RLG00000014634

Presequence protease 1, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
55581561 .. 55600255
18695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014634

Sequence Viewer

Length: 2217 bp
ATGTTTGATGCAAGTTCAGCTCCAAATGAATCAAGGGTTCAAACACAAAAACTATTTTCGGAACCAGTTAGGATTTCTGAGACATATCCTGCTGGTGAAGGCGGTGACTTAAAGAAAAAAGACATGGTATGCATCAATTGGCTGCTCTCTGAGAAACCCTTGGACTTGGAAACTGAGCTTGCCCTTGGGTTTTTGGATCATCTTATGTTGGGAACTCCTGCCTCTCCATTGAGGAAAATATTACTGGAAAGTGGCTTGGGAGAAGCTATCATTGGAGGTGGGGTTGAAGATGAGCTACTTCAACCTCAATTTAGTATTGGGTTGAAGGGTGTTTCCCATGATGATATTCAAAAGGTTGAAGAATTAGTCATGAGTACGCTTAAAAAATTGGCAGACGAAGGGTTCGATACAGCTGCTGTAGAAGCATCCATGAACACCATTGAGTTTTCTCTCAGGGAAAACAACACTGGATCATTTCCTCGTGGGTTGTCCTTAATGCTTCGATCCATGGGTAAGTGGATATATGATATGGATCCATTGCAGCCATTGAAGTATGAGAAACCTTTACTGGCACTAAAAGCAAGAATAGAACAAGAAGGCTCTAAAGCCGTTTTCTCTCCTTTAATAGAGAAATTCATTTTGAACAATCCTCATCGAGTTGTGGTAGAAATGCAGCCTGACCCAGAAAAAGCTTCTCGTGATGAAGCAGCTGAGAAAGAAATTTTGGAGAAAGTAAAAGCAGGTATGACAGAAGAAGATCTTGCTGAGCTAGCACGCGCTACACAAGAACTGAAACTGAAGCAGGAAACTCCTGATCCACCAGAAGCTCTGAGAAGTGTTCCAAGCCTCTCTCTGTGTGACATTCCAAAGGAACCTATTCTTGTTCCCACAGAGGTTGGGGAGATCAGTGGAGTTAAAGTTTTGCAGCACGACCTTTTCACAAATGATGTTCTCTACACTGAAGTTGTGTTCAATATGAGTTCATTAAAGCAAGAGCTCCTTCCTTTGGTACCTCTCTTTTGTCAATCATTGCTGGAGATGGGAACCAAAGATTTGAGTTTTGTGCAACTTAATCAGTTGATTGGAAGAAAAACTGGAGGGATATCAGTTTATCCACTGACATCATCTGTCCGGGGCAAGGAAGATGCCTGTAGCCATATAATTGTTCGAGGCAAAGCCATGGCAGGACGTGCTGATGATCTATTTCATCTGATCAACTGTATTCTTCAAGAAGTCCAATTTACAGACCAGCAGCGGTTTAAGCAGTTTGTTTCCCAAAGCAAAGCTAGAATGGAGAACCGATTGAGAGGTAGCGGTCATGGAATTGCTGCTGCAAGGATGGATGCAAAGCTAAATGTCGCGGGTTGGATTTCTGAACAAATGGGTGGTTTCAGTTACTTGGAGTTTCTGCAAGCTCTTGAAGAGAAAGTTGATGATGATTGGGAGAGAATATCTTCATCTCTTGAGGAGATTCGCAAGTCCTTACTTTCACGGGAAGGTTGCTTGATTAATATGACTGCTGAAGGAAAGAATCTTACCAACTCTCAGAAGTTTGTTGGCAAATTTCTGGATTTGCTGCCTCGCAATTCTCCCGTTGCAGCAACTACTTGGAATGCTCGATTACCTTCTACAAATGAAGCCATTGTTATACCTACTCAGGTTAATTATGTTGGAAAAGCAGCCAACATTTATGAGACTGGGTATCAGCTTAATGGAACTGCATATGTTATCTCCAAATACATAAGTAATACATGGTTGTGGGATCGTGTACGAGTTAGTGGTGGAGCATATGGAGGCTTTTGCGACTTTGATAGTCACTCCGGTGTGTTCTCCTTCTTATCTTATCGCGACCCCAACTTGTTAAAGACACTTGATATATATGATGGAACTGGGGAATTTCTTAGACAACTAGATATGGATGAAGAAACTCTCACAAAGTCCATTATTGGAACAATTGGAGATGTTGATTCATACCAGCTTCCTGATGCCAAAGGTTATAGTAGTTTGATGCGGCATTTATTGGGAGTTTCAGATGAGGAAAGGAAAATTAGACGAGAAGAAATATTGTCAACCAGATTGAAGGACTTCAAGGAGTTTGCAAATGCAATTGATGCAGTTAAAGACAAAGGGGTTGCTGTTGCAGTGGCATCTCCAGATGATGTTGACGCAGCACAAAAGGAAAGATCAAACTTATTTGAAGTGAAGAATGCCCTCTAA

