Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010239

Physical Location & Seq

Genomic Coordinates Reverse (-)

27402879 .. 27403142

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCAGTGTTTGAGGTCGTCGTGGATCTGCACCTTCACCGATGTATCACCTCCGGATGACGATGAGCTCCTCAACTCGGAGCCTGCAGAGCTTGTCGACCATAAACTCCTGGCCGCCGTCGCCGTGCGATTCTGCTTCGTTTTGCTACGAAACGACGATGCGGTGTTTGAGGTCGTCGTGGATCTGCACCTTCACCGATGTATCACCGCCGTCGAGTCATCCGGAGGTGAAGGCGGTGCGCTGACCGAAAGTGTGTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L24e zf-RanBP

Protein Analysis

87

Amino Acids

9.48

Weight (kDa)

4.31

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17790
fragaria_vesca	FvH4_2g05470
malus_domestica	MD12G1012900.v1.1 MD14G1010700.v1.1
prunus_persica	Prupe.7G017200_v2.0.a1
pyrus_communis	pycom05g28400 pycom12g01030 pycom14g00910
rosa_chinensis	RchiOBHm_Chr3g0495901
rosa_laevigata	RLG00000022581
rosa_multiflora	Rmu_co8376015.1_g000001 Rmu_co8410629.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389920
rosa_rugosa	Rorug03G0276900 Rorug03G0277000 Rorug03G0277100
rosa_samantha	Rh3AG324800 Rh3BG360800 Rh3CG357100 Rh3DG359900
rosa_wichuraiana	Rw3G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AccIII	TCCGGA	2 cut(s)	52, 221
AciI	CCGC	4 cut(s)	114, 161, 207, 234
AclWI	GGATC	2 cut(s)	32, 189
AcoI	YGGCCR	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	67, 91
AluI	AGCT	2 cut(s)	67, 91
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	32, 189
Aor13HI	TCCGGA	2 cut(s)	52, 221
AoxI	GGCC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	5 cut(s)	28, 39, 185, 196, 239
BaeI	ACNNNNGTAYC	4 cut(s)	27, 60, 184, 217
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BceAI	ACGGC	3 cut(s)	101, 107, 194
BciT130I	CCWGG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	148
BsaWI	WCCGGW	2 cut(s)	52, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseAI	TCCGGA	2 cut(s)	52, 221
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	61, 218
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	59
BsgI	GTGCAG	2 cut(s)	13, 170
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	53, 222
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp13I	TCCGGA	2 cut(s)	52, 221
Bsp143I	GATC	2 cut(s)	24, 181
BspACI	CCGC	4 cut(s)	114, 161, 207, 234
BspANI	GGCC	1 cut(s)	113
BspEI	TCCGGA	2 cut(s)	52, 221
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	2 cut(s)	32, 189
BssMI	GATC	2 cut(s)	24, 181
Bst2UI	CCWGG	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	61, 218
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	27, 184
BstMBI	GATC	2 cut(s)	24, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 119
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	84
BstX2I	RGATCY	2 cut(s)	24, 181
BstYI	RGATCY	2 cut(s)	24, 181
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	61, 218
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	241
CviJI	RGCY	4 cut(s)	67, 82, 91, 113
CviKI_1	RGCY	4 cut(s)	67, 82, 91, 113
DpnI	GATC	2 cut(s)	26, 183
DpnII	GATC	2 cut(s)	24, 181
EaeI	YGGCCR	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	69
FaiI	YATR	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	68, 205
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	114
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	53, 222
HhaI	GCGC	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	129, 215
HpaII	CCGG	2 cut(s)	53, 222
HphI	GGTGA	5 cut(s)	28, 39, 185, 196, 239
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	53, 222
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	5 cut(s)	22, 122, 158, 179, 215
HpyAV	CCTTC	3 cut(s)	43, 200, 224
HpyCH4V	TGCA	4 cut(s)	4, 30, 86, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 119
HspAI	GCGC	1 cut(s)	239
Kpn2I	TCCGGA	2 cut(s)	52, 221
Kzo9I	GATC	2 cut(s)	24, 181
LmnI	GCTCC	2 cut(s)	72, 79
LpnPI	CCDG	5 cut(s)	66, 95, 96, 122, 235
LweI	GCATC	1 cut(s)	148
MalI	GATC	2 cut(s)	26, 183
MboI	GATC	2 cut(s)	24, 181
MflI	RGATCY	2 cut(s)	24, 181
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	6, 60, 80, 163, 218
MroI	TCCGGA	2 cut(s)	52, 221
MspI	CCGG	2 cut(s)	53, 222
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	88, 119
NdeII	GATC	2 cut(s)	24, 181
NlaIV	GGNNCC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	24, 181
SacI	GAGCTC	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	95
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	24, 181
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	8 cut(s)	17, 35, 52, 69, 93, 174, 192, 229
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	84
SsiI	CCGC	4 cut(s)	114, 161, 207, 234
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	108
TaqI	TCGA	2 cut(s)	96, 213
TaqII	GACCGA	1 cut(s)	260
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.