Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002994

Physical Location & Seq

Genomic Coordinates Forward (+)

26172835 .. 26174029

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAACCCAACTTGGTAGCTCCTGGAAATTCTATATGGGCTGCTTGGAGTTCTGTTGGGCAAGACTCGATTGAATTTCAAGGCGAGAACTTCGCAATTATGTCTGGGACAAGCATGGCTGCTCCTCATATTGCTGGGCTTGCTGCACTAGTTAGGCAGAAGTTCCCCAATTTCAGTCCTTCAGCCATTGCATCTGCACTTTCCACAACAGCTTCCCTATATGACAAGAATGGTGGGGCCATAATGGCTCAGCGTGCTTATGCATTTCCAGATCAAAATCAGTCTCCAGCAACGCCCTTTGATATGGGCAGTGGTTTTGTGAATGCCACTGCAGCGCTGAATCCAGGATTGATTTTTGATGCCAGTTACGACAGTTATATGTCATTTCTTTGTGGCATTAATGGATCGAACAGCGCTCCTGTGGTCTTGAATTACACCGGTGAGAGCTGTTGGGCTTATAATTCTACCATCAGTGGAGGTGACCTGAACTTGCCATCAATAACAATAGCAAAACTAAACCAGTCTAGGACGGTGCTGAGAACAGTGAGGAACATTGCTGAAAATGAAACTTATACCGTTGGCTGGAGTGCTCCTTTCGGAGTTTCATTAAGGGTGTCACCACTTAATTTTTCGATTGCCAGTGGGGAGACACAGATCTTAAGTGTATTCGTTAATGCTACGGGTAACAGCACGACTGCTAGCTATGGGAGTGTCGGACTACTTGGAAATCTAGGCCATGTTATCAACATTCCTTTGTCAGTCATTATCAAATTCACATATAATACCACTGCCAACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

267

Amino Acids

27.83

Weight (kDa)

