Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008206

Physical Location & Seq

Genomic Coordinates Forward (+)

23854279 .. 23856582

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGGCTTCTTCTCTGCTCAGATCTTCTGTCTCAGCTCCGTTGGTCGAAGCCTCCCGCGCCGACCTCGCCGCCTCCCACCTCCCAACTGTTTCAAAACACGTGTCGAGCGTTGGGTTTAGTCGCAATCTGAACTGTCCCAAGGTGCAATCATCCATATTTGGCACTTCCATCCCAAGCGGCTCATATTCTTTACAGATATGCAGTGCCAGGAGCGTCCAACCCATCAAGGCCACAGCCACCGAACTGCCACCAACAGCTCAGAGATCCGGAAGTGGTGGGAAGACAAAGATTGGAATCAACGGTTTCGGTAGAATTGGAAGGTTGGTTCTAAGAATTGCAACCACTAGAGATGATATAGAAGTTGTAGCAGTCAATGATCCTCTAGTAGATCCCAAGTACATGGCTTACATGTTTAAGTTTGACTCTACGCATGGAATATTCAATGGATCGATCAGTGTTGTGGATGATTCCACCTTGGAAATAAATGGCAAGGCAATCAAAGTTGTGAGCAAAAGAGATCCTGCTGATCGATCCCTTGGGGTGATTATGGGGTTGAATATGTTGTCGAATCTTCTGGGATTTTTACAACACTTGAGAAGGCTGCATTTCATAAAAAGGGTGGTGCAAAGAAAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

214

Amino Acids

22.96

Weight (kDa)

