Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007621

Physical Location & Seq

Genomic Coordinates Forward (+)

20585273 .. 20587435

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCCATCCGGAGATCAGCTGCAAAGCAGCTTACTCATATGGGGGTCCCTTCAACAGTGTCTTCATCCTTACCAGTCCTTCCAACTTCTTTGGAAGAGACACATCCTAAGTTGCCAGACTCCCAACAGGTTTCCATTGAAAGAGAACTTATGACAAGGCCTGTTGTGCATGCTGGTCACTTAACCTCCAACAGTGGAGTAGTTGGTCACATATTTTCGTCATCATCGGGATTTTCAACAGATCTTCACTACTCAACTCTTTCACCTCATGAAAAACAGCCAAAAAACTCTCCTTTCATTTCTCAGTCATCGAGTTCTGCAGCTTTGCCATTACCGCATTCTCCTCATTCGGGATTTCTTCAGTCAACAGAATCTTGTCCTTATCCCAAAGAAAACAGTGGTTCCTGGTGTACAGATCCACTGCCAGGTTTCCTTGATTTTCCTGTAAATAACCATATCGAGAATAGTCAAATAGAGAGCAGTAGTTGTAGCGGCATAATGGCTGCTGATGAATTTGTTAAGAGACATGATTGGCAGGAATGGGCAGATCAGCTAATTACTGATGACGATGCTTTAACTTCTAACTGGAATGAGCTTCTTGTTGACAAAGTTACAGATCTGGAACAAAAGATGAAATACCAGGCTCCCAAACCGTCTTCAAATTTTTCGGTTCAGCAGTCCCAAGTTCATCAGCAACAACCCGCTTCATCTGGGGAAATCATTCCTGCTTCATCTGGGGAAATCATTCCTGCTCCATCTAGGGAAATCATTTCTGTTGCTGCTCCTTCTTCAGCTAATAGTGCCACTGCCAAGGCACGCATGCGTTGGACGCCTGAACTTCATGAGGCCTTTGTGGAGGCTGTTAACCAACTTGGCGGTAGTGAAAGAGCAACTCCTAAGGGTGTGCTAAAGCTCATGAAAGTTGAAGGCTTGACTATCTATCATGTGAAAAGTCACTTGCAGAAATATAGGACTGCTAGATACAGACCAGAGTCATCTGAAGGCGCCTTGGAGAAGAAATTGACTCCAATTGAAGAAATGACGTCTCTTGACTTGAAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

355

Amino Acids

38.76

Weight (kDa)

6.01

Isoelectric Point (pI)

