Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004488

Physical Location & Seq

Genomic Coordinates Forward (+)

10133910 .. 10142357

Gene Structure 8448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07160.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3177 bp

ATGATTACTCGGCGGCTTGAGTTGGCTTGGTTCGTTTTGGTTCGGCTTCTTCCTACCAGGAGTTGTAATTATTTCCCTCCCAAAGTGCCACCCATTAGTACGCTAATTTTGTCCGTACGGTCAGCTCTGCAATCAAAGTACGGTCAGCCGGTCACCTTCTCCTCTGAGAAATTGAACCACCGTCGCCACCGCCACTGTCCCATTTCCCAGTCCCACCGCGCTTCCTCTCTCCGCCGTCTCTCTTCTCAAGTGCCGTCGGCATGTCCTCGACTCAGTTACATCTCCCAACCGACAGTTACATCTCCCTCTCAAAACCCCAATCCAAGCTCTACTCTTTTTATAATTTTTCCATTTATGAAGTATTTTTCTTCTTCATTATTTCCTTTGTTGGTGTGTGTCTGTGCAGAGCTTCCTGGTGTGCCAGACGACGTTGCGGAGAAGCTCGGTTTCGAGAAGATATCCGAAGAATTCATCGGAGACTGCGACTCCAACGCTGTGCTCTTCCGGCACAAAAAGACCGGCGCCCAAGTCATGTCTCTGTCCAATGGCGCCGGGCAAAAGGTCTTCGGCATTGCTTTTCAAACGATACCGACCGATTCGACCGGAGTCGCCAGCATACTGCATCACAGTGTGTTATGTGGGTCGAGAAAGTACCCGGTGAAAAAACCATTTGATGAGTTGGAAAATGGGAGCTTCAGTACTATTCTGGATTCACAAGCAATGGCTGATAAGACCTACTACTCTGGTGCTTGCACAACTACAAAGGAATTGTATAATCTCATTGATGTAATCCTGGATGCCGTCTTCTTTCCTAAATGTGTGGAGGACGTCCAGATTTTCCAGGAACAGGGTTGGCATTACGAGCTCAACGACCCTTCTGGAGATATATCTTATCAAGGCGTTGTCTTCAATAAGATGAAAGAGTTCTATTCTCGGCCTGGGCCTGATAATGTACTGAGGCAGACTGCTTGGCAGGCAAAGTACTTAGACATGAATGATGCAAGCTCAGCTCCAAATGTATCAATGGTCAAACCACAAAGGCTATTTTCAGAGTCAGTTAGGATTTTGAAGAACTATCCTTCTGATAAATCCGGTGATTTAGAGAAGGAAAATGTGGTATGCCTCAGTTGGATGCTCTGTGATAAGCCCTTAGACACAGAAACTGAGCAAACAATCGATGTTTTGGTTTATTTCATGATGGGAAACTTGACACGAATCTTGCGGGAATATGGTTATCATGTTTATATCGAGATTGTTCATCTCCTTCAACCTGTATTTCGCATTGCGGTGTTTAATGTTTCTCGCGATGACATTTTAAAGGTAGAACTATTTGTCACAAGTATACTTGTAGAATTTGTCGAGGAAGGCTTTGATACACATTGTGTAGAAGCATCCATAACTGCAATGGAGTTGTTCATTCTCAGAGGAGGCCTTAAAAAATCTCGAGGCTTGACCTTAATGCTGCTGTCCCTTGGTAAATGGATACATGAGATGAAACCCTTTGAGCCTTTGAAGTTTGGAAAATCTTTAATGGAGCTGAATGCCAGAATACAAAAGGAAGGATCTAAGGCTGTCCTCTCTCCTGTAATTGAGAAATTCATATTGAAGAATCCTCATAAAGTTGTGGTAGCAATGCGGCCTGATCCACAAAAGGTTTCTTCTGATGAAAAAGCTGAGAAAGAAATATTGAGGAAAGTTAAAGTCGGTATGAGTGAAGAAGATCTCGCTGAGCTGGCACGTGCTACGCAGGAGCTGCAACTGAAGCAGAAAACTCCTGACCCACCAGAAGCTTTGAGAAGTGTTCCAAGCCTATCTCTGCTAGACCTTCCAAAGGAACCTATTCATGTTCCCACAGAGGTTGCGTATGTCAATGGAGTTAAAGTATTGCAGCATGAGCTCTTCACGAATGATGTCCTTTACACTGAAATTGTGTTCAATATGGGTTCACTAAAGCAAGAGCTTCTTCCTTTGGTACCTATTTTCTGTTTCACGTTACTGAAGATGGATACAAAAGACATGAGTTCTGATGAACTTCGTCACTTGATTTCAAGAAAAACAGGAGGACTATCAATCGATCCAATGATTTTGTCTGTACGGTGCAAGAAAGATCCATGCGGCCATGTAGTTGTTGGAGGGAAAGTCATGGCAGGACGTGCTGAAGACCTATTTGAACTGATCAAGATTGTTCTTCAAGAAGTACAGTTTACAGACAAGAGGCGGTTTAAGAAGATAGTTTCCCAGTTTATAGTGAAGACTGCTAATTATCATGAAATTGCTGCTGCAAGGATGGAAGCAAAGCTAAACATTTCTGGGTGGATTCGTGAACAACTTTTTGGTATCAGTCAATTGGAGTTTCTGCAAGTGCTTGGAGAGAAAGTTGATCAAGATTGGGATGGCATTTCTTCATCCCTAGAGGAGATTCGGAAGTCCATAATTTGTAAAAAAGGTTGCCTCATAAATATGATTTCTGAAAGGAAGAATCTTACCAAATCTGAGAAGTTTATTAGGAAATTTCTGGATTTGCTGCCTCATAAGTCTCCATTTGCAAGAAGAACTACATGGAAAGGTAGACTACCTTCCGAAAATGAGGCCATCATAATGCCTATTAAGGTTAATTATGTTGGAAAGTCTGTTAACATTCATGATACTGGTTATCAGCTTAATGGAAGTACACATGTTATCTCCAAATTTATTGATGATGCATGGTTGTGTGATCGCGTAGGAATTAGCGATGGTGCATCTGCTTCTTGTTACTTTGATATTTACACAGGAGTATTCTCTTTCTTGTCTGATCGGGACCCCAAGTTGTTAAAGACGCTTGACGTATATGATGGAACTGGAGATTTTCTACGACAACTAGAAATAGATGATAATACTCTTAGAAGGGCCATCATTCAGGCACTCAGAGATGATTCGTGCCCGCTTCCTGATGGCAAAAGTTGTAGTAGTTTCCTGGAGGACTATTTAATGGGAGTCACAGAAGAAGAAAGGCAAAAGAGACATAAAGAGATATTGTCAACCAGCTTGAAGGACTTCAAGAAATTTGCAGATGCACTCGACGCAGTTAAATATAAAGGAGTTGTGGTTGCAGTGGGATCGCTATTGGATATCAAAGCAGCACTAAAGAAGCGACCTAAACTCTTCAAACAATTGATAGCACCTCTCTTCACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

1059

Amino Acids

119.49

Weight (kDa)

8.41

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49630 AT1G49630 AT1G49630 AT1G49630 AT1G49630 AT3G19170 AT3G19170
fragaria_vesca	FvH4_2g06380 FvH4_2g06380 FvH4_2g06380 FvH4_2g06380 FvH4_2g06380
malus_domestica	MD05G1078000.v1.1 MD10G1092200.v1.1 MD11G1150900.v1.1
prunus_persica	Prupe.8G122100_v2.0.a1 Prupe.8G122200_v2.0.a1
pyrus_communis	pycom05g07050 pycom05g07160 pycom10g07580
rosa_chinensis	RchiOBHm_Chr6g0258261
rosa_laevigata	RLG00000014634
rosa_multiflora	Rmu_sc0004230.1_g000015
rosa_roxburghii	Rroxscaffold_178G00437220 Rroxscaffold_7G00205380
rosa_rugosa	Rorug05G0579700
rosa_samantha	Rh6AG097600 Rh6BG088700 Rh6CG084700 Rh6DG080800
rosa_wichuraiana	Rw6G008290 Rw6G008350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AatII	GACGTC	1 cut(s)	831
Acc65I	GGTACC	1 cut(s)	1972
AccB1I	GGYRCC	3 cut(s)	521, 548, 1972
AccI	GTMKAC	2 cut(s)	1342, 2569
AccII	CGCG	3 cut(s)	219, 1305, 2718
AclWI	GGATC	5 cut(s)	1570, 1637, 2069, 2102, 3103
