Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003665

Physical Location & Seq

Genomic Coordinates Reverse (-)

28180317 .. 28181534

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGACATTTACACCCATTGTTTCTTTGCTTGAAGGAGTGCCTGGAATAAAGCACTTGAGTCACGCGATTGAGTTATATTTAGAGTACAAGCCACCAATCGAAGATCTGCAGTATTTCTTGGATTTTCAAATTGCTCAAGTATGGGCCCCGGAGCAAAATAATTTGCAAAGAAAAGAACCTGTGTGTTCATCGCTTCAGTTCAGCTTGATGGGTCCGAAGCTTTACATCAGTCCAGATCAGGTAACAGTAGGCCGTAAGCCTGTCACTGGGCTTAGACTAAATCTAGAAGGCAGCAAACAGAACCGACTGGCTATACATTTGCAACATCTAGTGTCCCTTCCGAAAATTCTTCAACCCCATTGGGATGTGCACATGGCGATAGGTGCACCCAAGTGGCAAGGTCCTGAAGAGCAAGACAGCCGTTGGTTTGAGCCAATCAAGTGGAAGAACTTCTCCCATGTAAGCACTGCACCGATAGAGCACGTGGAAACCTCTATCGGTGACCTCTCTGGTGTTCACATTGTCACTGGCGCTCAGCTTGGTGTATGGGATTTTGGTGCCAAAAATGTATTGCACCTCAAACTCCTCTTCTTTAAAGTACCAGGCTGCACAATTAGGCGGTCTGTTTGGGATCACAACCCAGCCACCCCGTCTTCTGCACTGAAGACGGATGGTTCTTCTTCGTCACATTTAAACAACAGAAGCTCTGACGATAAAAAGGAAAAACTAGCAAAACTAGTGGACTTGACGGAAATGTCGAAGGGGCCGCAAGATATACCAGGTCATTGGTTAGTCACTGGGGCTAAGCTTGGAGTCGACAAGGGAAAGATTGTATTGCGTGTAAAGAACTCGTTGCTGAACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0012501 GO:0019222 GO:0031323 GO:0032350 GO:0033554 GO:0034050 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MACPF

Protein Analysis

289

Amino Acids

32.25

Weight (kDa)