69.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	273 - 324	6e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28610
fragaria_vesca	FvH4_2g20730 FvH4_2g20730
malus_domestica	MD00G1060900.v1.1 MD05G1189400.v1.1
prunus_persica	Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1
pyrus_communis	pycom05g17450 pycom10g15330
rosa_chinensis	RchiOBHm_Chr6g0286911
rosa_laevigata	RLG00000012527
rosa_multiflora	Rmu_sc0002520.1_g000011
rosa_roxburghii	Rroxscaffold_7G00181810
rosa_rugosa	Rorug06G0184800 Rorug06G0184900 Rorug06G0185000
rosa_samantha	Rh6AG296700 Rh6BG301300 Rh6CG308800 Rh6DG292600
rosa_wichuraiana	Rw6G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1046
AccB1I	GGYRCC	1 cut(s)	1004
AccIII	TCCGGA	1 cut(s)	9
AciI	CCGC	4 cut(s)	335, 492, 702, 876
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	512, 661
AcuI	CTGAAG	3 cut(s)	344, 774, 1020
AcyI	GRCGYC	3 cut(s)	830, 1005, 1043
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	350, 425
AgsI	TTSAA	7 cut(s)	54, 140, 237, 660, 926, 1034, 1057
AjnI	CCWGG	3 cut(s)	404, 424, 639
AluBI	AGCT	7 cut(s)	20, 31, 323, 553, 595, 794, 913
AluI	AGCT	7 cut(s)	20, 31, 323, 553, 595, 794, 913
Alw26I	GTCTC	3 cut(s)	92, 517, 1050
AlwI	GGATC	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	9
AoxI	GGCC	2 cut(s)	158, 846
ApeKI	GCWGC	5 cut(s)	20, 28, 320, 503, 779
ApoI	RAATTY	2 cut(s)	512, 661
Asp700I	GAANNNNTTC	2 cut(s)	720, 744
AspLEI	GCGC	1 cut(s)	1007
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	897
BanI	GGYRCC	1 cut(s)	1004
BbsI	GAAGAC	2 cut(s)	54, 648
BbvI	GCAGC	5 cut(s)	7, 40, 332, 490, 766
BccI	CCATC	2 cut(s)	14, 763
BciT130I	CCWGG	3 cut(s)	406, 426, 641
BcoDI	GTCTC	3 cut(s)	92, 517, 1050
BfaI	CTAG	2 cut(s)	759, 978
BfmI	CTRYAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	1008
BglII	AGATCT	2 cut(s)	241, 616
BisI	GCNGC	6 cut(s)	21, 29, 321, 493, 504, 780
BlsI	GCNGC	6 cut(s)	22, 30, 322, 494, 505, 781
Bme1390I	CCNGG	3 cut(s)	406, 426, 641
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	5 cut(s)	47, 48, 403, 645, 1006
BmrFI	CCNGG	3 cut(s)	406, 426, 641
BmsI	GCATC	1 cut(s)	559
BoxI	GACNNNNGTC	1 cut(s)	991
BpiI	GAAGAC	2 cut(s)	54, 648
BsaHI	GRCGYC	3 cut(s)	830, 1005, 1043
BsaJI	CCNNGG	2 cut(s)	810, 1008
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 425
Bse1I	ACTGG	2 cut(s)	74, 590
Bse21I	CCTNAGG	1 cut(s)	897
BseAI	TCCGGA	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	406, 426, 641
BseDI	CCNNGG	2 cut(s)	810, 1008
BseGI	GGATG	3 cut(s)	6, 65, 103
BseLI	CCNNNNNNNGG	2 cut(s)	350, 425
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	74, 590
BseRI	GAGGAG	1 cut(s)	333
BseXI	GCAGC	5 cut(s)	7, 40, 332, 490, 766
BshFI	GGCC	2 cut(s)	160, 848
BshNI	GGYRCC	1 cut(s)	1004
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	2 cut(s)	32, 664
BslI	CCNNNNNNNGG	2 cut(s)	350, 425
BsmAI	GTCTC	3 cut(s)	92, 517, 1050
BsmBI	CGTCTC	1 cut(s)	1050
BsmFI	GGGAC	2 cut(s)	32, 664
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	160, 848
Bsp13I	TCCGGA	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	410
Bsp143I	GATC	5 cut(s)	14, 241, 415, 547, 616
BspACI	CCGC	4 cut(s)	335, 492, 702, 876
BspANI	GGCC	2 cut(s)	160, 848
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	9
BspHI	TCATGA	3 cut(s)	268, 841, 915
BspLI	GGNNCC	5 cut(s)	47, 48, 403, 645, 1006
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	1004
BsrGI	TGTACA	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	74, 590
BssECI	CCNNGG	2 cut(s)	810, 1008
