Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8488383.1

Orthogroup ID

OG0003665

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1394

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8488383.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgggtcccaagctttatatcagtccggatcaggtaacagtaggccgtaagcctgtcacagggctcaggcttaacctagaaggcaacaagcagaaccgacttgctatacatttgcagcatctagtgtcccttcccaagattcttcaaccccattgggatgcccatatggccataggtgcacctaggtggcaaggtccagaggagcaagacagtcgttggtttgagccgatcaagtggaagaacttctcccacgtaagcactgcaccaatagagcacgtagagacttctattggtgacctctctggtgttcacattgtcacaggcgctcagcttggtgtttgggattttggtgccaaaaatgttttgcacctcaaactcctcttttcaaaagtaccaaactgcacaatccgacggtctgtgtgggatcacagtcccgccgcccctccttctgcacagaggcctgatggttcttcttcatcacattcaaatagcagaaactctgatgacaaaaaggacaaactagcaaagttagtagacttgacagaaatgtcaaaggggccgcaagatattcctggacattggttagtcacaggagctaagcttggagtggacaagggaaagattgtattgcgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0012501 GO:0019222 GO:0031323 GO:0032350 GO:0033554 GO:0034050 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MACPF

Protein Analysis

211

Amino Acids

23.33

Weight (kDa)

