Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002994

Physical Location & Seq

Genomic Coordinates Reverse (-)

3930098 .. 3931349

Gene Structure 1252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAAGGGTTGAATGAAAAGCTAAATCTGATTACTGCTCAGAAAGAAAAGTTTGAGTTTCATCAATCCTCAACTCGTAGGAATGATGAACAACTTAAGCAACCGCTGGAAACTTCATCATTTGTCGATATTTCTACAATATTTGGCAGAGAAGAAGCAACAGCTGATTTGTTAAACAAGTTAATATTGAGTGATAGTAGTGAAGAAGGGAAAAGGGTCCTTGTCATACCTATTGTGGGTATGGGAGGGATGGGGAAAACAACTCTTGCCCAATTAGCCTACAATAATGAAAAAGTAAAAACCTATTTTGAAAAGAGAATATGGGTTTGTGTCTCAGATCCTTTTGATGGGGTGAAGATTGCCAAAGCCATCATTAAGGGTACTGGTAATGACGACCCAAATTCAACCGTGTTGGAAGAGGTCTTGCAGTGTATGTATAGATCTCTTGAGGGGAAGAAGTACTTGATTGTTTTAGATGATGTGTGGACCGAAGATCTAGGAAAGTGGGAAAGTTTAAAGTTACTGATAATAATGCAAACTTGTGCTAAAGCATTGCATATTTGGGGAGGGAAGAAGATATATAAGGCTAATAGACTTGGAGTTATAGGTGAGAAAATAGCAAAAAAGTGTAACGGCTTGCCACTTGCTGCAAGAACTCTAGGTGCTCTCATGCGGAATAAGAAGGAAAGGGGAGATTGGCAAGAGGTCTTGGATAGTAAGACATGGCTTCTACAAGAGGTTGAGCAACAAGTTTTTCAACCACTTTTACCAAGTTATTATGAGTTGGCCCCTGTAGTTAAGCGTTGCCTTTTATACTGTGCTATATTTCCAAAAGATTATCGTTTCGAGAAAGACAATTTGATTGAGTTGTGGATGTCACATGATTATCTTAGTGGGAAAGAAAAGGAAAAAACAGGTCAAAATGTCTTCGATACCTTATTAATGCGATCATTTTTTCAGGATGTTGTGAAAGAAGAACGTAGTTATGACCTCAACTTTACTATATTTAGCAAAATGCATGATATTGTACATGACTTTGTGCAATTCCTCAATAAGAATGAATGTTTTACAATGGAGACTAAAGAAGTAGAAGGAAGAAAAACGGTAATAAGCGAGAAGGAAGAAAAACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

377

Amino Acids

43.53

Weight (kDa)

