Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000178

Orthogroup ID

OG0004488

Physical Location & Seq

Genomic Coordinates Reverse (-)

32158 .. 42493

Gene Structure 10336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_178G00437220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3171 bp

ATGAACGTGTTCTTTCTTGAGAGAGTATCAAAGACGGTGTGTATGTTGGTGTGGCTGCGGGTACTTACTGTGCTTACTTTTTATAGCCTTGCAGGTGCCGAAGTGTTATTGGACATCATACGTGTTGCAGCTGATTGTGCTTCTGGTCCATTTACTTCACTTGTGGTGGATTACTCGCTTATTGCAAAAGGTATGGAAGCAGTTGCTAATAATTCTAATGCTAGGGGATCTGCTTTTAAGGGCGGGATTACAGTAATTGCTGGATCTGCTAGCCTTCTTCTCCTTCCGCCCCCCTCTATCCCATTCTTTCGATTCTCTCGCTCCTCCTCTTCTTCTTCTTCTGCTCTCAGAACCCATCGCCACCGTCCGATTCTCCGACCCTCCTCCGGCCGCCCCCTCCGCCGCACCAGCCTCTTACCACTCCCCGCCGCTTCCACCCACTTCCCCACGCGCTTCTCCTCCCTCTCCCTACGCGCTGTCGCCACGCCCTTAACCCCCTCGCCGTCAGAGTTCTCTGGGGTTTCCGATGAGGTTGCGGAACAGCTGGGATTCGAGAAGGTCGCTGAAGAGTTTATAGGAGAGTGTAAATCCAAAGCTCTGCTCTTTAAGCACAAAAAGACCGGTGCACAGGTGATCTCTGTTTCCAACGACGATGAGAACAAGGTTTTCGGCATTGTTTTCCGAACACCACCAAATGATTCGACTGGAATCCCACACATTTTGGAACACAGTGTGCTGTGTGGTTCTAGGAAATACCCTTTGAAAGAGCCGTTTGTGGAACTGTTGAAAGGGAGCTTGAATACTTTTCTCAATGCATTCACCTATCCTGATAGGACTTGCTACCCTGTTGCCTCCACAAATTCAAAGGATTTCTATAATCTGGTCGATGTGTACCTGGATGCTGTGTTCTTTCCAAAATGCGTGGAGGATTTCCAGACTTTCCAGCAGGAGGGCTGGCACTATGAGCTCAACGATCCTTCTGAAGACATATCGTATAAAGGAGTTGTTTTCAATGAGATGAAAGGGGTGTACTCCCAGCCTGATAATATATTAGGCCGGATTGCTCAACAGGCAACAAGGTCTTCTAGGAAACTTTATAACCAGTTGGGAGCAAAGTTATCTTGGGCTTTCATTTTAACAGATAGGTCTGAGCTGAATGCTCTTTTTCCAGACAATACCTATGGTGTGGACAGTGGAGGTGATCCAAAAGTTATTCCCAAACTGACATATGAGGAATTTAAGGAATTTCACCGTAAATATTACCATCCGAGCAATGCCAGGATTTGGTTTTATGGAGATGATGATCCAACTGAGCGCCTACGCATTTTAAGTGAGTACCTAGATATGTTTGATGCAAGTTCAGCTCCAAATGAATCGAGGGTTCAAACACAAAAACTATTTTCGGAACCAGTTAGGATTTCTGAGACATATCCTGCTGGTGAAGGCGGTGACTTAAAGAAAAAAGACATGGTATGCATCAATTGGCTGCTCTCTGAGAAACCCTTAGACTTGGAAACTGAGCTTGCCCTTGGGTTTTTGGATCATCTTATGTTGGGAACTCCTGCCTCTCCATTGAGGAAAATATTACTGGAAAGTGGCTTGGGAGAAGCTATCATTGGAGGTGGGGTTGAAGATGAGCTACTTCAACCTCAATTTAGTATTGGGTTGAAGGGTGTTTCTCAAGATGATATTCAAAAGGTAGAAGAATTAGTCATGAGTACACTTAAAAAATTGGCGGACGAAGGGTTCGATACAGCTGCTGTAGAAGCATCCATGAATACCATTGAGTTTTCTCTCAGGGAAAACAACACCGGATCATTTCCTCGTGGGTTGTCCTTAATGCTTCGATCCATGCCTGACCCAGAAAAAGCTTCTCGTGATGAAGCAGCTGAGAAAGAAATTTTGGAGAAAGTAAAAGCAGGTATGACAGAAGAAGATCTTGCTGAGCTAGCACGCGCTACACAAGAACTGAAACTGAAGCAGGAAACTCCTGATCCACCAGAAGCTCTGAGAAGTGTTCCAAGCCTCTCTCTACGTGACATTCCAAAAGAACCTATTCTTGTTCCCACAGAGGTTGGGGAGATCAGTGGAGTTAAAGTTTTGCAGCATGACCTTTTCACAAATGATGTTCTCTACACTGAAGTTGTGTTCAATATGAGTTCACTAAAGCAAGAGCTCCTTCCTTTGTTGATTGGAAGAAAAACTGGAGGGATATCAGTTTATCCACTGACATCATCTGTCCGGGGCAAGGAAGATGCCTGTAGCCATATAATTGTTCGAGGCAAAGCCATGGCAGGACGTGCTGATGATCTATTTCATCTGAACCGATTGAGAGGTAGCGGTCATGGAATTGCTGCTGCAAGGATGGATGCAAAGCTAAATGTCGCGGGTTGGATTTCTGAACAAATGGGTGGTTTCAGTTACTTGGAGTTTCTACAAGCTCTTGAAGAGAAAGTTGATGATGATTGGGAGAGAATATCTTCATCTCTTGAGGAGATTCGCAAGTCCTTACTTTCACGGGAAGGTTGCTTGATTAATATGACTGCTGAAGGAAAGAATCTTACCAACTCTCAGAAGTTCGTTGGCAAATTTCTGGATTTGCTGCCTCGCAGTTCTCCCATTGCAACAACTACTTGGAATGCTCAATTACCTTCTACAAATGAAGCCATTGTTATACCTACTCAGGTTAATTATGTTGGAAAAGCAGCCAACATTTATGAGACTGGGTATCAACTTAATGGAACTGCATATGTTATCTCCAAATACATAAGTAATACATGGTTGTGGGATCGTGTACGAGTTAGTGGTGGAGCATATGGAGGCTTTTGCGACTTTGATAGTCACTCCGGTGTGTTCTCCTTCTTATCTTATCGCGACCCCAACTTGTTAAAGACACTTGATATATATGATGGAACTGGGGAATTTCTTAGACAACTAGATATGGATGAAGAAACTCTCACAAAGTCCATTATTGGAACAATTGGAGACGTTGATTCATACCAGCTTCCTGATGCCAAAGGTTATAGTAGCTTGAAGGACTTCAAGGAGTTTGCAAATGCAATTGATGCAGTTAAAGACAAAGGGGTTGCTGTTGCAGTGGCATCTCCAGATGATGTGGATGCAGCACAGAAGGAAAGATCAAACTTATTTGAAGTCAAGAAAGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031967 GO:0031974 GO:0031975 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

