Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8410629.1

Orthogroup ID

OG0010239

Physical Location & Seq

Genomic Coordinates Forward (+)

14 .. 1111

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8410629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atggaggagagtgggaagttagtgagagaccaaaatgagtctgtcactttgaagggcagtgaattggaaggtgtttctgggaacaatcaatctggtaaatcagaagacagtctgatatctgcaaagtctatgaaacaagccggcagcaggaatgaagaaaaggaacaagctgaaaaatctgagagatggtttaagagggttgcagagttgcatgatgttacagatcttgcaagtgcaatttccgatgaggacttccctgaaatcatgccggtccgcaaaggagagaatcgatttatggtcagcaagaagaaagatcgttcttcgtcttctccagcatacaagagagtaccagctatggaacaacctaacagtgccaactatgttcccttcgttcccttcccacctgactactttgctaaagttgacaatccacagacaagcgggacagctttggataacaagactggtgttaagtcaactccaactatgatgccagagaaccctgtagacaaatcgtttgacacaagacctgggacgctgaatactagtcatagtcaacagatggaaagtcagcaaagccgtgttgccaacttgaaatctaggtcttctgaagataatcctagaaagaaatggactagctctgttaatggacccccagccagtggaaattctgccttgaattttgctaatactaccactgatggtacggacagattgaacagtggaacttcagggaaagagaattttgatgagttaatggattcgcaccatccgtccaatgaacagaacattagacagcgctggactgggaagagtttggaggggtcagcagtgaaggaaccaaatcctttagatatgtcagaggaggcaaaggcagagagatggtttaagcgtgttgctcagattaaagacatatcagagctgagtcagattcctgatgaagatttcccatcaataatgccaatgcgtaaaggagtgaatcggtttgtggtcagcaagaggaaaacaccgttggagaggaggttgacgtctccacagtacagaaaaagccttcctgttgtgagctctgatccagtgaaggaagatgatggtaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L24e zf-RanBP

Protein Analysis

365

Amino Acids

40.67

Weight (kDa)