AcoI	YGGCCR	1 cut(s)	2116
AcsI	RAATTY	6 cut(s)	467, 1352, 1595, 2510, 2687, 3041
AcuI	CTGAAG	4 cut(s)	679, 1781, 2018, 2178
AcvI	CACGTG	1 cut(s)	1739
AcyI	GRCGYC	3 cut(s)	522, 549, 828
AdeI	CACNNNGTG	2 cut(s)	631, 1382
AfiI	CCNNNNNNNGG	2 cut(s)	847, 1831
AflIII	ACRYGT	1 cut(s)	2674
AjiI	CACGTC	1 cut(s)	2153
AjnI	CCWGG	6 cut(s)	56, 412, 792, 840, 937, 2952
AjuI	GAANNNNNNNTTGG	2 cut(s)	2316, 2348
Alw21I	GWGCWC	3 cut(s)	501, 867, 1899
Alw26I	GTCTC	5 cut(s)	242, 471, 540, 2541, 2992
AlwI	GGATC	5 cut(s)	1570, 1637, 2069, 2102, 3103
AlwNI	CAGNNNCTG	2 cut(s)	1163, 1753
Ama87I	CYCGRG	1 cut(s)	1443
AoxI	GGCC	7 cut(s)	935, 941, 1429, 1637, 2116, 2589, 2886
ApeKI	GCWGC	7 cut(s)	1462, 1753, 1888, 2276, 2279, 2524, 3116
ApoI	RAATTY	6 cut(s)	467, 1352, 1595, 2510, 2687, 3041
Asp700I	GAANNNNTTC	3 cut(s)	923, 1839, 3032
Asp718I	GGTACC	1 cut(s)	1972
AspLEI	GCGC	3 cut(s)	221, 524, 551
AspS9I	GGNCC	3 cut(s)	941, 2797, 2886
AsuC2I	CCSGG	2 cut(s)	553, 656
AsuHPI	GGTGA	3 cut(s)	145, 670, 1106
AvaI	CYCGRG	1 cut(s)	1443
AvaII	GGWCC	1 cut(s)	2797
BaeGI	GKGCMC	1 cut(s)	2921
BanI	GGYRCC	3 cut(s)	521, 548, 1972
BanII	GRGCYC	2 cut(s)	867, 1899
BarI	GAAGNNNNNNTAC	2 cut(s)	2560, 2592
BbrPI	CACGTG	1 cut(s)	1739
BbsI	GAAGAC	5 cut(s)	556, 796, 898, 2166, 2258
Bbv12I	GWGCWC	3 cut(s)	501, 867, 1899
BbvI	GCAGC	7 cut(s)	1449, 1740, 1900, 2263, 2266, 2511, 3128
BccI	CCATC	9 cut(s)	1192, 1996, 2281, 2387, 2600, 2726, 2825, 2897, 2924
BceAI	ACGGC	3 cut(s)	219, 238, 785
BcgI	CGANNNNNNTGC	2 cut(s)	3078, 3112
BciT130I	CCWGG	6 cut(s)	58, 414, 794, 842, 939, 2954
BciVI	GTATCC	2 cut(s)	1476, 1999
BclI	TGATCA	2 cut(s)	2175, 2380
BcnI	CCSGG	2 cut(s)	553, 656
BcoDI	GTCTC	5 cut(s)	242, 471, 540, 2541, 2992
BfaI	CTAG	3 cut(s)	1820, 2411, 2858
BfoI	RGCGCY	2 cut(s)	525, 552
BfuI	GTATCC	2 cut(s)	1476, 1999
BglII	AGATCT	1 cut(s)	1720
BlpI	GCTNAGC	2 cut(s)	1006, 1728
BmcAI	AGTACT	2 cut(s)	700, 983
Bme1390I	CCNGG	8 cut(s)	58, 414, 553, 656, 794, 842, 939, 2954
Bme18I	GGWCC	1 cut(s)	2797
BmeT110I	CYCGRG	1 cut(s)	1443
BmgBI	CACGTC	1 cut(s)	2153
BmgT120I	GGNCC	3 cut(s)	941, 2797, 2886
BmiI	GGNNCC	6 cut(s)	523, 550, 1836, 1974, 2798, 2799
BmrFI	CCNGG	8 cut(s)	58, 414, 553, 656, 794, 842, 939, 2954
BmrI	ACTGGG	2 cut(s)	202, 2233
BmsI	GCATC	8 cut(s)	631, 787, 988, 1122, 1400, 2689, 2747, 3040
