Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010239

Physical Location & Seq

Genomic Coordinates Forward (+)

4160079 .. 4163544

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGCCCTCCCTATTGGAGATGAGCTTTGTTCTTGAGCCTACTCTCCACCACGACGCACCCTTTGCCTCTTCATCTCCACCACCGTTTCCCTTGTCTCCTCCTCCTCCGCCTGTCCCGCCGCTCGTCCAGTCCCCAACCCTTGTCTCGCCTTCATCATTCTACTCTCTCTTGTCGCTCCTCCTCTTTACTAGTCTCAAATCCTCCCGTCATTTCCATTTCCACTCCAACGCCTCTCCAGTTTCCCCTGCCTACCCTTCTGCCGACCCACCCCTGCACCCCTGGCCGGAGTGGTCGTACCTCCTTAATGCTCTCTCTGCCGCCGGTTATGATGAAGTCCACGGCCACGACGTCTTCACCGGGGATTTGCCCGACCACTTTGTGCGCGCTGCCCGTGTTTGTTTGGCCTTCGCCACCGCACGACCTGGCCTTTTGAGGCACATGGCTTTCTCTCAAATCTCTATTTATCATCTGCGAATTATGCCAAGCCACATTTATCATCATTATTTACTTAATTCTTTTCCCCTGCAGGTTGCTTTCTCGGAGAGATTTAGAGGCTGTGGTGGAGAATGGGACGCCGTTTTGTTCCAGAATGGCGATGATTCAAGCCGGAGGATGACCTCATTTCTCGCCCAAGGCTCTACCAATGTGAGCTCTATGAATGCTCTTGTTTTGAAAACCTATTACTTTTACTCTATGAATGCTCTTCAAGGGCGTCTCTACCGGAGATTATTAGATGTTCCAACTGATAATGATCAAGTTAAAGCCTTCGATACTGATAAAGCACAAACGGTTGATTTGATGAGATTTATATTGAGTTATGCTAGCACTCCTGTTTTTTCTTCAGAGCGAAACAACCTCTACAATAGAGAACTTGTTGAATCATCTGTCCGTAATCTGTTGAGAGAAATGGTGAAGCTTTGTTATAGCGCTCCAGAGTCTAACTCTTTTGGGACAGTGCAGAATCAAAGTTCTAATAATCATGGAGCAACTCCTGGGCCTTTTGGCAAAACTATTGAAATGAAAAGAGGCGACTGGATTTGCTCAAGGTGCAATTTCATGAACTTCGCAAAAAACATGAAATGCCTTGAATGCAATGAGGCAAAGCCACACAGACAGCTGACTGGCAGAGAGTGGGAGTGTCCTCATGAGAATAACTTCTTCCTCAGATGTGATTTTTTTAACTACGGGAGAAACATGGTATGCATGAGGTGTGATTGCAAGCGGCCCAGGGAGGTCTCACGTGGTACCACTAAAACTAATTTAGATATTGGATTCGACAATGGAGATGATACAAATAAAGCTGATATCAATAGCAGGCTGGCTGCCAATGAAGAGAAGGCACAGCGGTGGTTTAGTAAGATTTCTCAGTTAGACAGTACTTCAGACATGAGCAGTGCAATATCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGAGTAAATAGATTTGTTGTGAGTACAAGGAAGACACCATTAGAGAGGAGGCTGGTGAATGCCCAGTACCAAAGAAGTTTGGATACTGATGAAATCAAGGATCTCCAAAAGGGGAGTGCAACTAAGTCACTTGGTGCTACATCGAGCCAGACTTTAGATACTATTCTCGGTCGTTCATCTGTTTCTGAATCAAATGCTACCAATACCAATGCTGGAGAACATGGTAAAACTGATAACCCCTCTTTTATCTCTAGCTCAGGTTCCACACAGTATCAACAGCCCAGACGGAGTAACTCCAATTATGCCCCATTTGTGCCATTACCTGCAGATGCGTTTGCTAAGAAACCTGAGACTTCATATATGGAGGAGAGTGGGAAGTTAGTGAGAGACCAAAATGAGTCTGTCACTTTGAAGGGCAGTGAATTGGAAGGTGTTTCTGGGAACAATCAATCTGGTAAATCAGAAGACAGTCTGATATCTGCAAAGGCTATGAAACAAGCTGGCAGCAGGAATGAAGAAAAGGAACAAGCTGAAAAATCTGAGAGATGGTTTAAGAGGGTTGCAGAGTTGCATGATGTTACAGATCTTGCAAGTGCAATTTCCGATGAGGACTTCCCTGAAATCATGCCGGTCCGCAAAGGAGAGAATCGATTTATGGTCAGCAAGAAGAAAGATCGTTCTTCGTCTTCTCCAGCATACAAGAGAGTACCAGCTATGGAACAACCTAACAGTGCCAACTATGTTCCCTTCGTTCCCTTCCCACCTGACTACTTTGCTAAAGTTGACAATCCACAGACAAGCGGGACAGCTTTGGATAACAAGACTGGTGTTAAGTCAACTCCAACTATGATGCCAGAGAACCCTGTAGACAAATCGTTTGACACAAGACCTGGGACGCTGAATACTGGTCATAGTCAACAGATGGAAAGTCAGCAAAGCCGTGTTGCCAACTTGAAATCTAGATCTTCTGAAGATAATCCTAGAAAGAAATGGACTAGCTCTGTTAATGGACCCCCAGCCAGTGGAAATTCTGCTTTGAATTTTGCTAATACTACCACTGATAGTACGGACAGATTGAACAGTGGAACTTCAGGGAAAGAGAATTTTGATGAGTTAATGGATTCGCACCATCCGTCCAATGAACAGAACATTAGACAGCGCTGGACTGGGAAGAGTTTGGAGGGGTCAGCAGTGAAGGAACCAAATCCTTTAGATATGTCAGAGGAGGCAAAGGCAGAGAGATGGTTTAAGCGTGTTGCTCAGATTAAAGACATATCAGAGCTGAGTCAGATTCCTGATGAAGATTTCCCATCAATAATGCCAATGCGTAAAGGAGTGAATCGGTTTGTGGTCAGCAAGAGGAAAACACCGTTGGAGAGGAGGTTGACGTCTCCACAGTACAGAAAAAGCCTTCCTGTTGTGAGCTCTGATCCAGTGAAGGAAGAGGATGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L24e zf-RanBP

Protein Analysis

965

Amino Acids

108.01

Weight (kDa)

7.6

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	342 - 364	2.5e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17790
fragaria_vesca	FvH4_2g05470
malus_domestica	MD12G1012900.v1.1 MD14G1010700.v1.1
prunus_persica	Prupe.7G017200_v2.0.a1
pyrus_communis	pycom05g28400 pycom12g01030 pycom14g00910
rosa_chinensis	RchiOBHm_Chr3g0495901
rosa_laevigata	RLG00000022581
rosa_multiflora	Rmu_co8376015.1_g000001 Rmu_co8410629.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389920
rosa_rugosa	Rorug03G0276900 Rorug03G0277000 Rorug03G0277100
rosa_samantha	Rh3AG324800 Rh3BG360800 Rh3CG357100 Rh3DG359900
rosa_wichuraiana	Rw3G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	351, 2831
Acc36I	ACCTGC	2 cut(s)	517, 1771
Acc65I	GGTACC	1 cut(s)	1244
AccB1I	GGYRCC	1 cut(s)	1244
AccB7I	CCANNNNNTGG	1 cut(s)	2462
AccBSI	CCGCTC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	2307
AccII	CGCG	1 cut(s)	384
AciI	CCGC	9 cut(s)	107, 116, 119, 318, 414, 1222, 1345, 2074, 2241
AclWI	GGATC	2 cut(s)	1548, 2864
AcoI	YGGCCR	2 cut(s)	281, 340
AcsI	RAATTY	3 cut(s)	2467, 2479, 2542
AcuI	CTGAAG	4 cut(s)	825, 1365, 2430, 2514
AcvI	CACGTG	1 cut(s)	1241
AcyI	GRCGYC	4 cut(s)	348, 573, 712, 2828
AdeI	CACNNNGTG	2 cut(s)	379, 1574
AfaI	GTAC	8 cut(s)	296, 1246, 1378, 1465, 1508, 2148, 2506, 2840
AfeI	AGCGCT	2 cut(s)	928, 2600
AfiI	CCNNNNNNNGG	2 cut(s)	283, 2462
