Rorug05G0044700

Belongs to the peptidase S8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002994
Physical Location & Seq
Reverse (-)
3931505 .. 3931750
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0044700.1

Sequence Viewer

Length: 246 bp
ATGGCCGAGGCACTCATTGCCGTGCTTCTGGAACAATTGGTTACAGTTTCTTTCGACCACACGAAAGAAGCTGTGAAGCTGATTTTGAATGCTGAGACAGAGGTCCAAAATTTCAGCAGCAATCTAAAAGCAATTCAAGCTGTGCTCGAGGATGCTGAGAAGCAGCAAGTGGAGAATGCTAGCGTGAGACACTGGTTGGATGGGCTGAATGATGTCTCTTACGAGATGGCATGGTTGACGTGCTAG

Protein Analysis

81

Amino Acids

9.07

Weight (kDa)

4.41

Isoelectric Point (pI)

28.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 76 1.6e-14 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 109
AgsI TTSAA 2 cut(s) 88, 137
AjiI CACGTC 1 cut(s) 240
AluBI AGCT 3 cut(s) 71, 79, 140
AluI AGCT 3 cut(s) 71, 79, 140
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 3 cut(s) 89, 181, 220
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 117, 163
ApoI RAATTY 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 103
AsuNHI GCTAGC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 129, 175
BccI CCATC 2 cut(s) 194, 220
BceAI ACGGC 1 cut(s) 5
BcoDI GTCTC 3 cut(s) 89, 181, 220
BfaI CTAG 2 cut(s) 180, 244
BisI GCNGC 2 cut(s) 118, 164
BlsI GCNGC 2 cut(s) 119, 165
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 142
BmtI GCTAGC 1 cut(s) 183
BoxI GACNNNNGTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 157, 205
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 84, 147
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 129, 175
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 146
BsmAI GTCTC 3 cut(s) 89, 181, 220
BsmI GAATGC 2 cut(s) 94, 181
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 147
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 85, 148
BspOI GCTAGC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 93, 156
BstF5I GGATG 2 cut(s) 157, 205
BstMAI GTCTC 3 cut(s) 89, 181, 220
BstMWI GCNNNNNNNGC 2 cut(s) 17, 137
BstPAI GACNNNNGTC 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 129, 175
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 157, 205
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 103
CviAII CATG 1 cut(s) 231
CviJI RGCY 5 cut(s) 5, 71, 79, 140, 205
CviKI_1 RGCY 5 cut(s) 5, 71, 79, 140, 205
DdeI CTNAG 2 cut(s) 93, 156
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 146
FaeI CATG 1 cut(s) 234
FaiI YATR 1 cut(s) 232
FatI CATG 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 118, 164
FokI GGATG 2 cut(s) 164, 212
Fsp4HI GCNGC 2 cut(s) 118, 164
FspBI CTAG 2 cut(s) 180, 244
GluI GCNGC 2 cut(s) 118, 164
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 234
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 137
HpyF3I CTNAG 2 cut(s) 93, 156
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 1 cut(s) 234
LpnPI CCDG 2 cut(s) 14, 178
Lsp1109I GCAGC 2 cut(s) 129, 175
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 180, 244
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 40
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 3 cut(s) 35, 109, 132
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 2 cut(s) 94, 142
MslI CAYNNNNRTG 1 cut(s) 20
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 2 cut(s) 94, 181
MwoI GCNNNNNNNGC 2 cut(s) 17, 137
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 1 cut(s) 234
NmeAIII GCCGAG 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 146
PctI GAATGC 2 cut(s) 94, 181
PkrI GCNGC 2 cut(s) 119, 165
PshAI GACNNNNGTC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 103
PspXI VCTCGAGB 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 2 cut(s) 118, 164
Sau96I GGNCC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 147
SetI ASST 5 cut(s) 73, 81, 105, 142, 242
SfaNI GCATC 1 cut(s) 142
Sfr274I CTCGAG 1 cut(s) 146
SinI GGWCC 1 cut(s) 103
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 3 cut(s) 35, 109, 132
SspMI CTAG 2 cut(s) 180, 244
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 54, 147
TasI AATT 3 cut(s) 35, 109, 132
TscAI CASTG 1 cut(s) 197
TseI GCWGC 2 cut(s) 117, 163
TspRI CASTG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 146
XspI CTAG 2 cut(s) 180, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.