10.28

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	97 - 177	9.2e-28	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16300 AT1G79530
fragaria_vesca	FvH4_3g14640
malus_domestica	MD05G1234400.v1.1 MD10G1210900.v1.1
prunus_persica	Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1
pyrus_communis	pycom05g21170 pycom10g17920 pycom10g17930
rosa_chinensis	RchiOBHm_Chr5g0024101
rosa_laevigata	RLG00000032770
rosa_multiflora	Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055140 Rroxscaffold_1G00055670
rosa_rugosa	Rorug05G0081300
rosa_samantha	Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000
rosa_wichuraiana	Rw0G003230 Rw5G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	4 cut(s)	5, 58, 72, 180
AclWI	GGATC	6 cut(s)	261, 374, 386, 457, 515, 528
AcvI	CACGTG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	401
AflIII	ACRYGT	3 cut(s)	100, 102, 411
AgsI	TTSAA	3 cut(s)	96, 445, 559
AjnI	CCWGG	1 cut(s)	209
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	2 cut(s)	38, 260
AluI	AGCT	2 cut(s)	38, 260
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	6 cut(s)	261, 374, 386, 457, 515, 528
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	604
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspLEI	GCGC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	556
BbrPI	CACGTG	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	591
BccI	CCATC	2 cut(s)	179, 233
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	348, 386
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	4 cut(s)	6, 72, 181, 605
BlsI	GCNGC	4 cut(s)	7, 73, 182, 606
Bme1390I	CCNGG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	616
Bsa29I	ATCGAT	2 cut(s)	452, 532
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	141, 477, 538
BsaWI	WCCGGW	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	296
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	211
BseCI	ATCGAT	2 cut(s)	452, 532
BseDI	CCNNGG	3 cut(s)	141, 477, 538
BseGI	GGATG	3 cut(s)	152, 171, 472
BseJI	GATNNNNATC	1 cut(s)	296
BseMII	CTCAG	3 cut(s)	34, 48, 275
BseXI	GCAGC	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	233
BshVI	ATCGAT	2 cut(s)	452, 532
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	9 cut(s)	23, 266, 379, 391, 449, 453, 520, 529, 533
BspACI	CCGC	4 cut(s)	5, 58, 72, 180
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	3 cut(s)	33, 47, 274
BspDI	ATCGAT	2 cut(s)	452, 532
BspEI	TCCGGA	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	60
BspPI	GGATC	6 cut(s)	261, 374, 386, 457, 515, 528
BssECI	CCNNGG	3 cut(s)	141, 477, 538
BssMI	GATC	9 cut(s)	23, 266, 379, 391, 449, 453, 520, 529, 533
BssT1I	CCWWGG	3 cut(s)	141, 477, 538
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	91, 137, 305
BstBAI	YACGTR	1 cut(s)	103
BstDEI	CTNAG	4 cut(s)	20, 34, 261, 332
BstF5I	GGATG	3 cut(s)	152, 171, 472
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	9 cut(s)	26, 269, 382, 394, 452, 456, 523, 532, 536
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	9 cut(s)	23, 266, 379, 391, 449, 453, 520, 529, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	591
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	4 cut(s)	23, 266, 391, 520
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	4 cut(s)	23, 266, 391, 520
Bsu15I	ATCGAT	2 cut(s)	452, 532
BsuRI	GGCC	1 cut(s)	233
BsuTUI	ATCGAT	2 cut(s)	452, 532
BtsCI	GGATG	3 cut(s)	152, 171, 472
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	211, 463
CfoI	GCGC	1 cut(s)	62
ClaI	ATCGAT	2 cut(s)	452, 532
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	400
CspCI	CAANNNNNGTGG	1 cut(s)	617
CviAII	CATG	3 cut(s)	403, 412, 434
CviJI	RGCY	9 cut(s)	8, 38, 53, 183, 233, 239, 260, 407, 604
CviKI_1	RGCY	9 cut(s)	8, 38, 53, 183, 233, 239, 260, 407, 604
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	4 cut(s)	20, 34, 261, 332
DpnI	GATC	9 cut(s)	25, 268, 381, 393, 451, 455, 522, 531, 535
DpnII	GATC	9 cut(s)	23, 266, 379, 391, 449, 453, 520, 529, 533
Eco130I	CCWWGG	3 cut(s)	141, 477, 538
Eco72I	CACGTG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	3 cut(s)	141, 477, 538
ErhI	CCWWGG	3 cut(s)	141, 477, 538
FaeI	CATG	3 cut(s)	406, 415, 437
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	3 cut(s)	402, 411, 433
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	4 cut(s)	6, 72, 181, 605
FokI	GGATG	3 cut(s)	139, 158, 479
Fsp4HI	GCNGC	4 cut(s)	6, 72, 181, 605
FspBI	CTAG	2 cut(s)	348, 386
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	4 cut(s)	6, 72, 181, 605
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	406, 415, 437
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	4 cut(s)	297, 425, 470, 571
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	556
Hpy188I	TCNGA	3 cut(s)	23, 132, 264
Hpy188III	TCNNGA	1 cut(s)	270
HpyAV	CCTTC	2 cut(s)	315, 594
HpyCH4III	ACNGT	3 cut(s)	91, 137, 305
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	148, 204, 341, 607, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	4 cut(s)	20, 34, 261, 332
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	406, 415, 437
HspAI	GCGC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	9 cut(s)	23, 266, 379, 391, 449, 453, 520, 529, 533
LmnI	GCTCC	2 cut(s)	43, 213
LpnPI	CCDG	5 cut(s)	196, 223, 283, 537, 563
Lsp1109I	GCAGC	1 cut(s)	591
MaeI	CTAG	2 cut(s)	348, 386
MaeII	ACGT	1 cut(s)	102
MalI	GATC	9 cut(s)	25, 268, 381, 393, 451, 455, 522, 531, 535
MboI	GATC	9 cut(s)	23, 266, 379, 391, 449, 453, 520, 529, 533
MboII	GAAGA	4 cut(s)	3, 18, 295, 566
MflI	RGATCY	4 cut(s)	23, 266, 391, 520
MluCI	AATT	2 cut(s)	315, 336
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	5 cut(s)	64, 77, 85, 92, 393
MroI	TCCGGA	1 cut(s)	269
MseI	TTAA	1 cut(s)	417
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NdeII	GATC	9 cut(s)	23, 266, 379, 391, 449, 453, 520, 529, 533
NlaIII	CATG	3 cut(s)	406, 415, 437
NspI	RCATGY	1 cut(s)	415
PciI	ACATGT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	297, 470, 571
PkrI	GCNGC	4 cut(s)	7, 73, 182, 606
PleI	GAGTC	1 cut(s)	419
PmaCI	CACGTG	1 cut(s)	103
PmlI	CACGTG	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	103
PscI	ACATGT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	209
PsuI	RGATCY	4 cut(s)	23, 266, 391, 520
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	4 cut(s)	6, 72, 181, 605
Sau3AI	GATC	9 cut(s)	23, 266, 379, 391, 449, 453, 520, 529, 533
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	8 cut(s)	40, 69, 84, 105, 147, 262, 326, 479
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
Sse9I	AATT	2 cut(s)	315, 336
SsiI	CCGC	4 cut(s)	5, 58, 72, 180
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	2 cut(s)	348, 386
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	3 cut(s)	141, 477, 538
TaaI	ACNGT	3 cut(s)	91, 137, 305
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	5 cut(s)	48, 107, 452, 532, 569
TasI	AATT	2 cut(s)	315, 336
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	3 cut(s)	8, 74, 183
TfiI	GAWTC	3 cut(s)	297, 470, 571
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	2 cut(s)	211, 463
TseI	GCWGC	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	601
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	211, 463
XceI	RCATGY	1 cut(s)	415
XspI	CTAG	2 cut(s)	348, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.