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	5 cut(s)	278, 421, 991, 1226, 2329
AjuI	GAANNNNNNNTTGG	2 cut(s)	2795, 2827
AleI	CACNNNNGTG	1 cut(s)	1345
Alw21I	GWGCWC	2 cut(s)	653, 2867
Alw26I	GTCTC	8 cut(s)	99, 148, 197, 719, 1240, 1784, 1821, 2835
AlwI	GGATC	2 cut(s)	1548, 2864
Aor51HI	AGCGCT	2 cut(s)	928, 2600
AoxI	GGCC	6 cut(s)	281, 340, 402, 424, 995, 1223
ApeKI	GCWGC	3 cut(s)	386, 1322, 1944
ApoI	RAATTY	3 cut(s)	2467, 2479, 2542
ArsI	GACNNNNNNTTYG	4 cut(s)	44, 76, 2300, 2332
Asp700I	GAANNNNTTC	2 cut(s)	1154, 1413
Asp718I	GGTACC	1 cut(s)	1244
AspLEI	GCGC	4 cut(s)	384, 386, 929, 2601
AspS9I	GGNCC	4 cut(s)	995, 1224, 2071, 2450
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	3 cut(s)	346, 922, 1507
AsuNHI	GCTAGC	1 cut(s)	821
AvaII	GGWCC	2 cut(s)	2071, 2450
BanI	GGYRCC	1 cut(s)	1244
BanII	GRGCYC	2 cut(s)	653, 2867
BarI	GAAGNNNNNNTAC	2 cut(s)	1507, 1539
BbrPI	CACGTG	1 cut(s)	1241
BbsI	GAAGAC	4 cut(s)	343, 1478, 1911, 2118
Bbv12I	GWGCWC	2 cut(s)	653, 2867
BbvI	GCAGC	3 cut(s)	373, 1309, 1956
BccI	CCATC	6 cut(s)	1980, 2356, 2577, 2676, 2758, 2882
BceAI	ACGGC	3 cut(s)	355, 560, 2364
BciT130I	CCWGG	5 cut(s)	280, 423, 993, 1228, 2331
BciVI	GTATCC	1 cut(s)	1516
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	8 cut(s)	99, 148, 197, 719, 1240, 1784, 1821, 2835
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	6 cut(s)	189, 822, 1692, 2400, 2421, 2436
BfmI	CTRYAG	3 cut(s)	524, 1764, 2304
BfoI	RGCGCY	2 cut(s)	930, 2602
BfuAI	ACCTGC	2 cut(s)	517, 1771
BfuI	GTATCC	1 cut(s)	1516
BglII	AGATCT	2 cut(s)	2023, 2402
BisI	GCNGC	6 cut(s)	119, 318, 387, 1223, 1323, 1945
BlsI	GCNGC	6 cut(s)	120, 319, 388, 1224, 1324, 1946
BmcAI	AGTACT	1 cut(s)	1378
Bme1390I	CCNGG	6 cut(s)	280, 358, 423, 993, 1228, 2331
Bme18I	GGWCC	2 cut(s)	2071, 2450
BmgT120I	GGNCC	4 cut(s)	995, 1224, 2071, 2450
BmiI	GGNNCC	4 cut(s)	1246, 1702, 2452, 2640
BmrFI	CCNGG	6 cut(s)	280, 358, 423, 993, 1228, 2331
BmrI	ACTGGG	2 cut(s)	1498, 2616
BmsI	GCATC	2 cut(s)	1759, 2280
BmtI	GCTAGC	1 cut(s)	825
BmuI	ACTGGG	2 cut(s)	1498, 2616
BpiI	GAAGAC	4 cut(s)	343, 1478, 1911, 2118
BplI	GAGNNNNNCTC	2 cut(s)	926, 958
BpmI	CTGGAG	4 cut(s)	219, 915, 1674, 2115
Bpu10I	CCTNAGC	1 cut(s)	1696
BpuEI	CTTGAG	2 cut(s)	53, 1027
BpuMI	CCSGG	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	2089