6.51

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17790
fragaria_vesca	FvH4_2g05470
malus_domestica	MD12G1012900.v1.1 MD14G1010700.v1.1
prunus_persica	Prupe.7G017200_v2.0.a1
pyrus_communis	pycom05g28400 pycom12g01030 pycom14g00910
rosa_chinensis	RchiOBHm_Chr3g0495901
rosa_laevigata	RLG00000022581
rosa_multiflora	Rmu_co8376015.1_g000001 Rmu_co8410629.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389920
rosa_rugosa	Rorug03G0276900 Rorug03G0277000 Rorug03G0277100
rosa_samantha	Rh3AG324800 Rh3BG360800 Rh3CG357100 Rh3DG359900
rosa_wichuraiana	Rw3G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1031
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	2 cut(s)	274, 441
AclWI	GGATC	1 cut(s)	1064
AcsI	RAATTY	3 cut(s)	667, 679, 742
AcuI	CTGAAG	2 cut(s)	630, 714
AcyI	GRCGYC	1 cut(s)	1028
AfaI	GTAC	3 cut(s)	348, 706, 1040
AfeI	AGCGCT	1 cut(s)	800
AfiI	CCNNNNNNNGG	2 cut(s)	147, 662
AgsI	TTSAA	4 cut(s)	52, 595, 679, 718
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	995, 1027
AluBI	AGCT	6 cut(s)	170, 353, 449, 639, 922, 1065
AluI	AGCT	6 cut(s)	170, 353, 449, 639, 922, 1065
Alw21I	GWGCWC	1 cut(s)	1067
Alw26I	GTCTC	2 cut(s)	21, 1035
AlwI	GGATC	1 cut(s)	1064
Aor51HI	AGCGCT	1 cut(s)	800
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	3 cut(s)	667, 679, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	2 cut(s)	271, 650
AvaII	GGWCC	2 cut(s)	271, 650
BanII	GRGCYC	1 cut(s)	1067
BbsI	GAAGAC	3 cut(s)	111, 318, 597
Bbv12I	GWGCWC	1 cut(s)	1067
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	7 cut(s)	180, 556, 695, 777, 876, 958, 1082
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	21, 1035
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	4 cut(s)	546, 600, 621, 636
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	802
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	2 cut(s)	271, 650
BmgT120I	GGNCC	2 cut(s)	271, 650
BmiI	GGNNCC	2 cut(s)	652, 840
BmrFI	CCNGG	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	816
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	816
BpiI	GAAGAC	3 cut(s)	111, 318, 597
BpmI	CTGGAG	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	1028
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	1007, 1037
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 662
Bse118I	RCCGGY	2 cut(s)	140, 268
Bse1I	ACTGG	4 cut(s)	469, 660, 811, 1073
BseBI	CCWGG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	1 cut(s)	769
BseLI	CCNNNNNNNGG	2 cut(s)	147, 662
BseMII	CTCAG	3 cut(s)	171, 914, 914
BseNI	ACTGG	4 cut(s)	469, 660, 811, 1073
BseRI	GAGGAG	3 cut(s)	20, 878, 1033
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	655
BshVI	ATCGAT	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	1067
BsiSI	CCGG	2 cut(s)	141, 269
BslFI	GGGAC	2 cut(s)	457, 547
BslI	CCNNNNNNNGG	2 cut(s)	147, 662
BsmAI	GTCTC	2 cut(s)	21, 1035
BsmBI	CGTCTC	1 cut(s)	1035
BsmFI	GGGAC	2 cut(s)	457, 547
Bso31I	GGTCTC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	1067
Bsp143I	GATC	3 cut(s)	223, 313, 1069
BspACI	CCGC	2 cut(s)	274, 441
BspCNI	CTCAG	3 cut(s)	172, 913, 915
BspDI	ATCGAT	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	652, 840
BspPI	GGATC	1 cut(s)	1064
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	2 cut(s)	140, 268
BsrI	ACTGG	4 cut(s)	469, 660, 811, 1073
BssAI	RCCGGY	2 cut(s)	140, 268
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	3 cut(s)	223, 313, 1069
BssNI	GRCGYC	1 cut(s)	1028
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	5 cut(s)	110, 371, 722, 1011, 1038
Bst6I	CTCTTC	1 cut(s)	806
BstACI	GRCGYC	1 cut(s)	1028
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	180, 900, 923
BstF5I	GGATG	1 cut(s)	769
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	3 cut(s)	226, 316, 1072
BstMAI	GTCTC	2 cut(s)	21, 1035
BstMBI	GATC	3 cut(s)	223, 313, 1069
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	3 cut(s)	111, 318, 597
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	769
BtsI	GCAGTG	2 cut(s)	64, 837
BtsIMutI	CAGTG	7 cut(s)	64, 376, 667, 696, 727, 837, 1080
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	801
Cfr10I	RCCGGY	2 cut(s)	140, 268
Cfr13I	GGNCC	2 cut(s)	271, 650
ClaI	ATCGAT	1 cut(s)	289
CpoI	CGGWCCG	1 cut(s)	271
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	3 cut(s)	347, 705, 1039
CspI	CGGWCCG	1 cut(s)	271
CviAII	CATG	2 cut(s)	212, 265
CviQI	GTAC	3 cut(s)	347, 705, 1039