1056

Amino Acids

116.77

Weight (kDa)

5.28

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	231 - 307	3.4e-06	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	407 - 593	2.7e-26	Peptidase M16 inactive domain
M16C_assoc	PF08367	619 - 730	2.3e-27	Peptidase M16C associated
M16C_assoc	PF08367	775 - 815	3.3e-06	Peptidase M16C associated
PreP_C	PF22516	887 - 1011	5.9e-62	PreP C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49630 AT1G49630 AT1G49630 AT1G49630 AT1G49630 AT3G19170 AT3G19170
fragaria_vesca	FvH4_2g06380 FvH4_2g06380 FvH4_2g06380 FvH4_2g06380 FvH4_2g06380
malus_domestica	MD05G1078000.v1.1 MD10G1092200.v1.1 MD11G1150900.v1.1
prunus_persica	Prupe.8G122100_v2.0.a1 Prupe.8G122200_v2.0.a1
pyrus_communis	pycom05g07050 pycom05g07160 pycom10g07580
rosa_chinensis	RchiOBHm_Chr6g0258261
rosa_laevigata	RLG00000014634
rosa_multiflora	Rmu_sc0004230.1_g000015
rosa_roxburghii	Rroxscaffold_178G00437220 Rroxscaffold_7G00205380
rosa_rugosa	Rorug05G0579700
rosa_samantha	Rh6AG097600 Rh6BG088700 Rh6CG084700 Rh6DG080800
rosa_wichuraiana	Rw6G008290 Rw6G008350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1098
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	2 cut(s)	83, 1910
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	1284
AccII	CGCG	5 cut(s)	451, 474, 1956, 2387, 2874
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	6 cut(s)	859, 1235, 1244, 1899, 2588, 2921
AcuI	CTGAAG	5 cut(s)	585, 1002, 1997, 2160, 2568
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	6 cut(s)	63, 893, 1031, 1337, 1720, 2796
AfiI	CCNNNNNNNGG	4 cut(s)	386, 949, 1284, 2248
AflIII	ACRYGT	2 cut(s)	6, 121
AgeI	ACCGGT	1 cut(s)	620
AjiI	CACGTC	1 cut(s)	2300
AjnI	CCWGG	2 cut(s)	894, 1277
AjuI	GAANNNNNNNTTGG	4 cut(s)	1599, 1631, 1886, 1918
AleI	CACNNNNGTG	1 cut(s)	2847
AloI	GAACNNNNNNTCC	4 cut(s)	890, 922, 1730, 1762
Alw21I	GWGCWC	3 cut(s)	628, 969, 2178
Alw26I	GTCTC	3 cut(s)	1418, 2714, 2979
Alw44I	GTGCAC	1 cut(s)	624
AlwNI	CAGNNNCTG	1 cut(s)	1760
AoxI	GGCC	2 cut(s)	388, 1054
ApaLI	GTGCAC	1 cut(s)	624
ApoI	RAATTY	6 cut(s)	859, 1235, 1244, 1899, 2588, 2921
ArsI	GACNNNNNNTTYG	2 cut(s)	1730, 1762
AseI	ATTAAT	1 cut(s)	2535
AsiGI	ACCGGT	1 cut(s)	620
Asp700I	GAANNNNTTC	4 cut(s)	8, 2055, 2479, 3038
AspLEI	GCGC	4 cut(s)	453, 476, 1317, 1958
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	2243
AsuHPI	GGTGA	6 cut(s)	643, 811, 1211, 1241, 1451, 1460
AsuNHI	GCTAGC	2 cut(s)	269, 1948
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	2 cut(s)	969, 2178
BarI	GAAGNNNNNNTAC	2 cut(s)	1623, 1655
