Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038967.1

Orthogroup ID

OG0002994

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1035

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atatgggccgcttggagttctatgggcacagactcagttgaatttcaaggtgagagctttgcaatgatgtctgggacaagcatggctgctcctcatgttgctggtcttgctgcactggttaagcagaagtttcccaatttcagtccttcagccgttgcatctgcactttcaacaacggcttctctatatgacaagtctggtgggccaataatggctcagcgtgcttatgcctttccagatcaaaaccagtctccagcaacgccgtttgacatgggcagtggttttgtaaatgctacaggagcactaaatccgggattgatttttgattccagttatgacaattatatgtcatttctttgtggcattaatggatccgctcctgtggttttgaattacactggtcagagctgttggctttataactctaccatcaatgccggagacctgaatttaccatcaataacaatagcaaacctcaaccagtctagaactgttctaagaaccgtgatcaacgttgctcgaaatgagacttatagtatcggctggagtgcgcctttcggagtttcgctaaaagtgtctccatcacatttttacattgctagtggggagacacaggtcttgagtgtattcttcaatgctacgagcaacagcacagctgctagctatggaaggataggactatttggaaatcaaggtcatgttgtcaacattcctttgtctgtcattgtcaaaatcacatataatactaccattaacagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

253

Amino Acids

26.74

Weight (kDa)

