BtgZI	GCGATG	1 cut(s)	451
BtsCI	GGATG	5 cut(s)	307, 361, 478, 517, 523
BtsIMutI	CAGTG	2 cut(s)	339, 348
Cac8I	GCNNGC	2 cut(s)	193, 297
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	189, 284, 329
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	4 cut(s)	197, 244, 461, 491
CviJI	RGCY	8 cut(s)	26, 92, 186, 191, 195, 224, 325, 557
CviKI_1	RGCY	8 cut(s)	26, 92, 186, 191, 195, 224, 325, 557
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	3 cut(s)	93, 340, 408
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	284, 329
Eco91I	GGTNACC	1 cut(s)	82
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	58, 366
FaeI	CATG	4 cut(s)	200, 247, 464, 494
FaiI	YATR	6 cut(s)	77, 198, 245, 419, 462, 492
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	4 cut(s)	196, 243, 460, 490
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	5 cut(s)	314, 348, 485, 524, 530
FseI	GGCCGGCC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	522
GluI	GCNGC	1 cut(s)	522
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	191, 195
HapII	CCGG	2 cut(s)	192, 502
Hin1II	CATG	4 cut(s)	200, 247, 464, 494
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	4 cut(s)	338, 358, 387, 505
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	2 cut(s)	192, 502
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	4 cut(s)	249, 337, 452, 487
Hpy188I	TCNGA	2 cut(s)	386, 411
Hpy188III	TCNNGA	4 cut(s)	287, 308, 502, 509
Hpy8I	GTNNAC	4 cut(s)	249, 337, 452, 487
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	295, 417, 464, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 192
HpyF3I	CTNAG	3 cut(s)	93, 340, 408
Hsp92II	CATG	4 cut(s)	200, 247, 464, 494
Kpn2I	TCCGGA	1 cut(s)	501
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	487
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	2 cut(s)	394, 508
MaeIII	GTNAC	2 cut(s)	82, 121
MboII	GAAGA	3 cut(s)	182, 187, 227
MluCI	AATT	4 cut(s)	33, 216, 277, 290
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	60, 138, 258, 304, 463, 508
MroI	TCCGGA	1 cut(s)	501
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	2 cut(s)	159, 486
MslI	CAYNNNNRTG	3 cut(s)	201, 422, 465
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	2 cut(s)	192, 502
MspR9I	CCNGG	2 cut(s)	60, 368
MvaI	CCWGG	2 cut(s)	60, 368
MwoI	GCNNNNNNNGC	2 cut(s)	63, 192
NaeI	GCCGGC	1 cut(s)	193
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	4 cut(s)	200, 247, 464, 494
NlaIV	GGNNCC	2 cut(s)	9, 544
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	2 cut(s)	247, 464
PasI	CCCWGGG	1 cut(s)	367
PciI	ACATGT	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	3 cut(s)	358, 387, 505
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PscI	ACATGT	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	58, 366
PspEI	GGTNACC	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	58, 366
PspN4I	GGNNCC	2 cut(s)	9, 544
PspPI	GGNCC	3 cut(s)	189, 284, 329
PstNI	CAGNNNCTG	1 cut(s)	227
RigI	GGCCGGCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	3 cut(s)	201, 422, 465
SaqAI	TTAA	2 cut(s)	159, 486
SatI	GCNGC	1 cut(s)	522
Sau96I	GGNCC	3 cut(s)	189, 284, 329
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	60, 368
SfaNI	GCATC	2 cut(s)	394, 508
SinI	GGWCC	2 cut(s)	284, 329
SmiMI	CAYNNNNRTG	3 cut(s)	201, 422, 465
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	4 cut(s)	33, 216, 277, 290
SsiI	CCGC	2 cut(s)	299, 447
StyD4I	CCNGG	2 cut(s)	58, 366
TaaI	ACNGT	1 cut(s)	229
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	4 cut(s)	33, 216, 277, 290
TatI	WGTACW	1 cut(s)	457
TfiI	GAWTC	3 cut(s)	358, 387, 505
Tru1I	TTAA	2 cut(s)	159, 486
Tru9I	TTAA	2 cut(s)	159, 486
TscAI	CASTG	2 cut(s)	339, 348
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	17, 288, 443
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	339, 348
Van91I	CCANNNNNTGG	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	284, 329
XapI	RAATTY	2 cut(s)	33, 277
XceI	RCATGY	2 cut(s)	247, 464
XmiI	GTMKAC	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.