7.53

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	57 - 174	2.4e-22	NB-ARC domain
WHD_DRP	PF23559	275 - 347	3.6e-19	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30600 AT4G20430 AT4G20430 AT4G20430 AT5G44530 AT5G44530 AT5G44530
fragaria_vesca	FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550
malus_domestica	MD00G1096900.v1.1 MD10G1240800.v1.1
prunus_persica	Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1
pyrus_communis	pycom05g24650 pycom05g24660 pycom10g20150
rosa_chinensis	RchiOBHm_Chr5g0018491
rosa_laevigata	RLG00000032371
rosa_multiflora	Rmu_sc0002579.1_g000001 Rmu_sc0004464.1_g000018 Rmu_sc0038967.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059240
rosa_rugosa	Rorug05G0044600 Rorug05G0044700
rosa_samantha	Rh5AG135800 Rh5BG134700 Rh5CG146800 Rh5DG135900
rosa_wichuraiana	Rw5G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 673
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	400
AfaI	GTAC	3 cut(s)	382, 461, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	236, 347
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	4 cut(s)	13, 311, 405, 758
AluBI	AGCT	2 cut(s)	22, 164
AluI	AGCT	2 cut(s)	22, 164
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	2 cut(s)	337, 1070
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	1 cut(s)	400
AseI	ATTAAT	1 cut(s)	941
AspS9I	GGNCC	3 cut(s)	217, 486, 787
AsuHPI	GGTGA	2 cut(s)	364, 620
AvaII	GGWCC	2 cut(s)	217, 486
BbsI	GAAGAC	1 cut(s)	919
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	3 cut(s)	244, 341, 377
BceAI	ACGGC	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	337, 1070
BfaI	CTAG	2 cut(s)	497, 659
BfmI	CTRYAG	1 cut(s)	792
BfrI	CTTAAG	1 cut(s)	95
BglII	AGATCT	2 cut(s)	440, 493
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
BmcAI	AGTACT	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	217, 486
BmgT120I	GGNCC	3 cut(s)	217, 486, 787
BmiI	GGNNCC	2 cut(s)	218, 789
BpiI	GAAGAC	1 cut(s)	919
BpuEI	CTTGAG	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 347
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	551
BseGI	GGATG	3 cut(s)	255, 879, 967
BseLI	CCNNNNNNNGG	2 cut(s)	236, 347
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	53, 348
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	634
BshFI	GGCC	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	236, 347
BsmAI	GTCTC	2 cut(s)	337, 1070
BsnI	GGCC	1 cut(s)	788
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp1407I	TGTACA	1 cut(s)	1027
Bsp143I	GATC	4 cut(s)	337, 440, 493, 947
BspACI	CCGC	2 cut(s)	104, 673
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	2 cut(s)	52, 347
BspLI	GGNNCC	2 cut(s)	218, 789
BspPI	GGATC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	551
BsrGI	TGTACA	1 cut(s)	1027
BsrI	ACTGG	1 cut(s)	388
BssMI	GATC	4 cut(s)	337, 440, 493, 947
Bst4CI	ACNGT	4 cut(s)	409, 818, 1105, 1131
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	1027
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	3 cut(s)	39, 334, 890
BstF5I	GGATG	3 cut(s)	255, 879, 967
BstKTI	GATC	4 cut(s)	340, 443, 496, 950
BstMAI	GTCTC	2 cut(s)	337, 1070
BstMBI	GATC	4 cut(s)	337, 440, 493, 947
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	792
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	1 cut(s)	919
BstX2I	RGATCY	3 cut(s)	337, 440, 493
BstYI	RGATCY	3 cut(s)	337, 440, 493
BsuRI	GGCC	1 cut(s)	788
BtsCI	GGATG	3 cut(s)	255, 879, 967
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	217, 486, 787
Csp6I	GTAC	3 cut(s)	381, 460, 1028
CviAII	CATG	5 cut(s)	670, 723, 881, 1019, 1031
CviJI	RGCY	8 cut(s)	22, 164, 278, 368, 587, 636, 727, 788
CviKI_1	RGCY	8 cut(s)	22, 164, 278, 368, 587, 636, 727, 788