BauI	CACGAG	2 cut(s)	1824, 1875
BbsI	GAAGAC	2 cut(s)	990, 1074
Bbv12I	GWGCWC	3 cut(s)	628, 969, 2178
BccI	CCATC	4 cut(s)	363, 1272, 2359, 2903
BceAI	ACGGC	2 cut(s)	487, 754
BcgI	CGANNNNNNTGC	4 cut(s)	515, 549, 1739, 1773
BciT130I	CCWGG	2 cut(s)	896, 1279
BcnI	CCSGG	1 cut(s)	2243
BcoDI	GTCTC	3 cut(s)	1418, 2714, 2979
BfaI	CTAG	7 cut(s)	222, 270, 747, 1086, 1340, 1949, 2936
BfmI	CTRYAG	2 cut(s)	1761, 2260
BfoI	RGCGCY	1 cut(s)	1318
BfuAI	ACCTGC	2 cut(s)	83, 1910
BglII	AGATCT	1 cut(s)	1936
BlpI	GCTNAGC	1 cut(s)	1944
Bme1390I	CCNGG	3 cut(s)	896, 1279, 2243
Bme18I	GGWCC	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	2300
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	97, 1407
BmrFI	CCNGG	3 cut(s)	896, 1279, 2243
BmrI	ACTGGG	2 cut(s)	2733, 2925
BmtI	GCTAGC	2 cut(s)	273, 1952
BmuI	ACTGGG	2 cut(s)	2733, 2925
BpiI	GAAGAC	2 cut(s)	990, 1074
BpmI	CTGGAG	2 cut(s)	2226, 3090
Bpu1102I	GCTNAGC	1 cut(s)	1944
BpuEI	CTTGAG	3 cut(s)	38, 1665, 2510
BpuMI	CCSGG	1 cut(s)	2243
BsaAI	YACGTR	2 cut(s)	122, 2036
BsaBI	GATNNNNATC	1 cut(s)	1302
BsaJI	CCNNGG	3 cut(s)	1528, 2242, 2289
BsaWI	WCCGGW	3 cut(s)	620, 1811, 2846
BsaXI	ACNNNNNCTCC	4 cut(s)	1611, 1641, 2082, 2112
Bsc4I	CCNNNNNNNGG	4 cut(s)	386, 949, 1284, 2248
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	7 cut(s)	709, 1102, 1409, 1593, 2209, 2728, 2920
Bse3DI	GCAATG	2 cut(s)	1279, 2619
Bse8I	GATNNNNATC	1 cut(s)	1302
BseBI	CCWGG	2 cut(s)	896, 1279
BseDI	CCNNGG	3 cut(s)	1528, 2242, 2289
BseGI	GGATG	7 cut(s)	904, 1264, 1769, 2370, 2374, 2950, 3124
BseJI	GATNNNNATC	1 cut(s)	1302
BseLI	CCNNNNNNNGG	4 cut(s)	386, 949, 1284, 2248
BseMI	GCAATG	2 cut(s)	1279, 2619
BseNI	ACTGG	7 cut(s)	709, 1102, 1409, 1593, 2209, 2728, 2920
BseRI	GAGGAG	5 cut(s)	313, 316, 373, 448, 2507
BseSI	GKGCMC	1 cut(s)	628
BseX3I	CGGCCG	1 cut(s)	388
BseYI	CCCAGC	2 cut(s)	544, 1035
Bsh1236I	CGCG	5 cut(s)	451, 474, 1956, 2387, 2874
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	390, 1056
BshNI	GGYRCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	620
BsiEI	CGRYCG	1 cut(s)	391
BsiHKAI	GWGCWC	3 cut(s)	628, 969, 2178
BsiSI	CCGG	6 cut(s)	387, 621, 1057, 1812, 2242, 2847
BslI	CCNNNNNNNGG	4 cut(s)	386, 949, 1284, 2248
BsmAI	GTCTC	3 cut(s)	1418, 2714, 2979
BsmBI	CGTCTC	1 cut(s)	2979
BsmI	GAATGC	3 cut(s)	815, 1162, 2644
BsnI	GGCC	2 cut(s)	390, 1056
Bsp1286I	GDGCHC	3 cut(s)	628, 969, 2178
Bsp1720I	GCTNAGC	1 cut(s)	1944
Bsp19I	CCATGG	1 cut(s)	2289
Bsp68I	TCGCGA	1 cut(s)	2874
BspANI	GGCC	2 cut(s)	390, 1056
BspFNI	CGCG	5 cut(s)	451, 474, 1956, 2387, 2874
BspHI	TCATGA	1 cut(s)	1713