DdeI	CTNAG	3 cut(s)	180, 900, 923
DpnI	GATC	3 cut(s)	225, 315, 1071
DpnII	GATC	3 cut(s)	223, 313, 1069
Eam1104I	CTCTTC	1 cut(s)	806
EarI	CTCTTC	1 cut(s)	806
Ecl136II	GAGCTC	1 cut(s)	1065
Eco24I	GRGCYC	1 cut(s)	1067
Eco31I	GGTCTC	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	271, 650
Eco47III	AGCGCT	1 cut(s)	800
Eco53kI	GAGCTC	1 cut(s)	1065
Eco57I	CTGAAG	2 cut(s)	630, 714
EcoICRI	GAGCTC	1 cut(s)	1065
EcoRII	CCWGG	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	1067
Esp3I	CGTCTC	1 cut(s)	1035
FaeI	CATG	2 cut(s)	215, 268
FaqI	GGGAC	2 cut(s)	457, 547
FatI	CATG	2 cut(s)	211, 264
FauI	CCCGC	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	756
FriOI	GRGCYC	1 cut(s)	1067
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	4 cut(s)	546, 600, 621, 636
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	802
HapII	CCGG	2 cut(s)	141, 269
HgaI	GACGC	1 cut(s)	544
HhaI	GCGC	1 cut(s)	801
Hin1I	GRCGYC	1 cut(s)	1028
Hin1II	CATG	2 cut(s)	215, 268
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HincII	GTYRAC	4 cut(s)	424, 477, 557, 1026
HindII	GTYRAC	4 cut(s)	424, 477, 557, 1026
HinfI	GANTC	6 cut(s)	38, 286, 761, 925, 931, 979
HpaII	CCGG	2 cut(s)	141, 269
Hpy166II	GTNNAC	5 cut(s)	424, 477, 508, 557, 1026
Hpy188III	TCNNGA	1 cut(s)	935
Hpy8I	GTNNAC	5 cut(s)	424, 477, 508, 557, 1026
HpyAV	CCTTC	7 cut(s)	46, 62, 397, 406, 829, 1061, 1072
HpyCH4III	ACNGT	5 cut(s)	110, 371, 722, 1011, 1038
HpyCH4IV	ACGT	1 cut(s)	1028
HpyCH4V	TGCA	5 cut(s)	122, 203, 211, 230, 236
HpyF3I	CTNAG	3 cut(s)	180, 900, 923
HpySE526I	ACGT	1 cut(s)	1028
Hsp92I	GRCGYC	1 cut(s)	1028
Hsp92II	CATG	2 cut(s)	215, 268
HspAI	GCGC	1 cut(s)	799
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	223, 313, 1069
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	4 cut(s)	546, 600, 621, 636
MaeII	ACGT	1 cut(s)	1028
MaeIII	GTNAC	3 cut(s)	43, 217, 1091
MalI	GATC	3 cut(s)	225, 315, 1071
MboI	GATC	3 cut(s)	223, 313, 1069
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	1067
MluCI	AATT	5 cut(s)	62, 237, 667, 679, 742
MlyI	GAGTC	2 cut(s)	47, 934
MmeI	TCCRAC	2 cut(s)	506, 993
MnlI	CCTC	8 cut(s)	189, 241, 814, 856, 859, 993, 1011, 1014
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	6 cut(s)	192, 471, 645, 755, 888, 906
MspI	CCGG	2 cut(s)	141, 269
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
NaeI	GCCGGC	1 cut(s)	142
NdeII	GATC	3 cut(s)	223, 313, 1069
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	215, 268
NlaIV	GGNNCC	2 cut(s)	652, 840
NmuCI	GTSAC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	770
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	4 cut(s)	286, 761, 931, 979
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	2 cut(s)	46, 933
PpsI	GAGTC	2 cut(s)	46, 933
Psp124BI	GAGCTC	1 cut(s)	1067
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	652, 840
PspPI	GGNCC	2 cut(s)	271, 650
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	3 cut(s)	348, 706, 1040
RsaNI	GTAC	3 cut(s)	347, 705, 1039
Rsr2I	CGGWCCG	1 cut(s)	271
RsrII	CGGWCCG	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	1067
SaqAI	TTAA	6 cut(s)	192, 471, 645, 755, 888, 906
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	3 cut(s)	223, 313, 1069
Sau96I	GGNCC	2 cut(s)	271, 650
SchI	GAGTC	2 cut(s)	47, 934
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	1067
SfaNI	GCATC	1 cut(s)	480
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	271, 650
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	5 cut(s)	62, 237, 667, 679, 742
SsiI	CCGC	2 cut(s)	274, 441
SspMI	CTAG	4 cut(s)	546, 600, 621, 636
SstI	GAGCTC	1 cut(s)	1067
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	5 cut(s)	110, 371, 722, 1011, 1038
TaiI	ACGT	1 cut(s)	1031
TaqI	TCGA	1 cut(s)	289
TasI	AATT	5 cut(s)	62, 237, 667, 679, 742
TatI	WGTACW	1 cut(s)	1038
TfiI	GAWTC	4 cut(s)	286, 761, 931, 979
Tru1I	TTAA	6 cut(s)	192, 471, 645, 755, 888, 906
Tru9I	TTAA	6 cut(s)	192, 471, 645, 755, 888, 906
TscAI	CASTG	7 cut(s)	64, 376, 667, 703, 727, 837, 1080
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	146, 168, 795, 954
TspGWI	ACGGA	2 cut(s)	722, 762
TspRI	CASTG	7 cut(s)	64, 376, 667, 703, 727, 837, 1080
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	271, 650
XapI	RAATTY	3 cut(s)	667, 679, 742
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	4 cut(s)	546, 600, 621, 636
ZraI	GACGTC	1 cut(s)	1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.