Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004464.1

Orthogroup ID

OG0002994

Physical Location & Seq

Genomic Coordinates Reverse (-)

66773 .. 67594

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004464.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgtctgggacaagcatggctgctcctcatgttgctggtcttgctgcactggttaagcagaagtttcccaatttcagtccttcagccgttgcatctgcactttcaacaacggcttctctatatgacaagtctggtgggccaataatggctcagcgtgcttatgcctttccagatcaaaaccagtctccagcaacgccgtttgacatgggcagtggttttgtaaatgctacaggagcactaaatccgggattgatttttgattccagttatgacaattatatgtcatttctttgtggcattaatggatccgctcctgtggttttgaattacactggtcagagctgttggctttataactctaccatcaatgccggagacctgaatttaccatcaataacaatagcaaacctcaaccagtctagaactgttctaagaaccgtgatcaacgttgctcgaaatgagacttatagtatcggctggagtgcgcctttcggagtttcgctaaaagtgtctccatcacatttttacattgctagtggggagacacaggtcttgagtgtattcttcaatgctacgagcaacagcacagctgctagctatggaaggataggactatttggaaatcaaggtcatgttgtcaacattcctttgtctgtcattgtcaaaatcacatataatactaccattaacagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

231

Amino Acids

24.32

Weight (kDa)