BmuI	ACTGGG	2 cut(s)	202, 2233
BoxI	GACNNNNGTC	1 cut(s)	605
BpiI	GAAGAC	5 cut(s)	556, 796, 898, 2166, 2258
BpmI	CTGGAG	3 cut(s)	900, 2859, 2975
Bpu1102I	GCTNAGC	2 cut(s)	1006, 1728
BpuEI	CTTGAG	2 cut(s)	38, 231
BpuMI	CCSGG	2 cut(s)	553, 656
Bsa29I	ATCGAT	2 cut(s)	1176, 2073
BsaAI	YACGTR	1 cut(s)	1739
BsaHI	GRCGYC	3 cut(s)	522, 549, 828
BsaJI	CCNNGG	2 cut(s)	938, 1471
BsaWI	WCCGGW	2 cut(s)	602, 1091
Bsc4I	CCNNNNNNNGG	2 cut(s)	847, 1831
Bse118I	RCCGGY	2 cut(s)	148, 518
Bse1I	ACTGG	4 cut(s)	208, 2239, 2653, 2842
Bse3DI	GCAATG	5 cut(s)	570, 726, 1281, 1410, 1638
BseBI	CCWGG	6 cut(s)	58, 414, 794, 842, 939, 2954
BseCI	ATCGAT	2 cut(s)	1176, 2073
BseDI	CCNNGG	2 cut(s)	938, 1471
BseGI	GGATG	6 cut(s)	802, 1137, 1391, 2292, 2398, 2405
BseLI	CCNNNNNNNGG	2 cut(s)	847, 1831
BseMI	GCAATG	5 cut(s)	570, 726, 1281, 1410, 1638
BseNI	ACTGG	4 cut(s)	208, 2239, 2653, 2842
BseRI	GAGGAG	3 cut(s)	151, 1440, 2429
BseSI	GKGCMC	1 cut(s)	2921
BseXI	GCAGC	7 cut(s)	1449, 1740, 1900, 2263, 2266, 2511, 3128
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	3 cut(s)	219, 1305, 2718
Bsh1285I	CGRYCG	2 cut(s)	594, 603
BshFI	GGCC	7 cut(s)	937, 943, 1431, 1639, 2118, 2591, 2888
BshNI	GGYRCC	3 cut(s)	521, 548, 1972
BshVI	ATCGAT	2 cut(s)	1176, 2073
BsiEI	CGRYCG	2 cut(s)	594, 603
BsiHKAI	GWGCWC	3 cut(s)	501, 867, 1899
BsiHKCI	CYCGRG	1 cut(s)	1443
BsiSI	CCGG	7 cut(s)	149, 505, 519, 552, 603, 656, 1092
BsiWI	CGTACG	1 cut(s)	115
BslFI	GGGAC	4 cut(s)	183, 196, 1453, 2810
BslI	CCNNNNNNNGG	2 cut(s)	847, 1831
BsmAI	GTCTC	5 cut(s)	242, 471, 540, 2541, 2992
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	4 cut(s)	183, 196, 1453, 2810
BsmI	GAATGC	1 cut(s)	1546
BsnI	GGCC	7 cut(s)	937, 943, 1431, 1639, 2118, 2591, 2888
BsoBI	CYCGRG	1 cut(s)	1443
Bsp1286I	GDGCHC	4 cut(s)	501, 867, 1899, 2921
Bsp1720I	GCTNAGC	2 cut(s)	1006, 1728
Bsp68I	TCGCGA	1 cut(s)	1305
BspANI	GGCC	7 cut(s)	937, 943, 1431, 1639, 2118, 2591, 2888
BspDI	ATCGAT	2 cut(s)	1176, 2073
BspFNI	CGCG	3 cut(s)	219, 1305, 2718
BspHI	TCATGA	3 cut(s)	1194, 2266, 2641
BspLI	GGNNCC	6 cut(s)	523, 550, 1836, 1974, 2798, 2799
BspPI	GGATC	5 cut(s)	1570, 1637, 2069, 2102, 3103
BspQI	GCTCTTC	2 cut(s)	506, 1904
BspT107I	GGYRCC	3 cut(s)	521, 548, 1972
BsrDI	GCAATG	5 cut(s)	570, 726, 1281, 1410, 1638