BsaAI	YACGTR	1 cut(s)	1241
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	4 cut(s)	348, 573, 712, 2828
BsaI	GGTCTC	2 cut(s)	1240, 1821
BsaJI	CCNNGG	8 cut(s)	278, 337, 357, 631, 992, 1226, 1227, 2330
BsaWI	WCCGGW	1 cut(s)	720
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 308, 2807, 2837
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 2462
Bse118I	RCCGGY	2 cut(s)	320, 2068
Bse3DI	GCAATG	1 cut(s)	1099
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	5 cut(s)	280, 423, 993, 1228, 2331
BseCI	ATCGAT	1 cut(s)	2089
BseDI	CCNNGG	8 cut(s)	278, 337, 357, 631, 992, 1226, 1227, 2330
BseGI	GGATG	3 cut(s)	618, 2569, 2893
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	2 cut(s)	283, 2462
BseMI	GCAATG	1 cut(s)	1099
BseMII	CTCAG	7 cut(s)	1177, 1379, 1710, 1779, 1971, 2714, 2714
BsePI	GCGCGC	1 cut(s)	382
BseRI	GAGGAG	9 cut(s)	87, 90, 93, 167, 170, 1501, 1820, 2678, 2833
BseXI	GCAGC	3 cut(s)	373, 1309, 1956
BseYI	CCCAGC	1 cut(s)	2455
BsgI	GTGCAG	2 cut(s)	257, 977
Bsh1236I	CGCG	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	1612
BshFI	GGCC	6 cut(s)	283, 342, 404, 426, 997, 1225
BshNI	GGYRCC	1 cut(s)	1244
BshVI	ATCGAT	1 cut(s)	2089
BsiEI	CGRYCG	1 cut(s)	1612
BsiHKAI	GWGCWC	2 cut(s)	653, 2867
BsiSI	CCGG	6 cut(s)	284, 321, 357, 607, 721, 2069
BslFI	GGGAC	6 cut(s)	98, 115, 584, 964, 2257, 2347
BslI	CCNNNNNNNGG	2 cut(s)	283, 2462
BsmAI	GTCTC	8 cut(s)	99, 148, 197, 719, 1240, 1784, 1821, 2835
BsmBI	CGTCTC	2 cut(s)	719, 2835
BsmFI	GGGAC	6 cut(s)	98, 115, 584, 964, 2257, 2347
BsmI	GAATGC	4 cut(s)	664, 703, 1094, 1504
BsnI	GGCC	6 cut(s)	283, 342, 404, 426, 997, 1225
Bso31I	GGTCTC	2 cut(s)	1240, 1821
Bsp1286I	GDGCHC	2 cut(s)	653, 2867
Bsp143I	GATC	6 cut(s)	751, 1540, 2023, 2113, 2402, 2869
BspACI	CCGC	9 cut(s)	107, 116, 119, 318, 414, 1222, 1345, 2074, 2241
BspANI	GGCC	6 cut(s)	283, 342, 404, 426, 997, 1225
BspCNI	CTCAG	7 cut(s)	1176, 1378, 1709, 1780, 1972, 2713, 2715
BspDI	ATCGAT	1 cut(s)	2089
BspFNI	CGCG	1 cut(s)	384
BspHI	TCATGA	2 cut(s)	1056, 1144
BspLI	GGNNCC	4 cut(s)	1246, 1702, 2452, 2640
BspMAI	CTGCAG	2 cut(s)	528, 1768
BspMI	ACCTGC	2 cut(s)	517, 1771
BspOI	GCTAGC	1 cut(s)	825
BspPI	GGATC	2 cut(s)	1548, 2864
BspQI	GCTCTTC	1 cut(s)	708
BspT107I	GGYRCC	1 cut(s)	1244
BspTNI	GGTCTC	2 cut(s)	1240, 1821
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	1099