Protein Analysis

739

Amino Acids

82.0

Weight (kDa)

5.02

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_C PF05193 19 - 145 6.9e-12 Peptidase M16 inactive domain
M16C_assoc PF08367 224 - 473 5.1e-77 Peptidase M16C associated
PreP_C PF22516 545 - 717 2.2e-79 PreP C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 731
Acc65I GGTACC 1 cut(s) 1009
AccB1I GGYRCC 1 cut(s) 1009
AccII CGCG 3 cut(s) 777, 1361, 1848
AciI CCGC 5 cut(s) 102, 1255, 1314, 1361, 2011
AclWI GGATC 7 cut(s) 204, 478, 498, 527, 540, 809, 1770
AcsI RAATTY 4 cut(s) 632, 720, 1562, 1895
AcuI CTGAAG 3 cut(s) 818, 981, 1542
AfaI GTAC 3 cut(s) 376, 1011, 1770
AfiI CCNNNNNNNGG 2 cut(s) 1006, 1138
AjiI CACGTC 1 cut(s) 1190
AjuI GAANNNNNNNTTGG 4 cut(s) 255, 287, 707, 739
AleI CACNNNNGTG 1 cut(s) 1821
Alw21I GWGCWC 1 cut(s) 999
Alw26I GTCTC 2 cut(s) 74, 1688
AlwI GGATC 7 cut(s) 204, 478, 498, 527, 540, 809, 1770
AlwNI CAGNNNCTG 1 cut(s) 416
ApoI RAATTY 4 cut(s) 632, 720, 1562, 1895
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AseI ATTAAT 1 cut(s) 1509
Asp700I GAANNNNTTC 3 cut(s) 876, 1453, 2084
Asp718I GGTACC 1 cut(s) 1009
AspLEI GCGC 1 cut(s) 779
AsuC2I CCSGG 1 cut(s) 1133
AsuHPI GGTGA 2 cut(s) 107, 116
AsuNHI GCTAGC 1 cut(s) 769
BamHI GGATCC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 1009
BanII GRGCYC 1 cut(s) 999
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
BauI CACGAG 2 cut(s) 480, 696
Bbv12I GWGCWC 1 cut(s) 999
BccI CCATC 3 cut(s) 1033, 1333, 1877
BceAI ACGGC 1 cut(s) 593
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BclI TGATCA 1 cut(s) 1212
BcnI CCSGG 1 cut(s) 1133
BcoDI GTCTC 2 cut(s) 74, 1688
BfaI CTAG 3 cut(s) 770, 1287, 1910
BfmI CTRYAG 2 cut(s) 417, 1150
BfuAI ACCTGC 1 cut(s) 731
BglII AGATCT 1 cut(s) 757
BlpI GCTNAGC 1 cut(s) 765
Bme1390I CCNGG 1 cut(s) 1133
BmgBI CACGTC 1 cut(s) 1190
BmiI GGNNCC 5 cut(s) 63, 534, 873, 1011, 1045
BmrFI CCNGG 1 cut(s) 1133
BmrI ACTGGG 2 cut(s) 1707, 1899
BmsI GCATC 8 cut(s) 141, 434, 1135, 1333, 1975, 1998, 2101, 2156
BmtI GCTAGC 1 cut(s) 773
BmuI ACTGGG 2 cut(s) 1707, 1899
BpmI CTGGAG 3 cut(s) 1055, 1116, 2136
Bpu1102I GCTNAGC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 1484
BpuMI CCSGG 1 cut(s) 1133
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 5 cut(s) 159, 184, 507, 1132, 1179
BsaWI WCCGGW 1 cut(s) 1820