9.6

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29690
fragaria_vesca	FvH4_6g10020 FvH4_6g10020 FvH4_6g10020 FvH4_7g07810 FvH4_7g07810 FvH4_7g07810
malus_domestica	MD04G1173300.v1.1 MD05G1294000.v1.1 MD12G1186700.v1.1
prunus_persica	Prupe.4G070000_v2.0.a1 Prupe.6G292200_v2.0.a1
pyrus_communis	pycom05g27130 pycom10g22730 pycom12g17520
rosa_chinensis	RchiOBHm_Chr3g0460701 RchiOBHm_Chr5g0012351
rosa_laevigata	RLG00000024987 RLG00000031906
rosa_multiflora	Rmu_co8488383.1_g000001 Rmu_sc0011069.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064310 Rroxscaffold_6G00419290
rosa_rugosa	Rorug03G0045300 Rorug05G0000700
rosa_samantha	Rh3AG102800 Rh3BG106500 Rh3CG108400 Rh3DG108000 Rh5AG094800 Rh5BG091000 Rh5CG104100 Rh5DG090500
rosa_wichuraiana	Rw3G008750 Rw5G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	3 cut(s)	435, 438, 560
AclWI	GGATC	2 cut(s)	36, 432
AcoI	YGGCCR	1 cut(s)	168
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	146, 387, 486
AjnI	CCWGG	1 cut(s)	571
AleI	CACNNNNGTG	1 cut(s)	184
AluBI	AGCT	4 cut(s)	13, 331, 596, 601
AluI	AGCT	4 cut(s)	13, 331, 596, 601
Alw21I	GWGCWC	2 cut(s)	181, 276
Alw26I	GTCTC	1 cut(s)	275
Alw44I	GTGCAC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	36, 432
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	4 cut(s)	43, 168, 458, 557
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	115
Asp700I	GAANNNNTTC	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	5, 194, 557
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	5, 194
AvrII	CCTAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	181, 276
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	573
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	4 cut(s)	77, 122, 183, 521
BfoI	RGCGCY	1 cut(s)	327
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	116, 438, 560
BlnI	CCTAGG	1 cut(s)	182
BlpI	GCTNAGC	2 cut(s)	327, 597
BlsI	GCNGC	3 cut(s)	117, 439, 561
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	2 cut(s)	5, 194
BmgT120I	GGNCC	3 cut(s)	5, 194, 557
BmiI	GGNNCC	4 cut(s)	6, 7, 352, 558
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	127, 148
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu1102I	GCTNAGC	2 cut(s)	327, 597
BsaAI	YACGTR	2 cut(s)	253, 277
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	79, 341
BseRI	GAGGAG	2 cut(s)	215, 368
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	3 cut(s)	246, 385, 435
BshFI	GGCC	4 cut(s)	45, 170, 460, 559
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	181, 276
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	112, 417
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	112, 417
BsnI	GGCC	4 cut(s)	45, 170, 460, 559
Bsp1286I	GDGCHC	3 cut(s)	66, 181, 276
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	28, 228, 424
Bsp1720I	GCTNAGC	2 cut(s)	327, 597
BspACI	CCGC	3 cut(s)	435, 438, 560
BspANI	GGCC	4 cut(s)	45, 170, 460, 559
BspCNI	CTCAG	2 cut(s)	78, 340
BspEI	TCCGGA	1 cut(s)	25
BspLI	GGNNCC	4 cut(s)	6, 7, 352, 558
BspPI	GGATC	2 cut(s)	36, 432
BspT107I	GGYRCC	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	3 cut(s)	28, 228, 424
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	4 cut(s)	40, 212, 414, 431
BstBAI	YACGTR	2 cut(s)	253, 277
BstDEI	CTNAG	3 cut(s)	65, 327, 597
BstEII	GGTNACC	1 cut(s)	293
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	3 cut(s)	31, 231, 427
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	28, 228, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 176
BstNI	CCWGG	1 cut(s)	573
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	45, 170, 460, 559
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	5, 194, 557
Csp6I	GTAC	1 cut(s)	392
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	3 cut(s)	65, 327, 597
DpnI	GATC	3 cut(s)	30, 230, 426
DpnII	GATC	3 cut(s)	28, 228, 424
DrdI	GACNNNNNNGTC	1 cut(s)	547
DseDI	GACNNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	182
Eco147I	AGGCCT	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	5, 194
Eco91I	GGTNACC	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	182
FaiI	YATR	5 cut(s)	18, 107, 165, 167, 173
FaqI	GGGAC	2 cut(s)	112, 417
FauI	CCCGC	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	116, 438, 560
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	3 cut(s)	116, 438, 560
FspBI	CTAG	4 cut(s)	77, 122, 183, 521
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	3 cut(s)	116, 438, 560
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	45, 170, 460, 559
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HindIII	AAGCTT	2 cut(s)	11, 599
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	4 cut(s)	179, 310, 535, 610
Hpy188I	TCNGA	2 cut(s)	410, 502
Hpy188III	TCNNGA	2 cut(s)	26, 197
Hpy8I	GTNNAC	4 cut(s)	179, 310, 535, 610
Hpy99I	CGWCG	1 cut(s)	414
HpyAV	CCTTC	3 cut(s)	74, 140, 456
HpyCH4III	ACNGT	4 cut(s)	40, 212, 414, 431
HpyCH4IV	ACGT	2 cut(s)	252, 276
HpyCH4V	TGCA	6 cut(s)	115, 179, 263, 367, 402, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 176
HpyF3I	CTNAG	3 cut(s)	65, 327, 597
HpySE526I	ACGT	2 cut(s)	252, 276
HspAI	GCGC	1 cut(s)	324
KflI	GGGWCCC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	28, 228, 424
LmnI	GCTCC	2 cut(s)	202, 593
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	127, 148
MaeI	CTAG	4 cut(s)	77, 122, 183, 521
MaeII	ACGT	2 cut(s)	252, 276
MaeIII	GTNAC	5 cut(s)	34, 55, 293, 316, 586
MalI	GATC	3 cut(s)	30, 230, 426
MboI	GATC	3 cut(s)	28, 228, 424
MboII	GAAGA	4 cut(s)	134, 250, 462, 465
MhlI	GDGCHC	3 cut(s)	66, 181, 276
MlsI	TGGCCA	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	6 cut(s)	193, 308, 380, 389, 450, 453
Mox20I	TGGCCA	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	2 cut(s)	156, 184
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	2 cut(s)	167, 176
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	3 cut(s)	28, 228, 424
NlaIV	GGNNCC	4 cut(s)	6, 7, 352, 558
NmuCI	GTSAC	4 cut(s)	55, 293, 316, 586
OliI	CACNNNNGTG	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	3 cut(s)	117, 439, 561
Ppu21I	YACGTR	2 cut(s)	253, 277
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	571
PspEI	GGTNACC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	4 cut(s)	6, 7, 352, 558
PspPI	GGNCC	3 cut(s)	5, 194, 557
PspPPI	RGGWCCY	1 cut(s)	5
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	2 cut(s)	156, 184
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	116, 438, 560
Sau3AI	GATC	3 cut(s)	28, 228, 424
Sau96I	GGNCC	3 cut(s)	5, 194, 557
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	3 cut(s)	66, 181, 276
SfaNI	GCATC	2 cut(s)	127, 148
SinI	GGWCC	2 cut(s)	5, 194
SmiMI	CAYNNNNRTG	2 cut(s)	156, 184
SseBI	AGGCCT	1 cut(s)	460
SsiI	CCGC	3 cut(s)	435, 438, 560
SspMI	CTAG	4 cut(s)	77, 122, 183, 521
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	4 cut(s)	40, 212, 414, 431
TaiI	ACGT	2 cut(s)	255, 279
TauI	GCSGC	2 cut(s)	440, 562
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	4 cut(s)	55, 293, 316, 586
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	4 cut(s)	55, 293, 316, 586
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	265
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	5, 194
XagI	CCTNNNNNAGG	1 cut(s)	57
XmaJI	CCTAGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	4 cut(s)	77, 122, 183, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.