BsrFI	RCCGGY	2 cut(s)	320, 2068
BssAI	RCCGGY	2 cut(s)	320, 2068
BssECI	CCNNGG	8 cut(s)	278, 337, 357, 631, 992, 1226, 1227, 2330
BssHII	GCGCGC	1 cut(s)	382
BssMI	GATC	6 cut(s)	751, 1540, 2023, 2113, 2402, 2869
BssNI	GRCGYC	4 cut(s)	348, 573, 712, 2828
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	5 cut(s)	280, 423, 993, 1228, 2331
Bst6I	CTCTTC	5 cut(s)	73, 708, 1326, 2606, 2877
BstACI	GRCGYC	4 cut(s)	348, 573, 712, 2828
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	1241
BstC8I	GCNNGC	6 cut(s)	384, 823, 1220, 1316, 1320, 1942
BstDEI	CTNAG	9 cut(s)	1163, 1365, 1563, 1696, 1779, 1788, 1980, 2700, 2723
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	618, 2569, 2893
BstFNI	CGCG	1 cut(s)	384
BstH2I	RGCGCY	2 cut(s)	930, 2602
BstHHI	GCGC	4 cut(s)	384, 386, 929, 2601
BstKTI	GATC	6 cut(s)	754, 1543, 2026, 2116, 2405, 2872
BstMAI	GTCTC	8 cut(s)	99, 148, 197, 719, 1240, 1784, 1821, 2835
BstMBI	GATC	6 cut(s)	751, 1540, 2023, 2113, 2402, 2869
BstMCI	CGRYCG	1 cut(s)	1612
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 115, 280, 314, 478, 1047, 1089
BstNI	CCWGG	5 cut(s)	280, 423, 993, 1228, 2331
BstSCI	CCNGG	6 cut(s)	278, 356, 421, 991, 1226, 2329
BstSFI	CTRYAG	3 cut(s)	524, 1764, 2304
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	3 cut(s)	373, 1309, 1956
BstV2I	GAAGAC	4 cut(s)	343, 1478, 1911, 2118
BstX2I	RGATCY	3 cut(s)	1540, 2023, 2402
BstYI	RGATCY	3 cut(s)	1540, 2023, 2402
Bsu15I	ATCGAT	1 cut(s)	2089
BsuI	GTATCC	1 cut(s)	1516
BsuRI	GGCC	6 cut(s)	283, 342, 404, 426, 997, 1225
BsuTUI	ATCGAT	1 cut(s)	2089
BtgI	CCRYGG	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	618, 2569, 2893
BtsI	GCAGTG	3 cut(s)	1399, 1864, 2637
BtsIMutI	CAGTG	9 cut(s)	960, 1399, 1864, 2176, 2467, 2496, 2527, 2637, 2880
BveI	ACCTGC	2 cut(s)	517, 1771
Cac8I	GCNNGC	6 cut(s)	384, 823, 1220, 1316, 1320, 1942
CciI	TCATGA	2 cut(s)	1056, 1144
CfoI	GCGC	4 cut(s)	384, 386, 929, 2601
Cfr10I	RCCGGY	2 cut(s)	320, 2068
Cfr13I	GGNCC	4 cut(s)	995, 1224, 2071, 2450
ClaI	ATCGAT	1 cut(s)	2089
CpoI	CGGWCCG	1 cut(s)	2071
CseI	GACGC	4 cut(s)	62, 581, 701, 2344
Csp6I	GTAC	8 cut(s)	295, 1245, 1377, 1464, 1507, 2147, 2505, 2839
CspI	CGGWCCG	1 cut(s)	2071
CviQI	GTAC	8 cut(s)	295, 1245, 1377, 1464, 1507, 2147, 2505, 2839
DdeI	CTNAG	9 cut(s)	1163, 1365, 1563, 1696, 1779, 1788, 1980, 2700, 2723
