pycom05g05330

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0003852
Physical Location & Seq
Reverse (-)
6339901 .. 6341515
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGCTTTTTGGAAGCGAATTCTTTGAAGATTATGTAGGTCAACTTGCTTTGGCTTCTTTGTCATCTGTTGAAATTGAAGAAGAGACACAGGACCCTGAAGTCCGTAGGCAGAAAGTCACGGAGAAAATGAGGGCCTTGCAGAAGGAAAGGGAAGTAAAGCTCATAACTATTCTGAAAGATCGCCTTCAACCATTTGTTGATGGTTGTACAGATGATTTTGTAAAATGGGCAAATTCAGAAGCACGACGCCTCTCATCAGCTGCCTTCGGTGAGGCTATGCTGCATACGATTGGTTATATTTACACGAGGAAAGCTGCAAGAGAAATGGGAAAGGACAAACGATACATGAAGGTACCATTTTTAGCAGAATGGGTGCGAGATAAAGGACATCAGATAAAGTCACAGGTAGCAGCAGCTTCAGGTGCTGTAGCCTTAATTCAACTACAGGAAGATCTAAAGAAGTTGAACCAAGTTGAAAACAAGGAAGAGACCTTAATAAAAGCCATTGAAGATAAGAAGGATCTAGTGCTTAATTCCCTATGGCAGATTAACGTCGTTGATATTGAGTCAACCTTGTCACATGTCTGCCAAGCAGTACTTAAAGACCCCACTGTGTCCAGGGATGTTTTGAGGGTTCGGGCTCAAGCATTGAAAAAGTTAGGAACAATCTTCCAAGGTGCAAAAGCTGCTTACAGTAGAGAGAACAGTCTCCGCCATGAAAATGACACCAAAATAGATTCTGCTTCATCACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

252

Amino Acids

28.43

Weight (kDa)