BssMI	GATC	5 cut(s)	14, 241, 415, 547, 616
BssNI	GRCGYC	3 cut(s)	830, 1005, 1043
BssT1I	CCWWGG	2 cut(s)	810, 1008
Bst2UI	CCWGG	3 cut(s)	406, 426, 641
Bst4CI	ACNGT	4 cut(s)	58, 194, 398, 654
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	3 cut(s)	830, 1005, 1043
BstAUI	TGTACA	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	171, 817, 821
BstDEI	CTNAG	3 cut(s)	108, 303, 897
BstF5I	GGATG	3 cut(s)	6, 65, 103
BstH2I	RGCGCY	1 cut(s)	1008
BstHHI	GCGC	1 cut(s)	1007
BstKTI	GATC	5 cut(s)	17, 244, 418, 550, 619
BstMAI	GTCTC	3 cut(s)	92, 517, 1050
BstMBI	GATC	5 cut(s)	14, 241, 415, 547, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 334, 800, 829
BstNI	CCWGG	3 cut(s)	406, 426, 641
BstNSI	RCATGY	2 cut(s)	173, 823
BstPAI	GACNNNNGTC	1 cut(s)	991
BstSCI	CCNGG	3 cut(s)	404, 424, 639
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	5 cut(s)	7, 40, 332, 490, 766
BstV2I	GAAGAC	2 cut(s)	54, 648
BstX2I	RGATCY	3 cut(s)	241, 415, 616
BstYI	RGATCY	3 cut(s)	241, 415, 616
Bsu36I	CCTNAGG	1 cut(s)	897
BsuRI	GGCC	2 cut(s)	160, 848
BtsCI	GGATG	3 cut(s)	6, 65, 103
BtsI	GCAGTG	2 cut(s)	419, 804
BtsIMutI	CAGTG	5 cut(s)	63, 199, 403, 419, 804
Cac8I	GCNNGC	3 cut(s)	171, 817, 821
CciI	TCATGA	3 cut(s)	268, 841, 915
CfoI	GCGC	1 cut(s)	1007
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	838
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	7 cut(s)	170, 269, 527, 820, 842, 916, 944
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	108, 303, 897
DinI	GGCGCC	1 cut(s)	1006
DpnI	GATC	5 cut(s)	16, 243, 417, 549, 618
DpnII	GATC	5 cut(s)	14, 241, 415, 547, 616
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	810, 1008
Eco147I	AGGCCT	2 cut(s)	160, 848
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	3 cut(s)	344, 774, 1020
Eco81I	CCTNAGG	1 cut(s)	897
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	404, 424, 639
EcoT14I	CCWWGG	2 cut(s)	810, 1008
EgeI	GGCGCC	1 cut(s)	1006
EheI	GGCGCC	1 cut(s)	1006
ErhI	CCWWGG	2 cut(s)	810, 1008
Esp3I	CGTCTC	1 cut(s)	1050
FaeI	CATG	7 cut(s)	173, 272, 530, 823, 845, 919, 947
FaqI	GGGAC	2 cut(s)	32, 664
FatI	CATG	7 cut(s)	169, 268, 526, 819, 841, 915, 943
FauI	CCCGC	1 cut(s)	709
FauNDI	CATATG	1 cut(s)	39
Fnu4HI	GCNGC	6 cut(s)	21, 29, 321, 493, 504, 780
FokI	GGATG	2 cut(s)	52, 90
Fsp4HI	GCNGC	6 cut(s)	21, 29, 321, 493, 504, 780
FspBI	CTAG	2 cut(s)	759, 978
GlaI	GCGC	1 cut(s)	1006
GluI	GCNGC	6 cut(s)	21, 29, 321, 493, 504, 780
HaeII	RGCGCY	1 cut(s)	1008
HaeIII	GGCC	2 cut(s)	160, 848
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	838
HhaI	GCGC	1 cut(s)	1007
Hin1I	GRCGYC	3 cut(s)	830, 1005, 1043
Hin1II	CATG	7 cut(s)	173, 272, 530, 823, 845, 919, 947
Hin6I	GCGC	1 cut(s)	1005
HinP1I	GCGC	1 cut(s)	1005
HincII	GTYRAC	3 cut(s)	366, 604, 865
HindII	GTYRAC	3 cut(s)	366, 604, 865
HinfI	GANTC	4 cut(s)	119, 371, 992, 1024
HpaI	GTTAAC	1 cut(s)	865
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	255
Hpy166II	GTNNAC	4 cut(s)	366, 411, 604, 865
Hpy188I	TCNGA	1 cut(s)	1000
Hpy188III	TCNNGA	9 cut(s)	10, 228, 269, 351, 460, 620, 842, 916, 1049
Hpy8I	GTNNAC	4 cut(s)	366, 411, 604, 865
HpyAV	CCTTC	5 cut(s)	60, 89, 795, 920, 995
HpyCH4III	ACNGT	4 cut(s)	58, 194, 398, 654
HpyCH4IV	ACGT	2 cut(s)	1043, 1061
HpyCH4V	TGCA	4 cut(s)	23, 169, 320, 961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 334, 800, 829
HpyF3I	CTNAG	3 cut(s)	108, 303, 897
HpySE526I	ACGT	2 cut(s)	1043, 1061
Hsp92I	GRCGYC	3 cut(s)	830, 1005, 1043