DpnI	GATC	6 cut(s)	753, 1542, 2025, 2115, 2404, 2871
DpnII	GATC	6 cut(s)	751, 1540, 2023, 2113, 2402, 2869
DraIII	CACNNNGTG	2 cut(s)	379, 1574
EaeI	YGGCCR	2 cut(s)	281, 340
Eam1104I	CTCTTC	5 cut(s)	73, 708, 1326, 2606, 2877
EarI	CTCTTC	5 cut(s)	73, 708, 1326, 2606, 2877
EciI	GGCGGA	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	651, 2865
Eco130I	CCWWGG	1 cut(s)	631
Eco24I	GRGCYC	2 cut(s)	653, 2867
Eco31I	GGTCTC	2 cut(s)	1240, 1821
Eco32I	GATATC	2 cut(s)	1306, 1917
Eco47I	GGWCC	2 cut(s)	2071, 2450
Eco47III	AGCGCT	2 cut(s)	928, 2600
Eco53kI	GAGCTC	2 cut(s)	651, 2865
Eco57I	CTGAAG	4 cut(s)	825, 1365, 2430, 2514
Eco72I	CACGTG	1 cut(s)	1241
EcoICRI	GAGCTC	2 cut(s)	651, 2865
EcoRII	CCWGG	5 cut(s)	278, 421, 991, 1226, 2329
EcoRV	GATATC	2 cut(s)	1306, 1917
EcoT14I	CCWWGG	1 cut(s)	631
EcoT22I	ATGCAT	1 cut(s)	1205
EcoT38I	GRGCYC	2 cut(s)	653, 2867
ErhI	CCWWGG	1 cut(s)	631
Esp3I	CGTCTC	2 cut(s)	719, 2835
FaqI	GGGAC	6 cut(s)	98, 115, 584, 964, 2257, 2347
FauI	CCCGC	2 cut(s)	123, 2234
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	2307
Fnu4HI	GCNGC	6 cut(s)	119, 318, 387, 1223, 1323, 1945
FokI	GGATG	2 cut(s)	625, 2556
FriOI	GRGCYC	2 cut(s)	653, 2867
Fsp4HI	GCNGC	6 cut(s)	119, 318, 387, 1223, 1323, 1945
FspBI	CTAG	6 cut(s)	189, 822, 1692, 2400, 2421, 2436
GlaI	GCGC	4 cut(s)	383, 385, 928, 2600
GluI	GCNGC	6 cut(s)	119, 318, 387, 1223, 1323, 1945
GsaI	CCCAGC	1 cut(s)	2459
GsuI	CTGGAG	4 cut(s)	219, 915, 1674, 2115
HaeII	RGCGCY	2 cut(s)	930, 2602
HaeIII	GGCC	6 cut(s)	283, 342, 404, 426, 997, 1225
HapII	CCGG	6 cut(s)	284, 321, 357, 607, 721, 2069
HgaI	GACGC	4 cut(s)	62, 581, 701, 2344
HhaI	GCGC	4 cut(s)	384, 386, 929, 2601
Hin1I	GRCGYC	4 cut(s)	348, 573, 712, 2828
Hin6I	GCGC	4 cut(s)	382, 384, 927, 2599
HinP1I	GCGC	4 cut(s)	382, 384, 927, 2599
HincII	GTYRAC	4 cut(s)	2224, 2277, 2357, 2826
HindII	GTYRAC	4 cut(s)	2224, 2277, 2357, 2826
HindIII	AAGCTT	1 cut(s)	914
HpaII	CCGG	6 cut(s)	284, 321, 357, 607, 721, 2069
HphI	GGTGA	3 cut(s)	346, 922, 1507
Hpy166II	GTNNAC	6 cut(s)	337, 2224, 2277, 2308, 2357, 2826
Hpy188III	TCNNGA	8 cut(s)	32, 586, 932, 1057, 1145, 1418, 2400, 2735
Hpy8I	GTNNAC	6 cut(s)	337, 2224, 2277, 2308, 2357, 2826
Hpy99I	CGWCG	2 cut(s)	56, 350
HpyCH4IV	ACGT	3 cut(s)	348, 1240, 2828