BspLI	GGNNCC	2 cut(s)	97, 1407
BspMI	ACCTGC	2 cut(s)	83, 1910
BspOI	GCTAGC	2 cut(s)	273, 1952
BspT107I	GGYRCC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	1279, 2619
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	7 cut(s)	709, 1102, 1409, 1593, 2209, 2728, 2920
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	3 cut(s)	1528, 2242, 2289
BssSI	CACGAG	2 cut(s)	1824, 1875
BssT1I	CCWWGG	2 cut(s)	1528, 2289
Bst2BI	CACGAG	2 cut(s)	1824, 1875
Bst2UI	CCWGG	2 cut(s)	896, 1279
Bst4CI	ACNGT	8 cut(s)	37, 70, 253, 365, 731, 783, 1193, 1253
Bst6I	CTCTTC	3 cut(s)	334, 561, 2442
BstAPI	GCANNNNNTGC	2 cut(s)	2300, 3065
BstBAI	YACGTR	2 cut(s)	122, 2036
BstC8I	GCNNGC	5 cut(s)	271, 956, 1524, 1950, 1954
BstDSI	CCRYGG	1 cut(s)	2289
BstF5I	GGATG	7 cut(s)	904, 1264, 1769, 2370, 2374, 2950, 3124
BstFNI	CGCG	5 cut(s)	451, 474, 1956, 2387, 2874
BstH2I	RGCGCY	1 cut(s)	1318
BstHHI	GCGC	4 cut(s)	453, 476, 1317, 1958
BstMAI	GTCTC	3 cut(s)	1418, 2714, 2979
BstMCI	CGRYCG	1 cut(s)	391
BstNI	CCWGG	2 cut(s)	896, 1279
BstSCI	CCNGG	3 cut(s)	894, 1277, 2241
BstSFI	CTRYAG	2 cut(s)	1761, 2260
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	5 cut(s)	451, 474, 1956, 2387, 2874
BstV2I	GAAGAC	2 cut(s)	990, 1074
BstX2I	RGATCY	3 cut(s)	227, 263, 1936
BstYI	RGATCY	3 cut(s)	227, 263, 1936
BstZI	CGGCCG	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	390, 1056
BtgI	CCRYGG	1 cut(s)	2289
BtgZI	GCGATG	1 cut(s)	341
BtrI	CACGTC	1 cut(s)	2300
BtsCI	GGATG	7 cut(s)	904, 1264, 1769, 2370, 2374, 2950, 3124
BtsI	GCAGTG	1 cut(s)	3102
BtsIMutI	CAGTG	6 cut(s)	736, 1198, 2092, 2136, 2225, 3102
BtuMI	TCGCGA	1 cut(s)	2874
BveI	ACCTGC	2 cut(s)	83, 1910
Cac8I	GCNNGC	5 cut(s)	271, 956, 1524, 1950, 1954
CaiI	CAGNNNCTG	1 cut(s)	1760
CciI	TCATGA	1 cut(s)	1713
CfoI	GCGC	4 cut(s)	453, 476, 1317, 1958
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	6 cut(s)	62, 892, 1030, 1336, 1719, 2795
CspAI	ACCGGT	1 cut(s)	620
CspCI	CAANNNNNGTGG	6 cut(s)	702, 737, 903, 938, 2056, 2091
CviAII	CATG	8 cut(s)	1468, 1714, 1774, 1852, 2108, 2290, 2345, 2778
CviQI	GTAC	6 cut(s)	62, 892, 1030, 1336, 1719, 2795
DraIII	CACNNNGTG	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	388
EagI	CGGCCG	1 cut(s)	388
Eam1104I	CTCTTC	3 cut(s)	334, 561, 2442
EarI	CTCTTC	3 cut(s)	334, 561, 2442
EciI	GGCGGA	3 cut(s)	276, 389, 1751
Ecl136II	GAGCTC	2 cut(s)	967, 2176
EclXI	CGGCCG	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	1528, 2289
Eco24I	GRGCYC	2 cut(s)	969, 2178
Eco32I	GATATC	1 cut(s)	2214
Eco47I	GGWCC	1 cut(s)	146
Eco52I	CGGCCG	1 cut(s)	388
Eco53kI	GAGCTC	2 cut(s)	967, 2176