BsrFI	RCCGGY	2 cut(s)	148, 518
BsrI	ACTGG	4 cut(s)	208, 2239, 2653, 2842
BssAI	RCCGGY	2 cut(s)	148, 518
BssECI	CCNNGG	2 cut(s)	938, 1471
BssNAI	GTATAC	1 cut(s)	1343
BssNI	GRCGYC	3 cut(s)	522, 549, 828
BssT1I	CCWWGG	1 cut(s)	1471
Bst1107I	GTATAC	1 cut(s)	1343
Bst2UI	CCWGG	6 cut(s)	58, 414, 794, 842, 939, 2954
Bst4CI	ACNGT	8 cut(s)	120, 143, 182, 197, 295, 629, 2097, 2202
Bst6I	CTCTTC	5 cut(s)	247, 506, 1904, 3146, 3170
BstACI	GRCGYC	3 cut(s)	522, 549, 828
BstAPI	GCANNNNNTGC	2 cut(s)	1753, 2153
BstBAI	YACGTR	1 cut(s)	1739
BstC8I	GCNNGC	6 cut(s)	613, 751, 975, 1003, 1734, 2921
BstEII	GGTNACC	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	1829
BstF5I	GGATG	6 cut(s)	802, 1137, 1391, 2292, 2398, 2405
BstFNI	CGCG	3 cut(s)	219, 1305, 2718
BstH2I	RGCGCY	2 cut(s)	525, 552
BstHHI	GCGC	3 cut(s)	221, 524, 551
BstMAI	GTCTC	5 cut(s)	242, 471, 540, 2541, 2992
BstMCI	CGRYCG	2 cut(s)	594, 603
BstNI	CCWGG	6 cut(s)	58, 414, 794, 842, 939, 2954
BstNSI	RCATGY	2 cut(s)	264, 2678
BstPAI	GACNNNNGTC	1 cut(s)	605
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	8 cut(s)	56, 412, 551, 654, 792, 840, 937, 2952
BstSLI	GKGCMC	1 cut(s)	2921
BstUI	CGCG	3 cut(s)	219, 1305, 2718
BstV1I	GCAGC	7 cut(s)	1449, 1740, 1900, 2263, 2266, 2511, 3128
BstV2I	GAAGAC	5 cut(s)	556, 796, 898, 2166, 2258
BstX2I	RGATCY	3 cut(s)	1562, 1720, 2107
BstYI	RGATCY	3 cut(s)	1562, 1720, 2107
BstZ17I	GTATAC	1 cut(s)	1343
Bsu15I	ATCGAT	2 cut(s)	1176, 2073
BsuI	GTATCC	2 cut(s)	1476, 1999
BsuRI	GGCC	7 cut(s)	937, 943, 1431, 1639, 2118, 2591, 2888
BsuTUI	ATCGAT	2 cut(s)	1176, 2073
BtgZI	GCGATG	2 cut(s)	1320, 2745
BtrI	CACGTC	1 cut(s)	2153
BtsCI	GGATG	6 cut(s)	802, 1137, 1391, 2292, 2398, 2405
BtsI	GCAGTG	1 cut(s)	3096
BtsIMutI	CAGTG	5 cut(s)	193, 634, 1920, 3096, 3168
BtuMI	TCGCGA	1 cut(s)	1305
Cac8I	GCNNGC	6 cut(s)	613, 751, 975, 1003, 1734, 2921
CaiI	CAGNNNCTG	2 cut(s)	1163, 1753
CciI	TCATGA	3 cut(s)	1194, 2266, 2641
CfoI	GCGC	3 cut(s)	221, 524, 551
Cfr10I	RCCGGY	2 cut(s)	148, 518
Cfr13I	GGNCC	3 cut(s)	941, 2797, 2886
ClaI	ATCGAT	2 cut(s)	1176, 2073
CseI	GACGC	2 cut(s)	2824, 3068
CspCI	CAANNNNNGTGG	2 cut(s)	1840, 1875
DinI	GGCGCC	2 cut(s)	523, 550
DraI	TTTAAA	1 cut(s)	1317
DraIII	CACNNNGTG	2 cut(s)	631, 1382
EaeI	YGGCCR	1 cut(s)	2116