7.72

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ-X PF14308 47 - 238 8.2e-57 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
Acc65I GGTACC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 352
AciI CCGC 1 cut(s) 712
AclWI GGATC 1 cut(s) 528
AcsI RAATTY 2 cut(s) 17, 232
AcuI CTGAAG 2 cut(s) 117, 402
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 3 cut(s) 208, 354, 597
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 9 cut(s) 26, 71, 77, 188, 440, 466, 476, 509, 652
AjnI CCWGG 1 cut(s) 617
AluBI AGCT 5 cut(s) 160, 260, 314, 416, 686
AluI AGCT 5 cut(s) 160, 260, 314, 416, 686
Alw26I GTCTC 3 cut(s) 77, 482, 713
AlwI GGATC 1 cut(s) 528
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 6 cut(s) 260, 280, 314, 410, 413, 686
ApoI RAATTY 2 cut(s) 17, 232
Asp718I GGTACC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 91, 132
AsuHPI GGTGA 2 cut(s) 281, 741
AvaII GGWCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 643
BauI CACGAG 1 cut(s) 304
BbvI GCAGC 6 cut(s) 247, 267, 301, 422, 425, 673
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 619
BcoDI GTCTC 3 cut(s) 77, 482, 713
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 2 cut(s) 426, 443
BglII AGATCT 1 cut(s) 451
BisI GCNGC 6 cut(s) 261, 281, 315, 411, 414, 687
BlsI GCNGC 6 cut(s) 262, 282, 316, 412, 415, 688
BmcAI AGTACT 1 cut(s) 597
Bme1390I CCNGG 1 cut(s) 619
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 91, 132
BmiI GGNNCC 2 cut(s) 93, 354
BmrFI CCNGG 1 cut(s) 619
BpuEI CTTGAG 1 cut(s) 627
BsaHI GRCGYC 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 618, 673
BseBI CCWGG 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 618, 673
BseGI GGATG 1 cut(s) 628
BseXI GCAGC 6 cut(s) 247, 267, 301, 422, 425, 673
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 352
BsmAI GTCTC 3 cut(s) 77, 482, 713
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 643
Bsp1407I TGTACA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 178, 451, 520
BspACI CCGC 1 cut(s) 712
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 93, 354
BspPI GGATC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 618, 673
BssMI GATC 3 cut(s) 178, 451, 520
BssNI GRCGYC 1 cut(s) 247
BssSI CACGAG 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 673
Bst2BI CACGAG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 4 cut(s) 613, 695, 707, 753
Bst6I CTCTTC 2 cut(s) 75, 480
BstACI GRCGYC 1 cut(s) 247
BstAPI GCANNNNNTGC 1 cut(s) 686
BstAUI TGTACA 1 cut(s) 206
BstF5I GGATG 1 cut(s) 628
BstKTI GATC 3 cut(s) 181, 454, 523
BstMAI GTCTC 3 cut(s) 77, 482, 713
BstMBI GATC 3 cut(s) 178, 451, 520
BstMWI GCNNNNNNNGC 2 cut(s) 422, 686
BstNI CCWGG 1 cut(s) 619
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 1 cut(s) 617
BstSFI CTRYAG 2 cut(s) 426, 443
BstV1I GCAGC 6 cut(s) 247, 267, 301, 422, 425, 673
BstX2I RGATCY 2 cut(s) 451, 520
BstYI RGATCY 2 cut(s) 451, 520
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 1 cut(s) 609
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 91, 132
CseI GACGC 1 cut(s) 255
Csp6I GTAC 3 cut(s) 207, 353, 596
CviAII CATG 3 cut(s) 346, 581, 716
CviQI GTAC 3 cut(s) 207, 353, 596
DpnI GATC 3 cut(s) 180, 453, 522
DpnII GATC 3 cut(s) 178, 451, 520
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 2 cut(s) 75, 480
EarI CTCTTC 2 cut(s) 75, 480
EciI GGCGGA 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 643
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 117, 402
EcoO109I RGGNCCY 2 cut(s) 91, 132
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 3 cut(s) 349, 584, 719
FaiI YATR 9 cut(s) 33, 164, 278, 285, 297, 347, 541, 582, 717
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 582, 614
FatI CATG 3 cut(s) 345, 580, 715
Fnu4HI GCNGC 6 cut(s) 261, 281, 315, 411, 414, 687
FokI GGATG 1 cut(s) 635
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 6 cut(s) 261, 281, 315, 411, 414, 687
FspBI CTAG 1 cut(s) 524
GluI GCNGC 6 cut(s) 261, 281, 315, 411, 414, 687
HaeIII GGCC 1 cut(s) 134
HgaI GACGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 3 cut(s) 349, 584, 719
HincII GTYRAC 2 cut(s) 41, 570
HindII GTYRAC 2 cut(s) 41, 570
HinfI GANTC 2 cut(s) 566, 737
HphI GGTGA 2 cut(s) 281, 741
Hpy166II GTNNAC 2 cut(s) 41, 570
Hpy188I TCNGA 3 cut(s) 174, 238, 393
Hpy8I GTNNAC 2 cut(s) 41, 570
Hpy99I CGWCG 2 cut(s) 249, 557
HpyAV CCTTC 5 cut(s) 136, 194, 274, 343, 511
HpyCH4III ACNGT 4 cut(s) 613, 695, 707, 753
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 4 cut(s) 139, 283, 317, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 686
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 3 cut(s) 349, 584, 719
KpnI GGTACC 1 cut(s) 356
Kzo9I GATC 3 cut(s) 178, 451, 520
LpnPI CCDG 7 cut(s) 74, 108, 389, 405, 431, 604, 631
Lsp1109I GCAGC 6 cut(s) 247, 267, 301, 422, 425, 673
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 3 cut(s) 115, 399, 576
MalI GATC 3 cut(s) 180, 453, 522
MboI GATC 3 cut(s) 178, 451, 520
MboII GAAGA 7 cut(s) 38, 89, 92, 461, 497, 521, 661
MflI RGATCY 2 cut(s) 451, 520
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 5 cut(s) 17, 72, 232, 435, 532
MlyI GAGTC 1 cut(s) 575
MnlI CCTC 5 cut(s) 123, 260, 265, 300, 624
MseI TTAA 5 cut(s) 434, 494, 531, 549, 600
MslI CAYNNNNRTG 1 cut(s) 720
MspA1I CMGCKG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 619
MvaI CCWGG 1 cut(s) 619
MwoI GCNNNNNNNGC 2 cut(s) 422, 686
NdeII GATC 3 cut(s) 178, 451, 520
NlaIII CATG 3 cut(s) 349, 584, 719
NlaIV GGNNCC 2 cut(s) 93, 354
NmuCI GTSAC 3 cut(s) 115, 399, 576
NspI RCATGY 1 cut(s) 584
PciI ACATGT 1 cut(s) 580
PfeI GAWTC 1 cut(s) 737
PkrI GCNGC 6 cut(s) 262, 282, 316, 412, 415, 688
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PpuMI RGGWCCY 1 cut(s) 91
PscI ACATGT 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 617
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 2 cut(s) 93, 354
PspPI GGNCC 2 cut(s) 91, 132
PspPPI RGGWCCY 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 2 cut(s) 451, 520
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 3 cut(s) 208, 354, 597
RsaNI GTAC 3 cut(s) 207, 353, 596
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 5 cut(s) 434, 494, 531, 549, 600
SatI GCNGC 6 cut(s) 261, 281, 315, 411, 414, 687
Sau3AI GATC 3 cut(s) 178, 451, 520
Sau96I GGNCC 2 cut(s) 91, 132
ScaI AGTACT 1 cut(s) 597
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 619
SduI GDGCHC 1 cut(s) 643
SfcI CTRYAG 2 cut(s) 426, 443
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 5 cut(s) 17, 72, 232, 435, 532
SsiI CCGC 1 cut(s) 712
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 1 cut(s) 617
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 4 cut(s) 613, 695, 707, 753
TaiI ACGT 1 cut(s) 555
TasI AATT 5 cut(s) 17, 72, 232, 435, 532
TatI WGTACW 2 cut(s) 206, 595
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 5 cut(s) 434, 494, 531, 549, 600
Tru9I TTAA 5 cut(s) 434, 494, 531, 549, 600
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 3 cut(s) 115, 399, 576
TseI GCWGC 6 cut(s) 260, 280, 314, 410, 413, 686
Tsp45I GTSAC 3 cut(s) 115, 399, 576
TspDTI ATGAA 3 cut(s) 362, 732, 735
TspGWI ACGGA 2 cut(s) 92, 134
TspRI CASTG 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 2 cut(s) 17, 232
XceI RCATGY 1 cut(s) 584
XspI CTAG 1 cut(s) 524
ZrmI AGTACT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.