Eco57I	CTGAAG	5 cut(s)	585, 1002, 1997, 2160, 2568
EcoICRI	GAGCTC	2 cut(s)	967, 2176
EcoRII	CCWGG	2 cut(s)	894, 1277
EcoRV	GATATC	1 cut(s)	2214
EcoT14I	CCWWGG	2 cut(s)	1528, 2289
EcoT22I	ATGCAT	2 cut(s)	817, 1478
EcoT38I	GRGCYC	2 cut(s)	969, 2178
ErhI	CCWWGG	2 cut(s)	1528, 2289
Esp3I	CGTCTC	1 cut(s)	2979
FaeI	CATG	8 cut(s)	1471, 1717, 1777, 1855, 2111, 2293, 2348, 2781
FalI	AAGNNNNNCTT	4 cut(s)	1923, 1955, 2163, 2195
FatI	CATG	8 cut(s)	1467, 1713, 1773, 1851, 2107, 2289, 2344, 2777
FauI	CCCGC	4 cut(s)	51, 236, 433, 2380
FauNDI	CATATG	3 cut(s)	1228, 2749, 2815
FokI	GGATG	7 cut(s)	911, 1251, 1756, 2377, 2381, 2957, 3131
FriOI	GRGCYC	2 cut(s)	969, 2178
FspBI	CTAG	7 cut(s)	222, 270, 747, 1086, 1340, 1949, 2936
GlaI	GCGC	4 cut(s)	452, 475, 1316, 1957
GsaI	CCCAGC	2 cut(s)	548, 1039
GsuI	CTGGAG	2 cut(s)	2226, 3090
HaeII	RGCGCY	1 cut(s)	1318
HaeIII	GGCC	2 cut(s)	390, 1056
HapII	CCGG	6 cut(s)	387, 621, 1057, 1812, 2242, 2847
HhaI	GCGC	4 cut(s)	453, 476, 1317, 1958
Hin1II	CATG	8 cut(s)	1471, 1717, 1777, 1855, 2111, 2293, 2348, 2781
Hin6I	GCGC	4 cut(s)	451, 474, 1315, 1956
HinP1I	GCGC	4 cut(s)	451, 474, 1315, 1956
HindIII	AAGCTT	1 cut(s)	1869
HinfI	GANTC	9 cut(s)	312, 370, 549, 698, 708, 1373, 2497, 2557, 2993
HpaII	CCGG	6 cut(s)	387, 621, 1057, 1812, 2242, 2847
HphI	GGTGA	6 cut(s)	643, 811, 1211, 1241, 1451, 1460
Hpy166II	GTNNAC	7 cut(s)	626, 892, 1030, 1189, 1721, 2162, 2795
Hpy8I	GTNNAC	7 cut(s)	626, 892, 1030, 1189, 1721, 2162, 2795
Hpy99I	CGWCG	1 cut(s)	653
HpyCH4III	ACNGT	8 cut(s)	37, 70, 253, 365, 731, 783, 1193, 1253
HpyCH4IV	ACGT	5 cut(s)	6, 121, 2035, 2299, 2988
HpySE526I	ACGT	5 cut(s)	6, 121, 2035, 2299, 2988
Hsp92II	CATG	8 cut(s)	1471, 1717, 1777, 1855, 2111, 2293, 2348, 2781
HspAI	GCGC	4 cut(s)	451, 474, 1315, 1956
LmnI	GCTCC	6 cut(s)	326, 792, 1109, 1369, 2181, 2810
MaeI	CTAG	7 cut(s)	222, 270, 747, 1086, 1340, 1949, 2936
MaeII	ACGT	5 cut(s)	6, 121, 2035, 2299, 2988
MaeIII	GTNAC	4 cut(s)	1448, 2036, 2420, 2840
MfeI	CAATTG	3 cut(s)	1480, 2979, 3060
MflI	RGATCY	3 cut(s)	227, 263, 1936
MhlI	GDGCHC	3 cut(s)	628, 969, 2178
MmeI	TCCRAC	5 cut(s)	400, 669, 1331, 2372, 2677
Mph1103I	ATGCAT	2 cut(s)	817, 1478
MroXI	GAANNNNTTC	4 cut(s)	8, 2055, 2479, 3038
MslI	CAYNNNNRTG	2 cut(s)	2782, 2847
MspA1I	CMGCKG	4 cut(s)	131, 544, 1757, 1889
MspI	CCGG	6 cut(s)	387, 621, 1057, 1812, 2242, 2847
MspR9I	CCNGG	3 cut(s)	896, 1279, 2243
MunI	CAATTG	3 cut(s)	1480, 2979, 3060
Mva1269I	GAATGC	3 cut(s)	815, 1162, 2644
MvaI	CCWGG	2 cut(s)	896, 1279
MvnI	CGCG	5 cut(s)	451, 474, 1956, 2387, 2874