8.55

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30600 AT4G20430 AT4G20430 AT4G20430 AT5G44530 AT5G44530 AT5G44530
fragaria_vesca	FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550 FvH4_3g11550
malus_domestica	MD00G1096900.v1.1 MD10G1240800.v1.1
prunus_persica	Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1 Prupe.4G102800_v2.0.a1
pyrus_communis	pycom05g24650 pycom05g24660 pycom10g20150
rosa_chinensis	RchiOBHm_Chr5g0018491
rosa_laevigata	RLG00000032371
rosa_multiflora	Rmu_sc0002579.1_g000001 Rmu_sc0004464.1_g000018 Rmu_sc0038967.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059240
rosa_rugosa	Rorug05G0044600 Rorug05G0044700
rosa_samantha	Rh5AG135800 Rh5BG134700 Rh5CG146800 Rh5DG135900
rosa_wichuraiana	Rw5G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccBSI	CCGCTC	1 cut(s)	311
AciI	CCGC	1 cut(s)	309
AclI	AACGTT	1 cut(s)	447
AclWI	GGATC	2 cut(s)	300, 313
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	66
AgsI	TTSAA	3 cut(s)	105, 325, 568
AluBI	AGCT	4 cut(s)	342, 590, 597, 693
AluI	AGCT	4 cut(s)	342, 590, 597, 693
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	5 cut(s)	189, 369, 455, 516, 536
AlwI	GGATC	2 cut(s)	300, 313
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	20, 44, 590
ApoI	RAATTY	1 cut(s)	382
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	246
AsuNHI	GCTAGC	1 cut(s)	593
BamHI	GGATCC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	7, 31, 577
BccI	CCATC	3 cut(s)	371, 397, 523
BceAI	ACGGC	3 cut(s)	71, 126, 181
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	5 cut(s)	189, 369, 455, 516, 536
BfaI	CTAG	3 cut(s)	420, 534, 594
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	21, 45, 591
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	3 cut(s)	22, 46, 592
Bme1390I	CCNGG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	101
BmtI	GCTAGC	1 cut(s)	597
BoxI	GACNNNNGTC	1 cut(s)	548
BpmI	CTGGAG	2 cut(s)	171, 499
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	369
Bse1I	ACTGG	5 cut(s)	54, 181, 264, 337, 415
Bse3DI	GCAATG	1 cut(s)	528
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	5 cut(s)	54, 181, 264, 337, 415
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	3 cut(s)	7, 31, 577
BsgI	GTGCAG	2 cut(s)	30, 81
BshFI	GGCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	245, 372
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	5 cut(s)	189, 369, 455, 516, 536
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	172, 305, 441
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	597
BspPI	GGATC	2 cut(s)	300, 313
BspTNI	GGTCTC	1 cut(s)	369
BsrBI	CCGCTC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	5 cut(s)	54, 181, 264, 337, 415
BssMI	GATC	3 cut(s)	172, 305, 441
Bst4CI	ACNGT	2 cut(s)	427, 439
BstC8I	GCNNGC	2 cut(s)	156, 595
BstDEI	CTNAG	2 cut(s)	150, 431
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	3 cut(s)	175, 308, 444
BstMAI	GTCTC	5 cut(s)	189, 369, 455, 516, 536
BstMBI	GATC	3 cut(s)	172, 305, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 155, 233
BstPAI	GACNNNNGTC	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	3 cut(s)	7, 31, 577
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	3 cut(s)	47, 217, 330
Cac8I	GCNNGC	2 cut(s)	156, 595
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	4 cut(s)	16, 29, 205, 632
DdeI	CTNAG	2 cut(s)	150, 431
DpnI	GATC	3 cut(s)	174, 307, 443
DpnII	GATC	3 cut(s)	172, 305, 441
Eco31I	GGTCTC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	66
FaeI	CATG	4 cut(s)	19, 32, 208, 635
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	15, 28, 204, 631
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	21, 45, 591
Fsp4HI	GCNGC	3 cut(s)	21, 45, 591
FspBI	CTAG	3 cut(s)	420, 534, 594
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	3 cut(s)	21, 45, 591
GsuI	CTGGAG	2 cut(s)	171, 499
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	2 cut(s)	245, 372
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	4 cut(s)	19, 32, 208, 635
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	2 cut(s)	245, 372
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	2 cut(s)	339, 494
Hpy188III	TCNNGA	3 cut(s)	170, 420, 553
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	2 cut(s)	90, 597
HpyCH4III	ACNGT	2 cut(s)	427, 439
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	47, 92, 98
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 155, 233
HpyF3I	CTNAG	2 cut(s)	150, 431
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	4 cut(s)	19, 32, 208, 635
HspAI	GCGC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	172, 305, 441
LmnI	GCTCC	3 cut(s)	28, 233, 316
Lsp1109I	GCAGC	3 cut(s)	7, 31, 577
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	3 cut(s)	420, 534, 594
MaeII	ACGT	1 cut(s)	447
MalI	GATC	3 cut(s)	174, 307, 443
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	3 cut(s)	172, 305, 441
MboII	GAAGA	1 cut(s)	556
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	4 cut(s)	70, 274, 325, 382
MnlI	CCTC	2 cut(s)	36, 419
MseI	TTAA	3 cut(s)	54, 300, 687
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	2 cut(s)	245, 372
MspR9I	CCNGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	41, 155, 233
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	3 cut(s)	172, 305, 441
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	4 cut(s)	19, 32, 208, 635
NlaIV	GGNNCC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	22, 46, 592
PshAI	GACNNNNGTC	1 cut(s)	548
PshBI	ATTAAT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	354
Psp1406I	AACGTT	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	590
SaqAI	TTAA	3 cut(s)	54, 300, 687
SatI	GCNGC	3 cut(s)	21, 45, 591
Sau3AI	GATC	3 cut(s)	172, 305, 441
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	9 cut(s)	344, 381, 411, 450, 552, 592, 599, 631, 695
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
Sse9I	AATT	4 cut(s)	70, 274, 325, 382
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	3 cut(s)	420, 534, 594
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	427, 439
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	1 cut(s)	454
TasI	AATT	4 cut(s)	70, 274, 325, 382
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	54, 300, 687
Tru9I	TTAA	3 cut(s)	54, 300, 687
TscAI	CASTG	3 cut(s)	54, 217, 337
TseI	GCWGC	3 cut(s)	20, 44, 590
TspRI	CASTG	3 cut(s)	54, 217, 337
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	1 cut(s)	382
XbaI	TCTAGA	1 cut(s)	419
XspI	CTAG	3 cut(s)	420, 534, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.