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 903, 933
Bsc4I CCNNNNNNNGG 2 cut(s) 1006, 1138
Bse1I ACTGG 7 cut(s) 65, 249, 472, 573, 1099, 1702, 1894
Bse3DI GCAATG 2 cut(s) 536, 1028
Bse8I GATNNNNATC 1 cut(s) 531
BseDI CCNNGG 5 cut(s) 159, 184, 507, 1132, 1179
BseGI GGATG 4 cut(s) 425, 1344, 1348, 1924
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 1006, 1138
BseMI GCAATG 2 cut(s) 536, 1028
BseMII CTCAG 9 cut(s) 69, 141, 165, 466, 702, 756, 821, 1559, 1670
BseNI ACTGG 7 cut(s) 65, 249, 472, 573, 1099, 1702, 1894
BseRI GAGGAG 1 cut(s) 1481
Bsh1236I CGCG 3 cut(s) 777, 1361, 1848
BshNI GGYRCC 1 cut(s) 1009
BsiHKAI GWGCWC 1 cut(s) 999
BsiSI CCGG 2 cut(s) 1132, 1821
BslI CCNNNNNNNGG 2 cut(s) 1006, 1138
BsmAI GTCTC 2 cut(s) 74, 1688
BsmI GAATGC 2 cut(s) 1618, 2212
Bsp1286I GDGCHC 1 cut(s) 999
Bsp1720I GCTNAGC 1 cut(s) 765
Bsp19I CCATGG 2 cut(s) 507, 1179
Bsp68I TCGCGA 1 cut(s) 1848
BspACI CCGC 5 cut(s) 102, 1255, 1314, 1361, 2011
BspCNI CTCAG 9 cut(s) 70, 142, 166, 465, 703, 757, 822, 1558, 1669
BspFNI CGCG 3 cut(s) 777, 1361, 1848
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 5 cut(s) 63, 534, 873, 1011, 1045
BspMI ACCTGC 1 cut(s) 731
BspOI GCTAGC 1 cut(s) 773
BspPI GGATC 7 cut(s) 204, 478, 498, 527, 540, 809, 1770
BspT107I GGYRCC 1 cut(s) 1009
BsrDI GCAATG 2 cut(s) 536, 1028
BsrI ACTGG 7 cut(s) 65, 249, 472, 573, 1099, 1702, 1894
BssECI CCNNGG 5 cut(s) 159, 184, 507, 1132, 1179
BssSI CACGAG 2 cut(s) 480, 696
BssT1I CCWWGG 4 cut(s) 159, 184, 507, 1179
Bst2BI CACGAG 2 cut(s) 480, 696
Bst4CI ACNGT 1 cut(s) 1220
Bst6I CTCTTC 1 cut(s) 1416
BstAPI GCANNNNNTGC 2 cut(s) 1190, 2111
BstC8I GCNNGC 4 cut(s) 180, 771, 775, 1413
BstDSI CCRYGG 2 cut(s) 507, 1179
BstF5I GGATG 4 cut(s) 425, 1344, 1348, 1924
BstFNI CGCG 3 cut(s) 777, 1361, 1848
BstHHI GCGC 1 cut(s) 779
BstMAI GTCTC 2 cut(s) 74, 1688
BstMWI GCNNNNNNNGC 7 cut(s) 17, 422, 578, 770, 1190, 1261, 2111
BstSCI CCNGG 1 cut(s) 1131
BstSFI CTRYAG 2 cut(s) 417, 1150
BstUI CGCG 3 cut(s) 777, 1361, 1848
BstX2I RGATCY 2 cut(s) 532, 757
BstYI RGATCY 2 cut(s) 532, 757
BtgI CCRYGG 2 cut(s) 507, 1179
BtrI CACGTC 1 cut(s) 1190
BtsCI GGATG 4 cut(s) 425, 1344, 1348, 1924
BtsI GCAGTG 1 cut(s) 2148
BtsIMutI CAGTG 5 cut(s) 465, 913, 957, 1115, 2148
BtuMI TCGCGA 1 cut(s) 1848
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 4 cut(s) 180, 771, 775, 1413