Eam1104I	CTCTTC	5 cut(s)	247, 506, 1904, 3146, 3170
EarI	CTCTTC	5 cut(s)	247, 506, 1904, 3146, 3170
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	2 cut(s)	865, 1897
Eco130I	CCWWGG	1 cut(s)	1471
Eco147I	AGGCCT	1 cut(s)	1431
Eco24I	GRGCYC	2 cut(s)	867, 1899
Eco32I	GATATC	2 cut(s)	459, 3109
Eco47I	GGWCC	1 cut(s)	2797
Eco53kI	GAGCTC	2 cut(s)	865, 1897
Eco57I	CTGAAG	4 cut(s)	679, 1781, 2018, 2178
Eco72I	CACGTG	1 cut(s)	1739
Eco88I	CYCGRG	1 cut(s)	1443
Eco91I	GGTNACC	1 cut(s)	151
EcoICRI	GAGCTC	2 cut(s)	865, 1897
EcoNI	CCTNNNNNAGG	1 cut(s)	1829
EcoO109I	RGGNCCY	1 cut(s)	2797
EcoO65I	GGTNACC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	6 cut(s)	56, 412, 792, 840, 937, 2952
EcoRV	GATATC	2 cut(s)	459, 3109
EcoT14I	CCWWGG	1 cut(s)	1471
EcoT22I	ATGCAT	1 cut(s)	2704
EcoT38I	GRGCYC	2 cut(s)	867, 1899
EgeI	GGCGCC	2 cut(s)	523, 550
EheI	GGCGCC	2 cut(s)	523, 550
ErhI	CCWWGG	1 cut(s)	1471
Esp3I	CGTCTC	1 cut(s)	242
FalI	AAGNNNNNCTT	2 cut(s)	1947, 1979
FaqI	GGGAC	4 cut(s)	183, 196, 1453, 2810
FauI	CCCGC	2 cut(s)	1215, 2928
FbaI	TGATCA	2 cut(s)	2175, 2380
FblI	GTMKAC	2 cut(s)	1342, 2569
FokI	GGATG	6 cut(s)	809, 1144, 1378, 2299, 2392, 2405
FriOI	GRGCYC	2 cut(s)	867, 1899
FspBI	CTAG	3 cut(s)	1820, 2411, 2858
GlaI	GCGC	3 cut(s)	220, 523, 550
GsuI	CTGGAG	3 cut(s)	900, 2859, 2975
HaeII	RGCGCY	2 cut(s)	525, 552
HaeIII	GGCC	7 cut(s)	937, 943, 1431, 1639, 2118, 2591, 2888
HapII	CCGG	7 cut(s)	149, 505, 519, 552, 603, 656, 1092
HgaI	GACGC	2 cut(s)	2824, 3068
HhaI	GCGC	3 cut(s)	221, 524, 551
Hin1I	GRCGYC	3 cut(s)	522, 549, 828
Hin6I	GCGC	3 cut(s)	219, 522, 549
HinP1I	GCGC	3 cut(s)	219, 522, 549
HincII	GTYRAC	2 cut(s)	2635, 3018
HindII	GTYRAC	2 cut(s)	2635, 3018
HindIII	AAGCTT	1 cut(s)	1788
HpaI	GTTAAC	1 cut(s)	2635
HpaII	CCGG	7 cut(s)	149, 505, 519, 552, 603, 656, 1092
HphI	GGTGA	3 cut(s)	145, 670, 1106
Hpy166II	GTNNAC	8 cut(s)	1343, 1946, 2205, 2324, 2570, 2635, 2672, 3018
Hpy8I	GTNNAC	8 cut(s)	1343, 1946, 2205, 2324, 2570, 2635, 2672, 3018
Hpy99I	CGWCG	4 cut(s)	186, 259, 431, 3062
HpyCH4III	ACNGT	8 cut(s)	120, 143, 182, 197, 295, 629, 2097, 2202
HpyCH4IV	ACGT	6 cut(s)	429, 828, 1738, 1991, 2152, 2823
HpySE526I	ACGT	6 cut(s)	429, 828, 1738, 1991, 2152, 2823
Hsp92I	GRCGYC	3 cut(s)	522, 549, 828
HspAI	GCGC	3 cut(s)	219, 522, 549
