Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8376015.1

Orthogroup ID

OG0010239

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1145

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8376015.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 835 bp

agcgaaacaacctctacaatagagaacttgttgaatcatctgtccgtaatctgttgagagaaatggcgaagctttgttatagcgctccagagtctaactcttttgggacagtgcagaatcaaagttctaataatcatggagcaactcctgggccttttggcaaaactattgaaatgaaaagaggcgactggatttgctcaaggtgcaatttcatgaacttcgcaaaaaacatgaaatgccttgaatgcaatgaggcaaagccacacagacagctgactggcagagagtgggagtgtcctcaatgtgatttttttaactacgggagaaacatggtatgcttgaggtgtgattgcaagcggcccggggaggtctcacgtggtaccactaaaactaatttagatattggattcgacaatggagatgatacaaataaagctgatatcaatagcaggctggctgccaatgaagagaaggcacagcggtggtttagtaagatttctcagttagacagtacttcagacatgagcagtgcaatatcagatgaagattttcctgaaataatgccattgaggaaaggagtaaatagatttgttgtgagtacaaggaagacaccattagagaggaggctggtgaatgcccagtaccaaagaagtttggatactgatgaaatcaaggatctccaaaaggggagtgcaactaagtcacttggtgctacatcgagccagactttagatactattctcggtcgttcatctgtttctgaatcaaatactaccaataccaatgctggagaacatggtaaaactgacaacccctcttttatctctagctcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L24e zf-RanBP

Protein Analysis

278

Amino Acids

31.07

Weight (kDa)