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 1 cut(s) 369
CfoI GCGC 1 cut(s) 779
CseI GACGC 1 cut(s) 2174
Csp6I GTAC 3 cut(s) 375, 1010, 1769
CspCI CAANNNNNGTGG 2 cut(s) 877, 912
CviAII CATG 8 cut(s) 124, 338, 370, 430, 508, 1180, 1319, 1752
CviQI GTAC 3 cut(s) 375, 1010, 1769
Eam1104I CTCTTC 1 cut(s) 1416
EarI CTCTTC 1 cut(s) 1416
Ecl136II GAGCTC 1 cut(s) 997
Eco130I CCWWGG 4 cut(s) 159, 184, 507, 1179
Eco24I GRGCYC 1 cut(s) 999
Eco32I GATATC 1 cut(s) 1104
Eco53kI GAGCTC 1 cut(s) 997
Eco57I CTGAAG 3 cut(s) 818, 981, 1542
EcoICRI GAGCTC 1 cut(s) 997
EcoRV GATATC 1 cut(s) 1104
EcoT14I CCWWGG 4 cut(s) 159, 184, 507, 1179
EcoT22I ATGCAT 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 999
ErhI CCWWGG 4 cut(s) 159, 184, 507, 1179
FaeI CATG 8 cut(s) 127, 341, 373, 433, 511, 1183, 1322, 1755
FalI AAGNNNNNCTT 4 cut(s) 744, 776, 984, 1016
FatI CATG 8 cut(s) 123, 337, 369, 429, 507, 1179, 1318, 1751
FauI CCCGC 1 cut(s) 1354
FauNDI CATATG 2 cut(s) 1723, 1789
FbaI TGATCA 1 cut(s) 1212
FokI GGATG 4 cut(s) 412, 1351, 1355, 1931
FriOI GRGCYC 1 cut(s) 999
FspBI CTAG 3 cut(s) 770, 1287, 1910
GlaI GCGC 1 cut(s) 778
GsuI CTGGAG 3 cut(s) 1055, 1116, 2136
HapII CCGG 2 cut(s) 1132, 1821
HgaI GACGC 1 cut(s) 2174
HhaI GCGC 1 cut(s) 779
Hin1II CATG 8 cut(s) 127, 341, 373, 433, 511, 1183, 1322, 1755
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HincII GTYRAC 2 cut(s) 2070, 2164
HindII GTYRAC 2 cut(s) 2070, 2164
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 4 cut(s) 29, 1471, 1531, 1967
HpaII CCGG 2 cut(s) 1132, 1821
HphI GGTGA 2 cut(s) 107, 116
Hpy166II GTNNAC 3 cut(s) 1769, 2070, 2164
Hpy188I TCNGA 8 cut(s) 61, 79, 151, 831, 1212, 1375, 1548, 2032
Hpy8I GTNNAC 3 cut(s) 1769, 2070, 2164
HpyCH4III ACNGT 1 cut(s) 1220
HpyCH4IV ACGT 1 cut(s) 1189
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 422, 578, 770, 1190, 1261, 2111
HpySE526I ACGT 1 cut(s) 1189
Hsp92II CATG 8 cut(s) 127, 341, 373, 433, 511, 1183, 1322, 1755
HspAI GCGC 1 cut(s) 777
KpnI GGTACC 1 cut(s) 1013
Ksp22I TGATCA 1 cut(s) 1212
LmnI GCTCC 3 cut(s) 25, 1002, 1784
LweI GCATC 8 cut(s) 141, 434, 1135, 1333, 1975, 1998, 2101, 2156
MaeI CTAG 3 cut(s) 770, 1287, 1910
MaeII ACGT 1 cut(s) 1189
MaeIII GTNAC 4 cut(s) 104, 857, 1394, 1814
MfeI CAATTG 3 cut(s) 136, 1953, 2106