6.3

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30600 AT4G20430 AT4G20430 AT4G20430 AT5G44530 AT5G44530 AT5G44530
fragaria_vesca	FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550
malus_domestica	MD00G1096900.v1.1 MD10G1240800.v1.1
prunus_persica	Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1
pyrus_communis	pycom05g24650 pycom05g24660 pycom10g20150
rosa_chinensis	RchiOBHm_Chr5g0018491
rosa_laevigata	RLG00000032371
rosa_multiflora	Rmu_sc0002579.1_g000001 Rmu_sc0004464.1_g000018 Rmu_sc0038967.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059240
rosa_rugosa	Rorug05G0044600 Rorug05G0044700
rosa_samantha	Rh5AG135800 Rh5BG134700 Rh5CG146800 Rh5DG135900
rosa_wichuraiana	Rw5G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	377
AciI	CCGC	2 cut(s)	9, 375
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	2 cut(s)	366, 379
AcsI	RAATTY	2 cut(s)	41, 448
AcuI	CTGAAG	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	41, 47, 171, 391, 634
AluBI	AGCT	5 cut(s)	57, 408, 656, 663, 759
AluI	AGCT	5 cut(s)	57, 408, 656, 663, 759
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	5 cut(s)	255, 435, 521, 582, 602
AlwI	GGATC	2 cut(s)	366, 379
AoxI	GGCC	2 cut(s)	6, 203
ApeKI	GCWGC	3 cut(s)	86, 110, 656
ApoI	RAATTY	2 cut(s)	41, 448
AseI	ATTAAT	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	2 cut(s)	6, 203
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	62
AsuNHI	GCTAGC	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	29
BamHI	GGATCC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	73, 97, 643
BccI	CCATC	3 cut(s)	437, 463, 589
BceAI	ACGGC	3 cut(s)	137, 192, 247
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	5 cut(s)	255, 435, 521, 582, 602
BfaI	CTAG	3 cut(s)	486, 600, 660
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	4 cut(s)	9, 87, 111, 657
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	4 cut(s)	10, 88, 112, 658
Bme1390I	CCNGG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	6, 203
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	167
BmtI	GCTAGC	1 cut(s)	663
BoxI	GACNNNNGTC	1 cut(s)	614
BpmI	CTGGAG	2 cut(s)	237, 565
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	640
BpuMI	CCSGG	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	435
Bse1I	ACTGG	5 cut(s)	120, 247, 330, 403, 481
Bse3DI	GCAATG	2 cut(s)	69, 594
BseMI	GCAATG	2 cut(s)	69, 594
BseMII	CTCAG	2 cut(s)	48, 230
BseNI	ACTGG	5 cut(s)	120, 247, 330, 403, 481
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	73, 97, 643
BsgI	GTGCAG	2 cut(s)	96, 147
BshFI	GGCC	2 cut(s)	8, 205
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	311, 438
BslFI	GGGAC	1 cut(s)	88
BsmAI	GTCTC	5 cut(s)	255, 435, 521, 582, 602
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	8, 205
Bso31I	GGTCTC	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	29, 304
Bsp143I	GATC	3 cut(s)	238, 371, 507
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	9, 375
BspANI	GGCC	2 cut(s)	8, 205
BspCNI	CTCAG	2 cut(s)	47, 229
BspLI	GGNNCC	1 cut(s)	373
BspOI	GCTAGC	1 cut(s)	663
BspPI	GGATC	2 cut(s)	366, 379
BspTNI	GGTCTC	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	377
BsrDI	GCAATG	2 cut(s)	69, 594
BsrI	ACTGG	5 cut(s)	120, 247, 330, 403, 481
BssMI	GATC	3 cut(s)	238, 371, 507
Bst4CI	ACNGT	2 cut(s)	493, 505
BstC8I	GCNNGC	2 cut(s)	222, 661
BstDEI	CTNAG	3 cut(s)	34, 216, 497
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	3 cut(s)	241, 374, 510
BstMAI	GTCTC	5 cut(s)	255, 435, 521, 582, 602
BstMBI	GATC	3 cut(s)	238, 371, 507
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 221, 299
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	73, 97, 643
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	8, 205
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	113, 283, 396
Cac8I	GCNNGC	2 cut(s)	222, 661
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	6, 203
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	4 cut(s)	82, 95, 271, 698
DdeI	CTNAG	3 cut(s)	34, 216, 497
DpnI	GATC	3 cut(s)	240, 373, 509
DpnII	GATC	3 cut(s)	238, 371, 507
Eco31I	GGTCTC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	132
FaeI	CATG	4 cut(s)	85, 98, 274, 701
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	4 cut(s)	81, 94, 270, 697
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	4 cut(s)	9, 87, 111, 657
Fsp4HI	GCNGC	4 cut(s)	9, 87, 111, 657
FspBI	CTAG	3 cut(s)	486, 600, 660
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	4 cut(s)	9, 87, 111, 657
GsuI	CTGGAG	2 cut(s)	237, 565
HaeIII	GGCC	2 cut(s)	8, 205
HapII	CCGG	2 cut(s)	311, 438
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	4 cut(s)	85, 98, 274, 701
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	2 cut(s)	32, 326
HpaII	CCGG	2 cut(s)	311, 438
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	2 cut(s)	405, 560
Hpy188III	TCNNGA	3 cut(s)	236, 486, 619
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	2 cut(s)	156, 663
HpyCH4III	ACNGT	2 cut(s)	493, 505
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	4 cut(s)	62, 113, 158, 164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 221, 299
HpyF3I	CTNAG	3 cut(s)	34, 216, 497
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	4 cut(s)	85, 98, 274, 701
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	238, 371, 507
LmnI	GCTCC	3 cut(s)	94, 299, 382
Lsp1109I	GCAGC	3 cut(s)	73, 97, 643
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	3 cut(s)	486, 600, 660
MaeII	ACGT	1 cut(s)	513
MalI	GATC	3 cut(s)	240, 373, 509
MbiI	CCGCTC	1 cut(s)	377
MboI	GATC	3 cut(s)	238, 371, 507
MboII	GAAGA	1 cut(s)	622
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	29, 304
MluCI	AATT	5 cut(s)	41, 136, 340, 391, 448
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	2 cut(s)	102, 485
MseI	TTAA	3 cut(s)	120, 366, 753
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	2 cut(s)	311, 438
MspR9I	CCNGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	107, 221, 299
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	3 cut(s)	238, 371, 507
NheI	GCTAGC	1 cut(s)	659
NlaIII	CATG	4 cut(s)	85, 98, 274, 701
NlaIV	GGNNCC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	10, 88, 112, 658
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PshAI	GACNNNNGTC	1 cut(s)	614
PshBI	ATTAAT	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	6, 203
PsuI	RGATCY	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	656
SaqAI	TTAA	3 cut(s)	120, 366, 753
SatI	GCNGC	4 cut(s)	9, 87, 111, 657
Sau3AI	GATC	3 cut(s)	238, 371, 507
Sau96I	GGNCC	2 cut(s)	6, 203
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	2 cut(s)	29, 304
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	5 cut(s)	41, 136, 340, 391, 448
SsiI	CCGC	2 cut(s)	9, 375
SspMI	CTAG	3 cut(s)	486, 600, 660
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	493, 505
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	1 cut(s)	520
TasI	AATT	5 cut(s)	41, 136, 340, 391, 448
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	120, 366, 753
Tru9I	TTAA	3 cut(s)	120, 366, 753
TscAI	CASTG	3 cut(s)	120, 283, 403
TseI	GCWGC	3 cut(s)	86, 110, 656
TspRI	CASTG	3 cut(s)	120, 283, 403
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	2 cut(s)	41, 448
XbaI	TCTAGA	1 cut(s)	485
XspI	CTAG	3 cut(s)	486, 600, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.