8.32

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17790
fragaria_vesca	FvH4_2g05470
malus_domestica	MD12G1012900.v1.1 MD14G1010700.v1.1
prunus_persica	Prupe.7G017200_v2.0.a1
pyrus_communis	pycom05g28400 pycom12g01030 pycom14g00910
rosa_chinensis	RchiOBHm_Chr3g0495901
rosa_laevigata	RLG00000022581
rosa_multiflora	Rmu_co8376015.1_g000001 Rmu_co8410629.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389920
rosa_rugosa	Rorug03G0276900 Rorug03G0277000 Rorug03G0277100
rosa_samantha	Rh3AG324800 Rh3BG360800 Rh3CG357100 Rh3DG359900
rosa_wichuraiana	Rw3G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	2 cut(s)	357, 480
AclWI	GGATC	1 cut(s)	683
AcuI	CTGAAG	1 cut(s)	500
AcvI	CACGTG	1 cut(s)	376
AdeI	CACNNNGTG	1 cut(s)	709
AfaI	GTAC	4 cut(s)	381, 513, 600, 643
AfeI	AGCGCT	1 cut(s)	84
AgsI	TTSAA	3 cut(s)	34, 172, 244
AjnI	CCWGG	1 cut(s)	147
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	4 cut(s)	72, 273, 436, 830
AluI	AGCT	4 cut(s)	72, 273, 436, 830
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	361
Aor51HI	AGCGCT	1 cut(s)	84
AoxI	GGCC	2 cut(s)	151, 358
ApeKI	GCWGC	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	548
Asp718I	GGTACC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	151, 359
AsuC2I	CCSGG	2 cut(s)	362, 363
AsuHPI	GGTGA	1 cut(s)	642
AvaI	CYCGRG	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	379
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbrPI	CACGTG	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	613
BbvI	GCAGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	651
BcnI	CCSGG	2 cut(s)	362, 363
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	827
BfoI	RGCGCY	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	2 cut(s)	358, 458
BlsI	GCNGC	2 cut(s)	359, 459
BmcAI	AGTACT	1 cut(s)	513
Bme1390I	CCNGG	3 cut(s)	149, 362, 363
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	151, 359
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	3 cut(s)	149, 362, 363
BmrI	ACTGGG	1 cut(s)	633
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	613
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	2 cut(s)	71, 809
Bpu10I	CCTNAGC	1 cut(s)	831
BpuEI	CTTGAG	2 cut(s)	183, 360
BpuMI	CCSGG	2 cut(s)	362, 363
BsaAI	YACGTR	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	148, 361, 362
Bse1I	ACTGG	3 cut(s)	193, 282, 639
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	148, 361, 362
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	514
BseNI	ACTGG	3 cut(s)	193, 282, 639
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	747
BshFI	GGCC	2 cut(s)	153, 360
BshNI	GGYRCC	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	2 cut(s)	250, 639
BsnI	GGCC	2 cut(s)	153, 360
Bso31I	GGTCTC	1 cut(s)	375
BsoBI	CYCGRG	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	675
BspACI	CCGC	2 cut(s)	357, 480
BspANI	GGCC	2 cut(s)	153, 360
BspCNI	CTCAG	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	683
BspT107I	GGYRCC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	193, 282, 639
BssECI	CCNNGG	3 cut(s)	148, 361, 362
BssMI	GATC	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	111, 511
Bst6I	CTCTTC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	355, 451, 455
BstDEI	CTNAG	3 cut(s)	500, 698, 831
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	678
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	675
BstMCI	CGRYCG	1 cut(s)	747
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 245
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	3 cut(s)	147, 360, 361
BstV1I	GCAGC	1 cut(s)	444
BstV2I	GAAGAC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	153, 360
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	116, 534
Cac8I	GCNNGC	3 cut(s)	355, 451, 455
CciI	TCATGA	1 cut(s)	212
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	151, 359
Cfr9I	CCCGGG	1 cut(s)	361
Csp6I	GTAC	4 cut(s)	380, 512, 599, 642
CviAII	CATG	6 cut(s)	136, 213, 231, 330, 522, 796
CviQI	GTAC	4 cut(s)	380, 512, 599, 642
DdeI	CTNAG	3 cut(s)	500, 698, 831
DpnI	GATC	1 cut(s)	677
DpnII	GATC	1 cut(s)	675
DraIII	CACNNNGTG	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	441
Eco47III	AGCGCT	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	500
Eco72I	CACGTG	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	441
FaeI	CATG	6 cut(s)	139, 216, 234, 333, 525, 799
FaiI	YATR	8 cut(s)	80, 137, 214, 232, 331, 336, 523, 797
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	6 cut(s)	135, 212, 230, 329, 521, 795
Fnu4HI	GCNGC	2 cut(s)	358, 458
Fsp4HI	GCNGC	2 cut(s)	358, 458
FspBI	CTAG	1 cut(s)	827
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	358, 458
GsuI	CTGGAG	2 cut(s)	71, 809
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	153, 360
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	139, 216, 234, 333, 525, 799
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	5 cut(s)	34, 91, 117, 407, 763
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	1 cut(s)	642
Hpy188I	TCNGA	3 cut(s)	519, 540, 762
Hpy188III	TCNNGA	3 cut(s)	88, 213, 553
HpyAV	CCTTC	1 cut(s)	465
HpyCH4III	ACNGT	2 cut(s)	111, 511
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	6 cut(s)	114, 206, 248, 353, 532, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 245
HpyF3I	CTNAG	3 cut(s)	500, 698, 831
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	6 cut(s)	139, 216, 234, 333, 525, 799
HspAI	GCGC	1 cut(s)	83
KpnI	GGTACC	1 cut(s)	383
Kzo9I	GATC	1 cut(s)	675
LmnI	GCTCC	2 cut(s)	90, 139
Lsp1109I	GCAGC	1 cut(s)	444
MaeI	CTAG	1 cut(s)	827
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	1 cut(s)	677
MboI	GATC	1 cut(s)	675
MboII	GAAGA	3 cut(s)	478, 556, 618
MflI	RGATCY	1 cut(s)	675
MluCI	AATT	2 cut(s)	207, 393
MlyI	GAGTC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	273, 480
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	3 cut(s)	149, 362, 363
Mva1269I	GAATGC	2 cut(s)	250, 639
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	203, 245
NciI	CCSGG	2 cut(s)	362, 363
NdeII	GATC	1 cut(s)	675
NlaIII	CATG	6 cut(s)	139, 216, 234, 333, 525, 799
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	701
OliI	CACNNNNGTG	1 cut(s)	480
PagI	TCATGA	1 cut(s)	212
PctI	GAATGC	2 cut(s)	250, 639
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	4 cut(s)	34, 117, 407, 763
PkrI	GCNGC	2 cut(s)	359, 459
PleI	GAGTC	1 cut(s)	99
PmaCI	CACGTG	1 cut(s)	376
PmlI	CACGTG	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	147
PspCI	CACGTG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	151, 359
PsuI	RGATCY	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	4 cut(s)	381, 513, 600, 643
RsaNI	GTAC	4 cut(s)	380, 512, 599, 642
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	358, 458
Sau3AI	GATC	1 cut(s)	675
Sau96I	GGNCC	2 cut(s)	151, 359
ScaI	AGTACT	1 cut(s)	513
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	3 cut(s)	149, 362, 363
SetI	ASST	9 cut(s)	14, 74, 205, 275, 346, 371, 378, 438, 832
SmaI	CCCGGG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	198, 339
SmoI	CTYRAG	2 cut(s)	198, 339
Sse9I	AATT	2 cut(s)	207, 393
SsiI	CCGC	2 cut(s)	357, 480
SspMI	CTAG	1 cut(s)	827
StyD4I	CCNGG	3 cut(s)	147, 360, 361
TaaI	ACNGT	2 cut(s)	111, 511
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	410, 718
TaqII	GACCGA	1 cut(s)	733
TasI	AATT	2 cut(s)	207, 393
TatI	WGTACW	2 cut(s)	511, 598
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	4 cut(s)	34, 117, 407, 763
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	2 cut(s)	116, 534
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	8 cut(s)	190, 201, 229, 247, 479, 557, 680, 740
TspGWI	ACGGA	1 cut(s)	34
TspMI	CCCGGG	1 cut(s)	361
TspRI	CASTG	2 cut(s)	116, 534
XmaI	CCCGGG	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	1 cut(s)	827
ZrmI	AGTACT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.