CviQI	GTAC	3 cut(s)	381, 460, 1028
DdeI	CTNAG	3 cut(s)	39, 334, 890
DpnI	GATC	4 cut(s)	339, 442, 495, 949
DpnII	GATC	4 cut(s)	337, 440, 493, 947
DraI	TTTAAA	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	217, 486
EcoO109I	RGGNCCY	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	1020
FaeI	CATG	5 cut(s)	673, 726, 884, 1022, 1034
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	5 cut(s)	669, 722, 880, 1018, 1030
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	3 cut(s)	262, 886, 974
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	2 cut(s)	497, 659
GluI	GCNGC	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	788
Hin1II	CATG	5 cut(s)	673, 726, 884, 1022, 1034
HphI	GGTGA	2 cut(s)	364, 620
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	3 cut(s)	30, 42, 337
Hpy188III	TCNNGA	3 cut(s)	446, 847, 959
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	4 cut(s)	200, 676, 1085, 1111
HpyCH4III	ACNGT	4 cut(s)	409, 818, 1105, 1131
HpyCH4IV	ACGT	1 cut(s)	979
HpyCH4V	TGCA	6 cut(s)	427, 535, 556, 650, 1018, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	39, 334, 890
HpySE526I	ACGT	1 cut(s)	979
Hsp92II	CATG	5 cut(s)	673, 726, 884, 1022, 1034
Kzo9I	GATC	4 cut(s)	337, 440, 493, 947
LpnPI	CCDG	5 cut(s)	92, 369, 804, 900, 944
Lsp1109I	GCAGC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	497, 659
MaeII	ACGT	1 cut(s)	979
MaeIII	GTNAC	3 cut(s)	519, 629, 876
MalI	GATC	4 cut(s)	339, 442, 495, 949
MboI	GATC	4 cut(s)	337, 440, 493, 947
MflI	RGATCY	3 cut(s)	337, 440, 493
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	4 cut(s)	272, 400, 856, 1043
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	9 cut(s)	79, 239, 412, 442, 560, 697, 730, 1001, 1058
Mph1103I	ATGCAT	1 cut(s)	1020
MseI	TTAA	7 cut(s)	96, 173, 182, 375, 515, 798, 941
MspA1I	CMGCKG	2 cut(s)	106, 164
MspCI	CTTAAG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	4 cut(s)	337, 440, 493, 947
NlaIII	CATG	5 cut(s)	673, 726, 884, 1022, 1034
NlaIV	GGNNCC	2 cut(s)	218, 789
NmuCI	GTSAC	1 cut(s)	876
NsiI	ATGCAT	1 cut(s)	1020
PkrI	GCNGC	1 cut(s)	649
PpuMI	RGGWCCY	1 cut(s)	217
PshBI	ATTAAT	1 cut(s)	941
Psp5II	RGGWCCY	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	218, 789
PspPI	GGNCC	3 cut(s)	217, 486, 787
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	337, 440, 493
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	3 cut(s)	382, 461, 1029
RsaNI	GTAC	3 cut(s)	381, 460, 1028
SaqAI	TTAA	7 cut(s)	96, 173, 182, 375, 515, 798, 941
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	4 cut(s)	337, 440, 493, 947
Sau96I	GGNCC	3 cut(s)	217, 486, 787
ScaI	AGTACT	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	792
SinI	GGWCC	2 cut(s)	217, 486
SmlI	CTYRAG	2 cut(s)	95, 446
SmoI	CTYRAG	2 cut(s)	95, 446
Sse9I	AATT	4 cut(s)	272, 400, 856, 1043
SsiI	CCGC	2 cut(s)	104, 673
SspI	AATATT	2 cut(s)	141, 186
SspMI	CTAG	2 cut(s)	497, 659
TaaI	ACNGT	4 cut(s)	409, 818, 1105, 1131
TaiI	ACGT	1 cut(s)	982
TaqI	TCGA	3 cut(s)	126, 846, 930
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	4 cut(s)	272, 400, 856, 1043
TatI	WGTACW	2 cut(s)	459, 1027
Tru1I	TTAA	7 cut(s)	96, 173, 182, 375, 515, 798, 941
Tru9I	TTAA	7 cut(s)	96, 173, 182, 375, 515, 798, 941
TscAI	CASTG	1 cut(s)	434
TseFI	GTSAC	1 cut(s)	876
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	876
TspDTI	ATGAA	7 cut(s)	17, 30, 50, 102, 105, 303, 1074
TspRI	CASTG	1 cut(s)	434
Vha464I	CTTAAG	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	217, 486
VspI	ATTAAT	1 cut(s)	941
XapI	RAATTY	1 cut(s)	400
XspI	CTAG	2 cut(s)	497, 659
ZrmI	AGTACT	1 cut(s)	461
Zsp2I	ATGCAT	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.