pycom05g26260

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010283
Physical Location & Seq
Forward (+)
27599373 .. 27600585
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGGCGCTTTCCGCTGCGTTCCGGGAACGACTCGAACACATGGAGCATACCCGCAACCAGCGCCTCTCTCTTCTTCAGGCGGAGAAAGAAGCGCAAGAGAACAAGTCTCAGGTGTTGGAGATGAAGCTCGCAAGCATGAGGGCCACGGAGCAGAGGTGCTTAGCGCTCGATCAAAAGATCGCATCGCAAAGCTTCAAAATATGGGCGCTCAGGTCCGAGATCGATCACCTCGACGAGAAATATCGATCCGATTCACATCGATTGAGGGTTTTGAAGAGTGAGGTGGAGGAGCTTGAGGAGTTGGAGAAGGAGAAAAAGAGATTTTATGAGTTGAAGGGATTTGAAATGAAGGAGTTCAAGCAAAATGTGGAGATGTTTGCTTTGGAATGTCAAATGCAAGTTCAAAATTTGAAGAAAGGCATCAATGAGATTCAATCGAACTTTGTTAAATTCCAAGGAAGTGAGAGATGCACAAGTAATGGTGAGATAGCTGCAGCTGAGAAGAGAAAGTGTGAGCTTTTAGCTATGAAGGAGGAGCTGGACAGAAAGTTGGCTTCTAATTGCCAAACAAAAGCTCAATTGCAAAAGCAGTTTCAGGATTTTATCACTAAACACAAACAAGACACAAATTACCAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

214

Amino Acids

25.18

Weight (kDa)