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 115, 280, 314, 478, 1047, 1089
HpyF3I	CTNAG	9 cut(s)	1163, 1365, 1563, 1696, 1779, 1788, 1980, 2700, 2723
HpySE526I	ACGT	3 cut(s)	348, 1240, 2828
Hsp92I	GRCGYC	4 cut(s)	348, 573, 712, 2828
HspAI	GCGC	4 cut(s)	382, 384, 927, 2599
KpnI	GGTACC	1 cut(s)	1248
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	6 cut(s)	751, 1540, 2023, 2113, 2402, 2869
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	3 cut(s)	180, 934, 983
Lsp1109I	GCAGC	3 cut(s)	373, 1309, 1956
LweI	GCATC	2 cut(s)	1759, 2280
MaeI	CTAG	6 cut(s)	189, 822, 1692, 2400, 2421, 2436
MaeII	ACGT	3 cut(s)	348, 1240, 2828
MaeIII	GTNAC	5 cut(s)	1566, 1730, 1843, 2017, 2891
MalI	GATC	6 cut(s)	753, 1542, 2025, 2115, 2404, 2871
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	6 cut(s)	751, 1540, 2023, 2113, 2402, 2869
MflI	RGATCY	3 cut(s)	1540, 2023, 2402
MhlI	GDGCHC	2 cut(s)	653, 2867
MlyI	GAGTC	3 cut(s)	944, 1847, 2734
MmeI	TCCRAC	4 cut(s)	249, 764, 2306, 2793
Mph1103I	ATGCAT	1 cut(s)	1205
MroXI	GAANNNNTTC	2 cut(s)	1154, 1413
MslI	CAYNNNNRTG	1 cut(s)	1345
MspA1I	CMGCKG	2 cut(s)	1117, 1345
MspI	CCGG	6 cut(s)	284, 321, 357, 607, 721, 2069
MspR9I	CCNGG	6 cut(s)	280, 358, 423, 993, 1228, 2331
Mva1269I	GAATGC	4 cut(s)	664, 703, 1094, 1504
MvaI	CCWGG	5 cut(s)	280, 423, 993, 1228, 2331
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	7 cut(s)	62, 115, 280, 314, 478, 1047, 1089
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	6 cut(s)	751, 1540, 2023, 2113, 2402, 2869
NheI	GCTAGC	1 cut(s)	821
NlaIV	GGNNCC	4 cut(s)	1246, 1702, 2452, 2640
NmuCI	GTSAC	2 cut(s)	1566, 1843
NsiI	ATGCAT	1 cut(s)	1205
OliI	CACNNNNGTG	1 cut(s)	1345
PagI	TCATGA	2 cut(s)	1056, 1144
PasI	CCCWGGG	1 cut(s)	1227
PauI	GCGCGC	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 2570
PctI	GAATGC	4 cut(s)	664, 703, 1094, 1504
PdmI	GAANNNNTTC	2 cut(s)	1154, 1413
PfeI	GAWTC	9 cut(s)	599, 878, 961, 1272, 1628, 2086, 2561, 2731, 2779
PflMI	CCANNNNNTGG	1 cut(s)	2462
PkrI	GCNGC	6 cut(s)	120, 319, 388, 1224, 1324, 1946
PleI	GAGTC	3 cut(s)	943, 1846, 2733
PmaCI	CACGTG	1 cut(s)	1241
PmlI	CACGTG	1 cut(s)	1241
PpsI	GAGTC	3 cut(s)	943, 1846, 2733
Ppu21I	YACGTR	1 cut(s)	1241
Psp124BI	GAGCTC	2 cut(s)	653, 2867
Psp6I	CCWGG	5 cut(s)	278, 421, 991, 1226, 2329
PspCI	CACGTG	1 cut(s)	1241
PspFI	CCCAGC	1 cut(s)	2455