KasI	GGCGCC	2 cut(s)	521, 548
KflI	GGGWCCC	1 cut(s)	2797
KpnI	GGTACC	1 cut(s)	1976
Ksp22I	TGATCA	2 cut(s)	2175, 2380
KspAI	GTTAAC	1 cut(s)	2635
LguI	GCTCTTC	2 cut(s)	506, 1904
LmnI	GCTCC	4 cut(s)	690, 1015, 1534, 1750
Lsp1109I	GCAGC	7 cut(s)	1449, 1740, 1900, 2263, 2266, 2511, 3128
LweI	GCATC	8 cut(s)	631, 787, 988, 1122, 1400, 2689, 2747, 3040
MaeI	CTAG	3 cut(s)	1820, 2411, 2858
MaeII	ACGT	6 cut(s)	429, 828, 1738, 1991, 2152, 2823
MaeIII	GTNAC	8 cut(s)	151, 275, 295, 1333, 1992, 2036, 2750, 2974
MfeI	CAATTG	2 cut(s)	2345, 3149
MflI	RGATCY	3 cut(s)	1562, 1720, 2107
MhlI	GDGCHC	4 cut(s)	501, 867, 1899, 2921
Mly113I	GGCGCC	2 cut(s)	522, 549
MlyI	GAGTC	5 cut(s)	264, 479, 615, 1061, 2982
MmeI	TCCRAC	5 cut(s)	513, 660, 1109, 2110, 2602
Mph1103I	ATGCAT	1 cut(s)	2704
MroXI	GAANNNNTTC	3 cut(s)	923, 1839, 3032
MslI	CAYNNNNRTG	5 cut(s)	627, 1286, 2459, 2597, 2707
MspI	CCGG	7 cut(s)	149, 505, 519, 552, 603, 656, 1092
MspR9I	CCNGG	8 cut(s)	58, 414, 553, 656, 794, 842, 939, 2954
MunI	CAATTG	2 cut(s)	2345, 3149
Mva1269I	GAATGC	1 cut(s)	1546
MvaI	CCWGG	6 cut(s)	58, 414, 794, 842, 939, 2954
MvnI	CGCG	3 cut(s)	219, 1305, 2718
NarI	GGCGCC	2 cut(s)	522, 549
NciI	CCSGG	2 cut(s)	553, 656
NlaIV	GGNNCC	6 cut(s)	523, 550, 1836, 1974, 2798, 2799
NmeAIII	GCCGAG	1 cut(s)	913
NmuCI	GTSAC	4 cut(s)	151, 1333, 2036, 2974
NruI	TCGCGA	1 cut(s)	1305
NsiI	ATGCAT	1 cut(s)	2704
NspI	RCATGY	2 cut(s)	264, 2678
PaeR7I	CTCGAG	1 cut(s)	1443
PagI	TCATGA	3 cut(s)	1194, 2266, 2641
PceI	AGGCCT	1 cut(s)	1431
PciI	ACATGT	1 cut(s)	2674
PciSI	GCTCTTC	2 cut(s)	506, 1904
PcsI	WCGNNNNNNNCGW	2 cut(s)	480, 867
PctI	GAATGC	1 cut(s)	1546
PdmI	GAANNNNTTC	3 cut(s)	923, 1839, 3032
PfeI	GAWTC	8 cut(s)	596, 710, 1215, 1609, 2317, 2419, 2479, 2912
Pfl23II	CGTACG	1 cut(s)	115
PfoI	TCCNGGA	3 cut(s)	792, 840, 2952
PleI	GAGTC	5 cut(s)	264, 479, 614, 1060, 2981
PluTI	GGCGCC	2 cut(s)	525, 552
PmaCI	CACGTG	1 cut(s)	1739
PmlI	CACGTG	1 cut(s)	1739
PpsI	GAGTC	5 cut(s)	264, 479, 614, 1060, 2981
Ppu21I	YACGTR	1 cut(s)	1739
PpuMI	RGGWCCY	1 cut(s)	2797
PscI	ACATGT	1 cut(s)	2674
PshAI	GACNNNNGTC	1 cut(s)	605
PsiI	TTATAA	1 cut(s)	341
Psp124BI	GAGCTC	2 cut(s)	867, 1899
Psp5II	RGGWCCY	1 cut(s)	2797
Psp6I	CCWGG	6 cut(s)	56, 412, 792, 840, 937, 2952
PspCI	CACGTG	1 cut(s)	1739
PspEI	GGTNACC	1 cut(s)	151