8.2

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 22 - 139 5.1e-22 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 12, 52, 80
AclWI GGATC 1 cut(s) 240
AcsI RAATTY 2 cut(s) 406, 449
AcuI CTGAAG 1 cut(s) 59
AfeI AGCGCT 1 cut(s) 165
AgsI TTSAA 8 cut(s) 196, 274, 334, 344, 358, 404, 412, 434
AluBI AGCT 9 cut(s) 127, 192, 292, 491, 497, 517, 524, 538, 575
AluI AGCT 9 cut(s) 127, 192, 292, 491, 497, 517, 524, 538, 575
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 240
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 14, 491, 494
ApoI RAATTY 2 cut(s) 406, 449
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 5 cut(s) 7, 63, 94, 166, 208
AspS9I GGNCC 2 cut(s) 141, 213
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 218, 494
AvaII GGWCC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 478, 506
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 4 cut(s) 8, 64, 167, 209
BisI GCNGC 3 cut(s) 15, 492, 495
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 3 cut(s) 16, 493, 496
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 141, 213
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 3 cut(s) 191, 429, 458
Bpu10I CCTNAGC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 3 cut(s) 222, 244, 259
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 144, 454
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse8I GATNNNNATC 1 cut(s) 255
BseCI ATCGAT 3 cut(s) 222, 244, 259
BseDI CCNNGG 2 cut(s) 144, 454
BseJI GATNNNNATC 1 cut(s) 255
BseMII CTCAG 3 cut(s) 122, 223, 489
BseRI GAGGAG 3 cut(s) 302, 311, 548
BseXI GCAGC 2 cut(s) 478, 506
BshFI GGCC 1 cut(s) 143
BshVI ATCGAT 3 cut(s) 222, 244, 259
BsiSI CCGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 5 cut(s) 169, 177, 219, 223, 245
Bsp1720I GCTNAGC 1 cut(s) 160
BspACI CCGC 3 cut(s) 12, 52, 80
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 3 cut(s) 121, 222, 490
BspDI ATCGAT 3 cut(s) 222, 244, 259
BspMAI CTGCAG 1 cut(s) 496
BspPI GGATC 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 144, 454
BssMI GATC 5 cut(s) 169, 177, 219, 223, 245
BssT1I CCWWGG 1 cut(s) 454
Bst6I CTCTTC 3 cut(s) 75, 269, 497
BstC8I GCNNGC 2 cut(s) 129, 133
BstDEI CTNAG 4 cut(s) 108, 160, 209, 498
BstDSI CCRYGG 1 cut(s) 144
BstH2I RGCGCY 4 cut(s) 8, 64, 167, 209
BstHHI GCGC 5 cut(s) 7, 63, 94, 166, 208
BstKTI GATC 5 cut(s) 172, 180, 222, 226, 248
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 5 cut(s) 169, 177, 219, 223, 245
BstMWI GCNNNNNNNGC 2 cut(s) 11, 60
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 478, 506
Bsu15I ATCGAT 3 cut(s) 222, 244, 259
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 3 cut(s) 222, 244, 259
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 129, 133
CfoI GCGC 5 cut(s) 7, 63, 94, 166, 208
Cfr13I GGNCC 2 cut(s) 141, 213
ClaI ATCGAT 3 cut(s) 222, 244, 259
CviAII CATG 2 cut(s) 40, 136
DdeI CTNAG 4 cut(s) 108, 160, 209, 498
DpnI GATC 5 cut(s) 171, 179, 221, 225, 247
DpnII GATC 5 cut(s) 169, 177, 219, 223, 245
Eam1104I CTCTTC 3 cut(s) 75, 269, 497
EarI CTCTTC 3 cut(s) 75, 269, 497
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 213
Eco47III AGCGCT 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 43, 139
FaiI YATR 7 cut(s) 41, 48, 137, 202, 327, 527, 640
FatI CATG 2 cut(s) 39, 135
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 15, 492, 495
Fsp4HI GCNGC 3 cut(s) 15, 492, 495
GlaI GCGC 5 cut(s) 6, 62, 93, 165, 207
GluI GCNGC 3 cut(s) 15, 492, 495
HaeII RGCGCY 4 cut(s) 8, 64, 167, 209
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 22
HhaI GCGC 5 cut(s) 7, 63, 94, 166, 208
Hin1II CATG 2 cut(s) 43, 139
Hin6I GCGC 5 cut(s) 5, 61, 92, 164, 206
HinP1I GCGC 5 cut(s) 5, 61, 92, 164, 206
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 3 cut(s) 30, 251, 430
HpaII CCGG 1 cut(s) 22
HphI GGTGA 2 cut(s) 218, 494
Hpy188I TCNGA 2 cut(s) 217, 250
Hpy188III TCNNGA 1 cut(s) 596
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 4 cut(s) 301, 328, 343, 523
HpyCH4V TGCA 4 cut(s) 397, 471, 494, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 60
HpyF3I CTNAG 4 cut(s) 108, 160, 209, 498
Hsp92II CATG 2 cut(s) 43, 139
HspAI GCGC 5 cut(s) 5, 61, 92, 164, 206
Kzo9I GATC 5 cut(s) 169, 177, 219, 223, 245
LmnI GCTCC 4 cut(s) 43, 148, 289, 535
LpnPI CCDG 7 cut(s) 35, 62, 71, 95, 196, 524, 581
Lsp1109I GCAGC 2 cut(s) 478, 506
LweI GCATC 3 cut(s) 191, 429, 458
MalI GATC 5 cut(s) 171, 179, 221, 225, 247
MboI GATC 5 cut(s) 169, 177, 219, 223, 245
MboII GAAGA 5 cut(s) 62, 65, 286, 424, 514
MfeI CAATTG 1 cut(s) 578
MluCI AATT 6 cut(s) 406, 449, 559, 578, 628, 635
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 2 cut(s) 96, 282
MnlI CCTC 9 cut(s) 74, 132, 147, 239, 258, 274, 280, 289, 526
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 1 cut(s) 447
MspA1I CMGCKG 2 cut(s) 14, 497
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 578
MwoI GCNNNNNNNGC 2 cut(s) 11, 60
NciI CCSGG 1 cut(s) 23
NdeII GATC 5 cut(s) 169, 177, 219, 223, 245
NlaIII CATG 2 cut(s) 43, 139
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 251, 430
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 3 cut(s) 16, 493, 496
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspPI GGNCC 2 cut(s) 141, 213
PstI CTGCAG 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 497
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 3 cut(s) 15, 492, 495
Sau3AI GATC 5 cut(s) 169, 177, 219, 223, 245
Sau96I GGNCC 2 cut(s) 141, 213
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 23
SfaNI GCATC 3 cut(s) 191, 429, 458
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 6 cut(s) 406, 449, 559, 578, 628, 635
SsiI CCGC 3 cut(s) 12, 52, 80
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 454
TaqI TCGA 7 cut(s) 33, 168, 222, 231, 244, 259, 437
TasI AATT 6 cut(s) 406, 449, 559, 578, 628, 635
TfiI GAWTC 2 cut(s) 251, 430
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseI GCWGC 3 cut(s) 14, 491, 494
TspDTI ATGAA 3 cut(s) 137, 362, 542
TspGWI ACGGA 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 2 cut(s) 406, 449
XmnI GAANNNNTTC 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.