NciI	CCSGG	1 cut(s)	2243
NcoI	CCATGG	1 cut(s)	2289
NdeI	CATATG	3 cut(s)	1228, 2749, 2815
NheI	GCTAGC	2 cut(s)	269, 1948
NlaIII	CATG	8 cut(s)	1471, 1717, 1777, 1855, 2111, 2293, 2348, 2781
NlaIV	GGNNCC	2 cut(s)	97, 1407
NmuCI	GTSAC	3 cut(s)	1448, 2036, 2840
NruI	TCGCGA	1 cut(s)	2874
NsiI	ATGCAT	2 cut(s)	817, 1478
OliI	CACNNNNGTG	1 cut(s)	2847
PagI	TCATGA	1 cut(s)	1713
PaqCI	CACCTGC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	1746
PctI	GAATGC	3 cut(s)	815, 1162, 2644
PdmI	GAANNNNTTC	4 cut(s)	8, 2055, 2479, 3038
PfeI	GAWTC	9 cut(s)	312, 370, 549, 698, 708, 1373, 2497, 2557, 2993
PflMI	CCANNNNNTGG	1 cut(s)	1284
PinAI	ACCGGT	1 cut(s)	620
Ppu21I	YACGTR	2 cut(s)	122, 2036
PshBI	ATTAAT	1 cut(s)	2535
PsiI	TTATAA	1 cut(s)	1098
Psp124BI	GAGCTC	2 cut(s)	969, 2178
Psp6I	CCWGG	2 cut(s)	894, 1277
PspFI	CCCAGC	2 cut(s)	544, 1035
PspGI	CCWGG	2 cut(s)	894, 1277
PspN4I	GGNNCC	2 cut(s)	97, 1407
PspPI	GGNCC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	1760
PsuI	RGATCY	3 cut(s)	227, 263, 1936
PvuII	CAGCTG	4 cut(s)	131, 544, 1757, 1889
RruI	TCGCGA	1 cut(s)	2874
RsaI	GTAC	6 cut(s)	63, 893, 1031, 1337, 1720, 2796
RsaNI	GTAC	6 cut(s)	62, 892, 1030, 1336, 1719, 2795
RseI	CAYNNNNRTG	2 cut(s)	2782, 2847
SacI	GAGCTC	2 cut(s)	969, 2178
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	896, 1279, 2243
SduI	GDGCHC	3 cut(s)	628, 969, 2178
SfcI	CTRYAG	2 cut(s)	1761, 2260
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	2782, 2847
SmlI	CTYRAG	3 cut(s)	17, 1680, 2489
SmoI	CTYRAG	3 cut(s)	17, 1680, 2489
SspI	AATATT	2 cut(s)	1259, 1584
SspMI	CTAG	7 cut(s)	222, 270, 747, 1086, 1340, 1949, 2936
SstI	GAGCTC	2 cut(s)	969, 2178
StyD4I	CCNGG	3 cut(s)	894, 1277, 2241
StyI	CCWWGG	2 cut(s)	1528, 2289
TaaI	ACNGT	8 cut(s)	37, 70, 253, 365, 731, 783, 1193, 1253
TaiI	ACGT	5 cut(s)	9, 124, 2038, 2302, 2991
TaqI	TCGA	8 cut(s)	310, 552, 701, 885, 1376, 1749, 1846, 2278
TatI	WGTACW	2 cut(s)	1029, 1718
TauI	GCSGC	3 cut(s)	393, 405, 431
TfiI	GAWTC	9 cut(s)	312, 370, 549, 698, 708, 1373, 2497, 2557, 2993
TscAI	CASTG	6 cut(s)	736, 1198, 2092, 2143, 2232, 3102
TseFI	GTSAC	3 cut(s)	1448, 2036, 2840
Tsp45I	GTSAC	3 cut(s)	1448, 2036, 2840
TspRI	CASTG	6 cut(s)	736, 1198, 2092, 2143, 2232, 3102
Van91I	CCANNNNNTGG	1 cut(s)	1284
VneI	GTGCAC	1 cut(s)	624
VpaK11BI	GGWCC	1 cut(s)	146
VspI	ATTAAT	1 cut(s)	2535
XapI	RAATTY	6 cut(s)	859, 1235, 1244, 1899, 2588, 2921
XmnI	GAANNNNTTC	4 cut(s)	8, 2055, 2479, 3038
XspI	CTAG	7 cut(s)	222, 270, 747, 1086, 1340, 1949, 2936
Zsp2I	ATGCAT	2 cut(s)	817, 1478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.