PspGI	CCWGG	5 cut(s)	278, 421, 991, 1226, 2329
PspN4I	GGNNCC	4 cut(s)	1246, 1702, 2452, 2640
PspPI	GGNCC	4 cut(s)	995, 1224, 2071, 2450
PstI	CTGCAG	2 cut(s)	528, 1768
PsuI	RGATCY	3 cut(s)	1540, 2023, 2402
PteI	GCGCGC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	1117
RsaI	GTAC	8 cut(s)	296, 1246, 1378, 1465, 1508, 2148, 2506, 2840
RsaNI	GTAC	8 cut(s)	295, 1245, 1377, 1464, 1507, 2147, 2505, 2839
RseI	CAYNNNNRTG	1 cut(s)	1345
Rsr2I	CGGWCCG	1 cut(s)	2071
RsrII	CGGWCCG	1 cut(s)	2071
SacI	GAGCTC	2 cut(s)	653, 2867
SapI	GCTCTTC	1 cut(s)	708
SatI	GCNGC	6 cut(s)	119, 318, 387, 1223, 1323, 1945
Sau3AI	GATC	6 cut(s)	751, 1540, 2023, 2113, 2402, 2869
Sau96I	GGNCC	4 cut(s)	995, 1224, 2071, 2450
SbfI	CCTGCAGG	1 cut(s)	528
ScaI	AGTACT	1 cut(s)	1378
SchI	GAGTC	3 cut(s)	944, 1847, 2734
ScrFI	CCNGG	6 cut(s)	280, 358, 423, 993, 1228, 2331
SdaI	CCTGCAGG	1 cut(s)	528
SduI	GDGCHC	2 cut(s)	653, 2867
SfaNI	GCATC	2 cut(s)	1759, 2280
SfcI	CTRYAG	3 cut(s)	524, 1764, 2304
SinI	GGWCC	2 cut(s)	2071, 2450
SmiMI	CAYNNNNRTG	1 cut(s)	1345
SmlI	CTYRAG	2 cut(s)	32, 1042
SmoI	CTYRAG	2 cut(s)	32, 1042
SpeI	ACTAGT	1 cut(s)	188
Sse8387I	CCTGCAGG	1 cut(s)	528
SsiI	CCGC	9 cut(s)	107, 116, 119, 318, 414, 1222, 1345, 2074, 2241
SspMI	CTAG	6 cut(s)	189, 822, 1692, 2400, 2421, 2436
SstI	GAGCTC	2 cut(s)	653, 2867
StyD4I	CCNGG	6 cut(s)	278, 356, 421, 991, 1226, 2329
StyI	CCWWGG	1 cut(s)	631
TaiI	ACGT	3 cut(s)	351, 1243, 2831
TaqI	TCGA	4 cut(s)	768, 1275, 1583, 2089
TaqII	GACCGA	1 cut(s)	1598
TatI	WGTACW	3 cut(s)	1376, 1463, 2838
TauI	GCSGC	3 cut(s)	121, 320, 1225
TfiI	GAWTC	9 cut(s)	599, 878, 961, 1272, 1628, 2086, 2561, 2731, 2779
TscAI	CASTG	9 cut(s)	960, 1399, 1864, 2176, 2467, 2503, 2527, 2637, 2880
TseFI	GTSAC	2 cut(s)	1566, 1843
TseI	GCWGC	3 cut(s)	386, 1322, 1944
Tsp45I	GTSAC	2 cut(s)	1566, 1843
TspGWI	ACGGA	4 cut(s)	878, 1741, 2522, 2562
TspRI	CASTG	9 cut(s)	960, 1399, 1864, 2176, 2467, 2503, 2527, 2637, 2880
Van91I	CCANNNNNTGG	1 cut(s)	2462
VpaK11BI	GGWCC	2 cut(s)	2071, 2450
XapI	RAATTY	3 cut(s)	2467, 2479, 2542
XbaI	TCTAGA	1 cut(s)	2399
XmiI	GTMKAC	1 cut(s)	2307
XmnI	GAANNNNTTC	2 cut(s)	1154, 1413
XspI	CTAG	6 cut(s)	189, 822, 1692, 2400, 2421, 2436
ZraI	GACGTC	2 cut(s)	349, 2829
ZrmI	AGTACT	1 cut(s)	1378
Zsp2I	ATGCAT	1 cut(s)	1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.