5.59

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	1 - 84	1.9e-16	Subtilase family
fn3_6	PF17766	161 - 254	2.6e-14	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30600 AT4G20430 AT4G20430 AT4G20430 AT5G44530 AT5G44530 AT5G44530
fragaria_vesca	FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550
malus_domestica	MD00G1096900.v1.1 MD10G1240800.v1.1
prunus_persica	Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1
pyrus_communis	pycom05g24650 pycom05g24660 pycom10g20150
rosa_chinensis	RchiOBHm_Chr5g0018491
rosa_laevigata	RLG00000032371
rosa_multiflora	Rmu_sc0002579.1_g000001 Rmu_sc0004464.1_g000018 Rmu_sc0038967.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059240
rosa_rugosa	Rorug05G0044600 Rorug05G0044700
rosa_samantha	Rh5AG135800 Rh5BG134700 Rh5CG146800 Rh5DG135900
rosa_wichuraiana	Rw5G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AclWI	GGATC	1 cut(s)	412
AcsI	RAATTY	3 cut(s)	28, 74, 770
AcuI	CTGAAG	1 cut(s)	165
AfeI	AGCGCT	2 cut(s)	336, 415
AfiI	CCNNNNNNNGG	1 cut(s)	582
AflII	CTTAAG	1 cut(s)	658
AgeI	ACCGGT	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	74, 80, 430
AhlI	ACTAGT	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	22, 343
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	20, 212, 447, 702
AluI	AGCT	4 cut(s)	20, 212, 447, 702
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	2 cut(s)	288, 641
AlwI	GGATC	1 cut(s)	412
Aor51HI	AGCGCT	2 cut(s)	336, 415
AoxI	GGCC	2 cut(s)	237, 733
ApeKI	GCWGC	4 cut(s)	41, 119, 143, 332
ApoI	RAATTY	3 cut(s)	28, 74, 770
AseI	ATTAAT	1 cut(s)	399
AsiGI	ACCGGT	1 cut(s)	437
AspLEI	GCGC	2 cut(s)	337, 416
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	3 cut(s)	452, 491, 609
AsuNHI	GCTAGC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	4 cut(s)	28, 106, 130, 344
BccI	CCATC	2 cut(s)	476, 502
BciT130I	CCWGG	2 cut(s)	24, 345
BcoDI	GTCTC	2 cut(s)	288, 641
BcuI	ACTAGT	1 cut(s)	148
BfaI	CTAG	4 cut(s)	149, 525, 699, 731
BfmI	CTRYAG	1 cut(s)	330
BfoI	RGCGCY	2 cut(s)	338, 417
BfrI	CTTAAG	1 cut(s)	658
BglI	GCCNNNNNGGC	1 cut(s)	245
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	4 cut(s)	42, 120, 144, 333
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	4 cut(s)	43, 121, 145, 334
Bme1390I	CCNGG	2 cut(s)	24, 345
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	24, 345
BmsI	GCATC	2 cut(s)	200, 349
BmtI	GCTAGC	1 cut(s)	702
BpmI	CTGGAG	2 cut(s)	270, 604
Bpu1102I	GCTNAGC	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	3 cut(s)	363, 520, 639
Bse3DI	GCAATG	2 cut(s)	186, 552
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	24, 345
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMI	GCAATG	2 cut(s)	186, 552
BseMII	CTCAG	2 cut(s)	263, 527
BseNI	ACTGG	3 cut(s)	363, 520, 639
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	4 cut(s)	28, 106, 130, 344
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	2 cut(s)	129, 180
BshFI	GGCC	2 cut(s)	239, 735
BshTI	ACCGGT	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	582
BsmAI	GTCTC	2 cut(s)	288, 641
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	239, 735
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	3 cut(s)	271, 404, 654
Bsp1720I	GCTNAGC	1 cut(s)	249
BspANI	GGCC	2 cut(s)	239, 735
BspCNI	CTCAG	2 cut(s)	262, 528
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	1 cut(s)	412
BspTI	CTTAAG	1 cut(s)	658
BsrDI	GCAATG	2 cut(s)	186, 552
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	363, 520, 639
BssAI	RCCGGY	1 cut(s)	437
BssMI	GATC	3 cut(s)	271, 404, 654
Bst2UI	CCWGG	2 cut(s)	24, 345
Bst4CI	ACNGT	5 cut(s)	374, 532, 544, 577, 797
BstAFI	CTTAAG	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	141, 255, 700
BstDEI	CTNAG	2 cut(s)	249, 536
BstEII	GGTNACC	1 cut(s)	479
BstH2I	RGCGCY	2 cut(s)	338, 417
BstHHI	GCGC	2 cut(s)	337, 416
BstKTI	GATC	3 cut(s)	274, 407, 657
BstMAI	GTCTC	2 cut(s)	288, 641
BstMBI	GATC	3 cut(s)	271, 404, 654
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 245, 254, 332
BstNI	CCWGG	2 cut(s)	24, 345
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	22, 343
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	28, 106, 130, 344