MflI RGATCY 2 cut(s) 532, 757
MhlI GDGCHC 1 cut(s) 999
MmeI TCCRAC 2 cut(s) 1346, 1651
Mph1103I ATGCAT 1 cut(s) 134
MroXI GAANNNNTTC 3 cut(s) 876, 1453, 2084
MslI CAYNNNNRTG 2 cut(s) 1756, 1821
MspA1I CMGCKG 3 cut(s) 413, 710, 1255
MspI CCGG 2 cut(s) 1132, 1821
MspR9I CCNGG 1 cut(s) 1133
MunI CAATTG 3 cut(s) 136, 1953, 2106
Mva1269I GAATGC 2 cut(s) 1618, 2212
MvnI CGCG 3 cut(s) 777, 1361, 1848
MwoI GCNNNNNNNGC 7 cut(s) 17, 422, 578, 770, 1190, 1261, 2111
NciI CCSGG 1 cut(s) 1133
NcoI CCATGG 2 cut(s) 507, 1179
NdeI CATATG 2 cut(s) 1723, 1789
NheI GCTAGC 1 cut(s) 769
NlaIII CATG 8 cut(s) 127, 341, 373, 433, 511, 1183, 1322, 1755
NlaIV GGNNCC 5 cut(s) 63, 534, 873, 1011, 1045
NmuCI GTSAC 3 cut(s) 104, 857, 1814
NruI TCGCGA 1 cut(s) 1848
NsiI ATGCAT 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 1821
PagI TCATGA 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 2 cut(s) 1618, 2212
PdmI GAANNNNTTC 3 cut(s) 876, 1453, 2084
PfeI GAWTC 4 cut(s) 29, 1471, 1531, 1967
PshBI ATTAAT 1 cut(s) 1509
Psp124BI GAGCTC 1 cut(s) 999
PspN4I GGNNCC 5 cut(s) 63, 534, 873, 1011, 1045
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 532, 757
PvuII CAGCTG 2 cut(s) 413, 710
RruI TCGCGA 1 cut(s) 1848
RsaI GTAC 3 cut(s) 376, 1011, 1770
RsaNI GTAC 3 cut(s) 375, 1010, 1769
RseI CAYNNNNRTG 2 cut(s) 1756, 1821
SacI GAGCTC 1 cut(s) 999
ScrFI CCNGG 1 cut(s) 1133
SduI GDGCHC 1 cut(s) 999
SfaNI GCATC 8 cut(s) 141, 434, 1135, 1333, 1975, 1998, 2101, 2156
SfcI CTRYAG 2 cut(s) 417, 1150
SmiMI CAYNNNNRTG 2 cut(s) 1756, 1821
SmlI CTYRAG 1 cut(s) 1463
SmoI CTYRAG 1 cut(s) 1463
SsiI CCGC 5 cut(s) 102, 1255, 1314, 1361, 2011
SspI AATATT 2 cut(s) 240, 2064
SspMI CTAG 3 cut(s) 770, 1287, 1910
SstI GAGCTC 1 cut(s) 999
StyD4I CCNGG 1 cut(s) 1131
StyI CCWWGG 4 cut(s) 159, 184, 507, 1179
TaaI ACNGT 1 cut(s) 1220
TaiI ACGT 1 cut(s) 1192
TaqI TCGA 5 cut(s) 405, 502, 655, 1168, 1618
TauI GCSGC 1 cut(s) 2014
TfiI GAWTC 4 cut(s) 29, 1471, 1531, 1967
TscAI CASTG 5 cut(s) 472, 913, 964, 1122, 2148
TseFI GTSAC 3 cut(s) 104, 857, 1814
Tsp45I GTSAC 3 cut(s) 104, 857, 1814
TspRI CASTG 5 cut(s) 472, 913, 964, 1122, 2148
VspI ATTAAT 1 cut(s) 1509
XapI RAATTY 4 cut(s) 632, 720, 1562, 1895
XmnI GAANNNNTTC 3 cut(s) 876, 1453, 2084
XspI CTAG 3 cut(s) 770, 1287, 1910
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.