Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010239

Physical Location & Seq

Genomic Coordinates Forward (+)

29132327 .. 29133068

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTTTCTTTCTTCCTCTCCCTGTTCGTAAAACATGAAGACACAAGAAACATGAAATGCCTTGAGTGCGAGGAGACACAGCCAAAGAGGAAGCTGACTGGCAAGGAGTGGGAGTGTCCTCAATGTGATTTTTTTAACTATGGGAGAAACATGGTATGTTTGAGGTGTGATTGCAAGCGCCCTGGAGAGGTCTCACGTGGTTCCACTAATGATGGTTTAAATATGGGATATGTAAATATGGGTGATAAAAATACGGCTGATATCGATAGCAGGCTGGCCGCTAATGAGGAGAAGGCACAGCGGTGGTTTAGTAAGATTTCTCAGCTAGACAGTACTTCAGACATGAGTAGCGCTGTATCTGATGAAGATTTTCCTGAAATAATGCCATTGAGAAAAGGAGTAAACAGATTTGTTGTGAGCACAAGAAAGACTCCATTAGAGAGGAGGCTGACCAATGCTCAATACCAAAGAAACGTGGATAATGAGGGTAATTACCAAGGCAAGGATCTTCAACCTGGGAGTGTGAATACGCCGGGGAAAGGCCCAACAGAAAAAAGCCAAACCATAAAAAACATACTCAACACTAATTCTTTACCCTGTCCTTTTCCTTTTCATTCGAAACCGACAATTCGACATTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L24e zf-RanBP

Protein Analysis

215

Amino Acids

24.42

Weight (kDa)

8.6

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	35 - 61	9.8e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17790
fragaria_vesca	FvH4_2g05470
malus_domestica	MD12G1012900.v1.1 MD14G1010700.v1.1
prunus_persica	Prupe.7G017200_v2.0.a1
pyrus_communis	pycom05g28400 pycom12g01030 pycom14g00910
rosa_chinensis	RchiOBHm_Chr3g0495901
rosa_laevigata	RLG00000022581
rosa_multiflora	Rmu_co8376015.1_g000001 Rmu_co8410629.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389920
rosa_rugosa	Rorug03G0276900 Rorug03G0277000 Rorug03G0277100
rosa_samantha	Rh3AG324800 Rh3BG360800 Rh3CG357100 Rh3DG359900
rosa_wichuraiana	Rw3G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	279, 301
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	321
AcvI	CACGTG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	334
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	187, 502, 539
AgsI	TTSAA	2 cut(s)	512, 640
AjnI	CCWGG	2 cut(s)	181, 514
AleI	CACNNNNGTG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	94, 325
AluI	AGCT	2 cut(s)	94, 325
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	2 cut(s)	68, 196
AlwI	GGATC	1 cut(s)	513
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	2 cut(s)	276, 541
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	180, 353
AspS9I	GGNCC	1 cut(s)	542
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	617
BbrPI	CACGTG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	422
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	2 cut(s)	183, 516
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	68, 196
BfaI	CTAG	1 cut(s)	326
BfoI	RGCGCY	2 cut(s)	181, 354
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	3 cut(s)	183, 516, 534
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	3 cut(s)	183, 516, 534
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	4 cut(s)	181, 496, 515, 533
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 502, 539
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	183, 516
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	4 cut(s)	181, 496, 515, 533
BseLI	CCNNNNNNNGG	3 cut(s)	187, 502, 539
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	3 cut(s)	86, 302, 457
BshFI	GGCC	2 cut(s)	278, 543
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	187, 502, 539
BsmAI	GTCTC	2 cut(s)	68, 196
BsnI	GGCC	2 cut(s)	278, 543
Bso31I	GGTCTC	1 cut(s)	196
Bsp119I	TTCGAA	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	1 cut(s)	505
BspACI	CCGC	2 cut(s)	279, 301
BspANI	GGCC	2 cut(s)	278, 543
BspCNI	CTCAG	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	4 cut(s)	181, 496, 515, 533
BssMI	GATC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	2 cut(s)	183, 516
Bst4CI	ACNGT	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	176, 272, 276
BstDEI	CTNAG	1 cut(s)	321
BstH2I	RGCGCY	2 cut(s)	181, 354
BstHHI	GCGC	2 cut(s)	180, 353
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	2 cut(s)	68, 196
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	2 cut(s)	183, 516
BstSCI	CCNGG	3 cut(s)	181, 514, 532
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	278, 543
BsuTUI	ATCGAT	1 cut(s)	264
Cac8I	GCNNGC	3 cut(s)	176, 272, 276
CfoI	GCGC	2 cut(s)	180, 353
Cfr13I	GGNCC	1 cut(s)	542
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	4 cut(s)	35, 52, 151, 343
CviJI	RGCY	9 cut(s)	82, 94, 257, 274, 278, 325, 448, 543, 558
CviKI_1	RGCY	9 cut(s)	82, 94, 257, 274, 278, 325, 448, 543, 558
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
DraI	TTTAAA	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	262
Eco47III	AGCGCT	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	321
Eco72I	CACGTG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	181, 514
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	4 cut(s)	38, 55, 154, 346
FatI	CATG	4 cut(s)	34, 51, 150, 342
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	2 cut(s)	179, 352
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	2 cut(s)	181, 354
HaeIII	GGCC	2 cut(s)	278, 543
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	2 cut(s)	180, 353
Hin1II	CATG	4 cut(s)	38, 55, 154, 346
Hin6I	GCGC	2 cut(s)	178, 351
HinP1I	GCGC	2 cut(s)	178, 351
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	340, 361
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	2 cut(s)	196, 474
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	196, 474
Hsp92II	CATG	4 cut(s)	38, 55, 154, 346
HspAI	GCGC	2 cut(s)	178, 351
Kzo9I	GATC	1 cut(s)	505
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	2 cut(s)	196, 474
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	4 cut(s)	4, 50, 377, 500
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	4 cut(s)	490, 586, 627, 640
MlyI	GAGTC	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	3 cut(s)	135, 218, 643
MslI	CAYNNNNRTG	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	3 cut(s)	183, 516, 534
MvaI	CCWGG	2 cut(s)	183, 516
MwoI	GCNNNNNNNGC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	4 cut(s)	38, 55, 154, 346
NlaIV	GGNNCC	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	617
OliI	CACNNNNGTG	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	424
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	424
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	181, 514
PspCI	CACGTG	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	181, 514
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	3 cut(s)	135, 218, 643
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	3 cut(s)	183, 516, 534
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	7 cut(s)	96, 167, 192, 199, 327, 477, 517
SfuI	TTCGAA	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	4 cut(s)	490, 586, 627, 640
SsiI	CCGC	2 cut(s)	279, 301
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	3 cut(s)	181, 514, 532
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	2 cut(s)	199, 477
TaqI	TCGA	3 cut(s)	264, 617, 631
TasI	AATT	4 cut(s)	490, 586, 627, 640
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	135, 218, 643
Tru9I	TTAA	3 cut(s)	135, 218, 643
TspDTI	ATGAA	4 cut(s)	51, 68, 378, 602
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	326
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.