8.91

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29690
fragaria_vesca	FvH4_6g10020 FvH4_6g10020 FvH4_6g10020 FvH4_7g07810 FvH4_7g07810 FvH4_7g07810
malus_domestica	MD04G1173300.v1.1 MD05G1294000.v1.1 MD12G1186700.v1.1
prunus_persica	Prupe.4G070000_v2.0.a1 Prupe.6G292200_v2.0.a1
pyrus_communis	pycom05g27130 pycom10g22730 pycom12g17520
rosa_chinensis	RchiOBHm_Chr3g0460701 RchiOBHm_Chr5g0012351
rosa_laevigata	RLG00000024987 RLG00000031906
rosa_multiflora	Rmu_co8488383.1_g000001 Rmu_sc0011069.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064310 Rroxscaffold_6G00419290
rosa_rugosa	Rorug03G0045300 Rorug05G0000700
rosa_samantha	Rh3AG102800 Rh3BG106500 Rh3CG108400 Rh3DG108000 Rh5AG094800 Rh5BG091000 Rh5CG104100 Rh5DG090500
rosa_wichuraiana	Rw3G008750 Rw5G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	619, 767
AclWI	GGATC	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	3 cut(s)	179, 426, 683
AcvI	CACGTG	1 cut(s)	484
AfaI	GTAC	2 cut(s)	86, 600
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	32, 128, 353
AhlI	ACTAGT	1 cut(s)	736
AjnI	CCWGG	3 cut(s)	40, 601, 778
AleI	CACNNNNGTG	1 cut(s)	391
AluBI	AGCT	5 cut(s)	204, 220, 538, 705, 808
AluI	AGCT	5 cut(s)	204, 220, 538, 705, 808
Alw21I	GWGCWC	3 cut(s)	372, 388, 483
Alw44I	GTGCAC	2 cut(s)	368, 384
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	3 cut(s)	144, 250, 764
ApaI	GGGCCC	1 cut(s)	148
ApaLI	GTGCAC	2 cut(s)	368, 384
ApeKI	GCWGC	2 cut(s)	291, 606
ApoI	RAATTY	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	5 cut(s)	144, 145, 212, 401, 764
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	212, 401
BaeGI	GKGCMC	3 cut(s)	148, 372, 388
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	484
BbsI	GAAGAC	2 cut(s)	645, 671
Bbv12I	GWGCWC	3 cut(s)	372, 388, 483
BbvI	GCAGC	2 cut(s)	303, 593
BccI	CCATC	2 cut(s)	202, 665
BceAI	ACGGC	2 cut(s)	237, 405
BciT130I	CCWGG	3 cut(s)	42, 603, 780
BcnI	CCSGG	1 cut(s)	149
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	4 cut(s)	284, 329, 728, 737
BfmI	CTRYAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	534
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	3 cut(s)	292, 607, 767
BlpI	GCTNAGC	2 cut(s)	534, 804
BlsI	GCNGC	3 cut(s)	293, 608, 768
Bme1390I	CCNGG	4 cut(s)	42, 149, 603, 780
Bme18I	GGWCC	2 cut(s)	212, 401
BmgT120I	GGNCC	5 cut(s)	144, 145, 212, 401, 764
BmiI	GGNNCC	5 cut(s)	146, 147, 213, 559, 765
BmrFI	CCNGG	4 cut(s)	42, 149, 603, 780
BmrI	ACTGGG	2 cut(s)	276, 807
BmuI	ACTGGG	2 cut(s)	276, 807
BpiI	GAAGAC	2 cut(s)	645, 671
Bpu1102I	GCTNAGC	2 cut(s)	534, 804
BpuEI	CTTGAG	2 cut(s)	76, 120
BpuMI	CCSGG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	4 cut(s)	271, 312, 532, 802
BseBI	CCWGG	3 cut(s)	42, 603, 780
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	370, 676
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	4 cut(s)	271, 312, 532, 802
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	3 cut(s)	148, 372, 388
BseXI	GCAGC	2 cut(s)	303, 593
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	3 cut(s)	453, 592, 642
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	3 cut(s)	146, 252, 766
BshNI	GGYRCC	1 cut(s)	557
BsiHKAI	GWGCWC	3 cut(s)	372, 388, 483
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	146, 252, 766
Bsp120I	GGGCCC	1 cut(s)	144
Bsp1286I	GDGCHC	4 cut(s)	148, 372, 388, 483
Bsp143I	GATC	3 cut(s)	103, 235, 631
Bsp1720I	GCTNAGC	2 cut(s)	534, 804
BspACI	CCGC	2 cut(s)	619, 767
BspANI	GGCC	3 cut(s)	146, 252, 766
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	5 cut(s)	146, 147, 213, 559, 765
BspMAI	CTGCAG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	639
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	557
BsrI	ACTGG	4 cut(s)	271, 312, 532, 802
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	103, 235, 631
Bst2UI	CCWGG	3 cut(s)	42, 603, 780
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	402, 593
BstBAI	YACGTR	1 cut(s)	484
BstDEI	CTNAG	3 cut(s)	272, 534, 804
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	370, 676
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	3 cut(s)	106, 238, 634
BstMBI	GATC	3 cut(s)	103, 235, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	3 cut(s)	42, 603, 780
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	4 cut(s)	40, 147, 601, 778
BstSFI	CTRYAG	1 cut(s)	107
BstSLI	GKGCMC	3 cut(s)	148, 372, 388
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	303, 593
BstV2I	GAAGAC	2 cut(s)	645, 671
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	2 cut(s)	441, 786
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	146, 252, 766
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	370, 676
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	5 cut(s)	264, 465, 525, 659, 795
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	5 cut(s)	144, 145, 212, 401, 764
CsiI	ACCWGGT	1 cut(s)	778
Csp6I	GTAC	2 cut(s)	85, 599
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	2 cut(s)	373, 458