PspGI	CCWGG	6 cut(s)	56, 412, 792, 840, 937, 2952
PspLI	CGTACG	1 cut(s)	115
PspN4I	GGNNCC	6 cut(s)	523, 550, 1836, 1974, 2798, 2799
PspPI	GGNCC	3 cut(s)	941, 2797, 2886
PspPPI	RGGWCCY	1 cut(s)	2797
PstNI	CAGNNNCTG	2 cut(s)	1163, 1753
PsuI	RGATCY	3 cut(s)	1562, 1720, 2107
RruI	TCGCGA	1 cut(s)	1305
RseI	CAYNNNNRTG	5 cut(s)	627, 1286, 2459, 2597, 2707
SacI	GAGCTC	2 cut(s)	867, 1899
SapI	GCTCTTC	2 cut(s)	506, 1904
Sau96I	GGNCC	3 cut(s)	941, 2797, 2886
ScaI	AGTACT	2 cut(s)	700, 983
SchI	GAGTC	5 cut(s)	264, 479, 615, 1061, 2982
ScrFI	CCNGG	8 cut(s)	58, 414, 553, 656, 794, 842, 939, 2954
SduI	GDGCHC	4 cut(s)	501, 867, 1899, 2921
SfaNI	GCATC	8 cut(s)	631, 787, 988, 1122, 1400, 2689, 2747, 3040
SfoI	GGCGCC	2 cut(s)	523, 550
Sfr274I	CTCGAG	1 cut(s)	1443
SinI	GGWCC	1 cut(s)	2797
SlaI	CTCGAG	1 cut(s)	1443
SmiMI	CAYNNNNRTG	5 cut(s)	627, 1286, 2459, 2597, 2707
SmlI	CTYRAG	3 cut(s)	17, 246, 1443
SmoI	CTYRAG	3 cut(s)	17, 246, 1443
SseBI	AGGCCT	1 cut(s)	1431
SspDI	GGCGCC	2 cut(s)	521, 548
SspI	AATATT	1 cut(s)	1686
SspMI	CTAG	3 cut(s)	1820, 2411, 2858
SstI	GAGCTC	2 cut(s)	867, 1899
StuI	AGGCCT	1 cut(s)	1431
StyD4I	CCNGG	8 cut(s)	56, 412, 551, 654, 792, 840, 937, 2952
StyI	CCWWGG	1 cut(s)	1471
TaaI	ACNGT	8 cut(s)	120, 143, 182, 197, 295, 629, 2097, 2202
TaiI	ACGT	6 cut(s)	432, 831, 1741, 1994, 2155, 2826
TaqII	GACCGA	1 cut(s)	608
TatI	WGTACW	5 cut(s)	698, 952, 981, 2197, 2669
TauI	GCSGC	3 cut(s)	16, 1639, 2118
TfiI	GAWTC	8 cut(s)	596, 710, 1215, 1609, 2317, 2419, 2479, 2912
TscAI	CASTG	5 cut(s)	200, 634, 1927, 3096, 3175
TseFI	GTSAC	4 cut(s)	151, 1333, 2036, 2974
TseI	GCWGC	7 cut(s)	1462, 1753, 1888, 2276, 2279, 2524, 3116
Tsp45I	GTSAC	4 cut(s)	151, 1333, 2036, 2974
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	5 cut(s)	200, 634, 1927, 3096, 3175
VpaK11BI	GGWCC	1 cut(s)	2797
XagI	CCTNNNNNAGG	1 cut(s)	1829
XapI	RAATTY	6 cut(s)	467, 1352, 1595, 2510, 2687, 3041
XceI	RCATGY	2 cut(s)	264, 2678
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1402, 2126
XhoI	CTCGAG	1 cut(s)	1443
XmiI	GTMKAC	2 cut(s)	1342, 2569
XmnI	GAANNNNTTC	3 cut(s)	923, 1839, 3032
XspI	CTAG	3 cut(s)	1820, 2411, 2858
ZraI	GACGTC	1 cut(s)	829
ZrmI	AGTACT	2 cut(s)	700, 983
Zsp2I	ATGCAT	1 cut(s)	2704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.