Hsp92II	CATG	7 cut(s)	173, 272, 530, 823, 845, 919, 947
HspAI	GCGC	1 cut(s)	1005
KasI	GGCGCC	1 cut(s)	1004
KflI	GGGWCCC	1 cut(s)	46
Kpn2I	TCCGGA	1 cut(s)	9
KspAI	GTTAAC	1 cut(s)	865
Kzo9I	GATC	5 cut(s)	14, 241, 415, 547, 616
LmnI	GCTCC	3 cut(s)	649, 757, 787
Lsp1109I	GCAGC	5 cut(s)	7, 40, 332, 490, 766
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	2 cut(s)	759, 978
MaeII	ACGT	2 cut(s)	1043, 1061
MaeIII	GTNAC	4 cut(s)	176, 206, 610, 953
MalI	GATC	5 cut(s)	16, 243, 417, 549, 618
MboI	GATC	5 cut(s)	14, 241, 415, 547, 616
MboII	GAAGA	8 cut(s)	54, 107, 236, 350, 648, 780, 1027, 1046
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	3 cut(s)	241, 415, 616
MluCI	AATT	5 cut(s)	512, 555, 661, 1019, 1029
Mly113I	GGCGCC	1 cut(s)	1005
MlyI	GAGTC	3 cut(s)	113, 1001, 1018
MmeI	TCCRAC	3 cut(s)	107, 213, 806
MnlI	CCTC	5 cut(s)	196, 276, 354, 838, 850
MroI	TCCGGA	1 cut(s)	9
MroXI	GAANNNNTTC	2 cut(s)	720, 744
MseI	TTAA	4 cut(s)	182, 519, 575, 864
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	3 cut(s)	406, 426, 641
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	3 cut(s)	406, 426, 641
MwoI	GCNNNNNNNGC	4 cut(s)	166, 334, 800, 829
NarI	GGCGCC	1 cut(s)	1005
NdeI	CATATG	1 cut(s)	39
NdeII	GATC	5 cut(s)	14, 241, 415, 547, 616
NlaIII	CATG	7 cut(s)	173, 272, 530, 823, 845, 919, 947
NlaIV	GGNNCC	5 cut(s)	47, 48, 403, 645, 1006
NmuCI	GTSAC	3 cut(s)	176, 206, 953
NspI	RCATGY	2 cut(s)	173, 823
PaeI	GCATGC	2 cut(s)	173, 823
PagI	TCATGA	3 cut(s)	268, 841, 915
PceI	AGGCCT	2 cut(s)	160, 848
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	2 cut(s)	720, 744
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	6 cut(s)	22, 30, 322, 494, 505, 781
PleI	GAGTC	3 cut(s)	113, 1000, 1018
PluTI	GGCGCC	1 cut(s)	1008
PpsI	GAGTC	3 cut(s)	113, 1000, 1018
PpuMI	RGGWCCY	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	991
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	3 cut(s)	404, 424, 639
PspGI	CCWGG	3 cut(s)	404, 424, 639
PspN4I	GGNNCC	5 cut(s)	47, 48, 403, 645, 1006
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	3 cut(s)	241, 415, 616
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	182, 519, 575, 864
SatI	GCNGC	6 cut(s)	21, 29, 321, 493, 504, 780
Sau3AI	GATC	5 cut(s)	14, 241, 415, 547, 616
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	3 cut(s)	113, 1001, 1018
ScrFI	CCNGG	3 cut(s)	406, 426, 641
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	1 cut(s)	318
SfoI	GGCGCC	1 cut(s)	1006
SinI	GGWCC	1 cut(s)	46
SphI	GCATGC	2 cut(s)	173, 823
Sse9I	AATT	5 cut(s)	512, 555, 661, 1019, 1029
SseBI	AGGCCT	2 cut(s)	160, 848
SsiI	CCGC	4 cut(s)	335, 492, 702, 876
SspDI	GGCGCC	1 cut(s)	1004
SspMI	CTAG	2 cut(s)	759, 978
StuI	AGGCCT	2 cut(s)	160, 848
StyD4I	CCNGG	3 cut(s)	404, 424, 639
StyI	CCWWGG	2 cut(s)	810, 1008
TaaI	ACNGT	4 cut(s)	58, 194, 398, 654
TaiI	ACGT	2 cut(s)	1046, 1064
TaqI	TCGA	2 cut(s)	311, 459
TasI	AATT	5 cut(s)	512, 555, 661, 1019, 1029
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	4 cut(s)	182, 519, 575, 864
Tru9I	TTAA	4 cut(s)	182, 519, 575, 864
TscAI	CASTG	5 cut(s)	63, 199, 403, 426, 811
TseFI	GTSAC	3 cut(s)	176, 206, 953
TseI	GCWGC	5 cut(s)	20, 28, 320, 503, 779
Tsp45I	GTSAC	3 cut(s)	176, 206, 953
TspRI	CASTG	5 cut(s)	63, 199, 403, 426, 811
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	2 cut(s)	512, 661
XceI	RCATGY	2 cut(s)	173, 823
XmnI	GAANNNNTTC	2 cut(s)	720, 744
XspI	CTAG	2 cut(s)	759, 978
ZraI	GACGTC	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.