CviQI	GTAC	2 cut(s)	85, 599
DdeI	CTNAG	3 cut(s)	272, 534, 804
DpnI	GATC	3 cut(s)	105, 237, 633
DpnII	GATC	3 cut(s)	103, 235, 631
DraI	TTTAAA	2 cut(s)	595, 693
DrdI	GACNNNNNNGTC	1 cut(s)	754
DseDI	GACNNNNNNGTC	1 cut(s)	754
Eam1104I	CTCTTC	2 cut(s)	402, 593
EarI	CTCTTC	2 cut(s)	402, 593
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	212, 401
Eco57I	CTGAAG	3 cut(s)	179, 426, 683
Eco72I	CACGTG	1 cut(s)	484
Eco91I	GGTNACC	1 cut(s)	500
EcoO109I	RGGNCCY	2 cut(s)	145, 401
EcoO65I	GGTNACC	1 cut(s)	500
EcoRII	CCWGG	3 cut(s)	40, 601, 778
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	2 cut(s)	376, 461
FaiI	YATR	7 cut(s)	76, 142, 314, 374, 459, 547, 776
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	372, 457
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	3 cut(s)	292, 607, 767
FokI	GGATG	2 cut(s)	377, 683
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	292, 607, 767
FspBI	CTAG	4 cut(s)	284, 329, 728, 737
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	3 cut(s)	292, 607, 767
GsaI	CCCAGC	1 cut(s)	644
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	146, 252, 766
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	2 cut(s)	376, 461
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	2 cut(s)	218, 806
HinfI	GANTC	2 cut(s)	58, 813
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	5 cut(s)	370, 386, 517, 742, 817
Hpy188I	TCNGA	3 cut(s)	216, 342, 709
Hpy188III	TCNNGA	3 cut(s)	233, 284, 404
Hpy8I	GTNNAC	5 cut(s)	370, 386, 517, 742, 817
HpyAV	CCTTC	4 cut(s)	26, 281, 347, 754
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	9 cut(s)	109, 166, 322, 370, 386, 470, 574, 609, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	3 cut(s)	272, 534, 804
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	2 cut(s)	376, 461
HspAI	GCGC	1 cut(s)	531
Kzo9I	GATC	3 cut(s)	103, 235, 631
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	303, 593
MabI	ACCWGGT	1 cut(s)	778
MaeI	CTAG	4 cut(s)	284, 329, 728, 737
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	7 cut(s)	59, 241, 262, 500, 523, 684, 793
MalI	GATC	3 cut(s)	105, 237, 633
MboI	GATC	3 cut(s)	103, 235, 631
MboII	GAAGA	9 cut(s)	113, 341, 419, 457, 580, 645, 669, 672, 676
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	4 cut(s)	148, 372, 388, 483
MluCI	AATT	4 cut(s)	129, 160, 345, 612
MlyI	GAGTC	2 cut(s)	67, 822
MnlI	CCTC	4 cut(s)	502, 515, 587, 596
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	2 cut(s)	594, 692
MslI	CAYNNNNRTG	2 cut(s)	363, 391
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	4 cut(s)	42, 149, 603, 780
MvaI	CCWGG	3 cut(s)	42, 603, 780
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	103, 235, 631
NlaIII	CATG	2 cut(s)	376, 461
NlaIV	GGNNCC	5 cut(s)	146, 147, 213, 559, 765
NmuCI	GTSAC	6 cut(s)	59, 262, 500, 523, 684, 793
OliI	CACNNNNGTG	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	293, 608, 768
PleI	GAGTC	2 cut(s)	66, 821
PmaCI	CACGTG	1 cut(s)	484
PmlI	CACGTG	1 cut(s)	484
PpsI	GAGTC	2 cut(s)	66, 821
Ppu21I	YACGTR	1 cut(s)	484
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	3 cut(s)	40, 601, 778
PspCI	CACGTG	1 cut(s)	484
PspEI	GGTNACC	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	3 cut(s)	40, 601, 778
PspN4I	GGNNCC	5 cut(s)	146, 147, 213, 559, 765
PspOMI	GGGCCC	1 cut(s)	144
PspPI	GGNCC	5 cut(s)	144, 145, 212, 401, 764
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	86, 600
RsaNI	GTAC	2 cut(s)	85, 599
RseI	CAYNNNNRTG	2 cut(s)	363, 391
SalI	GTCGAC	1 cut(s)	815
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	594, 692
SatI	GCNGC	3 cut(s)	292, 607, 767
Sau3AI	GATC	3 cut(s)	103, 235, 631
Sau96I	GGNCC	5 cut(s)	144, 145, 212, 401, 764
SchI	GAGTC	2 cut(s)	67, 822
ScrFI	CCNGG	4 cut(s)	42, 149, 603, 780
SduI	GDGCHC	4 cut(s)	148, 372, 388, 483
SexAI	ACCWGGT	1 cut(s)	778
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	212, 401
SmiMI	CAYNNNNRTG	2 cut(s)	363, 391
SmlI	CTYRAG	2 cut(s)	55, 135
SmoI	CTYRAG	2 cut(s)	55, 135
SpeI	ACTAGT	1 cut(s)	736
Sse9I	AATT	4 cut(s)	129, 160, 345, 612
SsiI	CCGC	2 cut(s)	619, 767
SspMI	CTAG	4 cut(s)	284, 329, 728, 737
StyD4I	CCNGG	4 cut(s)	40, 147, 601, 778
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	99, 758, 816
TasI	AATT	4 cut(s)	129, 160, 345, 612
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	769
Tru1I	TTAA	2 cut(s)	594, 692
Tru9I	TTAA	2 cut(s)	594, 692
TscAI	CASTG	5 cut(s)	271, 472, 532, 666, 802
TseFI	GTSAC	6 cut(s)	59, 262, 500, 523, 684, 793
TseI	GCWGC	2 cut(s)	291, 606
Tsp45I	GTSAC	6 cut(s)	59, 262, 500, 523, 684, 793
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	2 cut(s)	683, 764
TspRI	CASTG	5 cut(s)	271, 472, 532, 666, 802
VneI	GTGCAC	2 cut(s)	368, 384
VpaK11BI	GGWCC	2 cut(s)	212, 401
XapI	RAATTY	1 cut(s)	345
XbaI	TCTAGA	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	4 cut(s)	284, 329, 728, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.