BstX2I	RGATCY	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	239, 735
BtsI	GCAGTG	3 cut(s)	316, 327, 786
BtsIMutI	CAGTG	6 cut(s)	316, 327, 478, 549, 646, 786
Cac8I	GCNNGC	3 cut(s)	141, 255, 700
CfoI	GCGC	2 cut(s)	337, 416
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	237
CspAI	ACCGGT	1 cut(s)	437
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	2 cut(s)	115, 737
DdeI	CTNAG	2 cut(s)	249, 536
DpnI	GATC	3 cut(s)	273, 406, 656
DpnII	GATC	3 cut(s)	271, 404, 654
Eco47III	AGCGCT	2 cut(s)	336, 415
Eco57I	CTGAAG	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	22, 343
EcoT22I	ATGCAT	1 cut(s)	265
FaeI	CATG	2 cut(s)	118, 740
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	2 cut(s)	114, 736
Fnu4HI	GCNGC	4 cut(s)	42, 120, 144, 333
Fsp4HI	GCNGC	4 cut(s)	42, 120, 144, 333
FspBI	CTAG	4 cut(s)	149, 525, 699, 731
GlaI	GCGC	2 cut(s)	336, 415
GluI	GCNGC	4 cut(s)	42, 120, 144, 333
GsaI	CCCAGC	1 cut(s)	138
GsuI	CTGGAG	2 cut(s)	270, 604
HaeII	RGCGCY	2 cut(s)	338, 417
HaeIII	GGCC	2 cut(s)	239, 735
HapII	CCGG	1 cut(s)	438
HhaI	GCGC	2 cut(s)	337, 416
Hin1II	CATG	2 cut(s)	118, 740
Hin6I	GCGC	2 cut(s)	335, 414
HinP1I	GCGC	2 cut(s)	335, 414
HinfI	GANTC	2 cut(s)	65, 340
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	3 cut(s)	452, 491, 609
Hpy188I	TCNGA	2 cut(s)	599, 716
Hpy188III	TCNNGA	2 cut(s)	269, 427
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	5 cut(s)	374, 532, 544, 577, 797
HpyCH4V	TGCA	5 cut(s)	146, 191, 197, 263, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 245, 254, 332
HpyF3I	CTNAG	2 cut(s)	249, 536
Hsp92II	CATG	2 cut(s)	118, 740
HspAI	GCGC	2 cut(s)	335, 414
Kzo9I	GATC	3 cut(s)	271, 404, 654
LmnI	GCTCC	4 cut(s)	25, 127, 421, 595
Lsp1109I	GCAGC	4 cut(s)	28, 106, 130, 344
LweI	GCATC	2 cut(s)	200, 349
MaeI	CTAG	4 cut(s)	149, 525, 699, 731
MaeIII	GTNAC	4 cut(s)	365, 479, 615, 683
MalI	GATC	3 cut(s)	273, 406, 656
MboI	GATC	3 cut(s)	271, 404, 654
MflI	RGATCY	1 cut(s)	654
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	8 cut(s)	28, 74, 96, 169, 430, 460, 625, 770
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	3 cut(s)	135, 470, 540
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	6 cut(s)	399, 608, 624, 659, 672, 799
MspCI	CTTAAG	1 cut(s)	658
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	24, 345
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	24, 345
MwoI	GCNNNNNNNGC	4 cut(s)	140, 245, 254, 332
NdeII	GATC	3 cut(s)	271, 404, 654
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	2 cut(s)	118, 740
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	479, 615
NsiI	ATGCAT	1 cut(s)	265
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	340
PfoI	TCCNGGA	2 cut(s)	22, 343
PinAI	ACCGGT	1 cut(s)	437
PkrI	GCNGC	4 cut(s)	43, 121, 145, 334
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	22, 343
PspEI	GGTNACC	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	22, 343
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	654
SaqAI	TTAA	6 cut(s)	399, 608, 624, 659, 672, 799
SatI	GCNGC	4 cut(s)	42, 120, 144, 333
Sau3AI	GATC	3 cut(s)	271, 404, 654
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	24, 345
SduI	GDGCHC	1 cut(s)	592
SetI	ASST	6 cut(s)	22, 214, 449, 481, 486, 704
SfaNI	GCATC	2 cut(s)	200, 349
SfcI	CTRYAG	1 cut(s)	330
SgrAI	CRCCGGYG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
SpeI	ACTAGT	1 cut(s)	148
Sse9I	AATT	8 cut(s)	28, 74, 96, 169, 430, 460, 625, 770
SspMI	CTAG	4 cut(s)	149, 525, 699, 731
StyD4I	CCNGG	2 cut(s)	22, 343
TaaI	ACNGT	5 cut(s)	374, 532, 544, 577, 797
TaqI	TCGA	3 cut(s)	68, 407, 632
TasI	AATT	8 cut(s)	28, 74, 96, 169, 430, 460, 625, 770
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	6 cut(s)	399, 608, 624, 659, 672, 799
Tru9I	TTAA	6 cut(s)	399, 608, 624, 659, 672, 799
TscAI	CASTG	6 cut(s)	316, 334, 478, 549, 646, 793
TseFI	GTSAC	2 cut(s)	479, 615
TseI	GCWGC	4 cut(s)	41, 119, 143, 332
Tsp45I	GTSAC	2 cut(s)	479, 615
TspDTI	ATGAA	3 cut(s)	17, 579, 594
TspRI	CASTG	6 cut(s)	316, 334, 478, 549, 646, 793
Vha464I	CTTAAG	1 cut(s)	658
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	3 cut(s)	28, 74, 770
XspI	CTAG	4 cut(s)	149, 525, 699, 731
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.