Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010239

Physical Location & Seq

Genomic Coordinates Reverse (-)

43586258 .. 43589558

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG360800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGGGTGGTGCTAGCAACAGGTTCTTGAGCCTACTCTCCACCACGACGCACCCTTTGCCTCTTCATCTCCACCACCGCTTCCCTTGTCTCCTCCTCCTCCGCCTGTCCCGCCGCTCGTCCAGTCCCCAACTCTTGTCTCGCCTTCATCATTCTACTCTCTCTTATCGCTCCTCCTCTTTTACTAGTCTCAAATCCTCCCATCATTTCCATTTCCACTCCAACGCCTCTCCAGTTTCCCCTGCCTACCCTTCTGCCGACCCACCCCTGCACCCCTGGCCGGAGTGGTCGTACCTCCTTAATGCTCTCTCTGCCGCCGGTTATGATGAAGTCCACGGCCACGACGTCTTCACCGGGGATTTGCCCGACCACTTTGTGCGCGCTGCCCGTGTTTGTTTGGCCTTCGCCACCGCACGACCTGGCCTTTTGAGGTTGCTTTCTCGGAGAGATTTAGAGGCTGTGGTGGAGAATGGGACGCCGTTTCTGTTCCAGAATGGCGATGATTCAAGCCGGAGGATGACCTCATTTCTCGCCCAAGGCTCTACCAATGCCTTCGATACTGATAAAGCACAAACGGTTGATTTGATGAGATTTATATTGAGTTATGCTAGCACTCCTGTTTTTTCTTCAGAGCGAAACAACCTCTACAATAGAGAACTTGTTGAATCATCTGTCCGTAATCTGTTGAGAGAAATGGCGAAGCTTTGTTATAGCGCTCCAGAGTCTAACTCTTTTGGGACAGTGCAGAATCAAAGTTCTAATAATCATGGAGCAACTCCTGGGCCTTTTGGCAAAACTATTGAAATGAAAAGAGGCGACTGGATTTGCTCAAGGTGCAATTTCATGAACTTCGCAAAAAACATGAAATGCCTTGAATGCAATGAGGCAAAGCCACACAGACAGCTGACTGGCAGAGAGTGGGAGTGTCCACAATGTGATTTTTTTAACTACGGGAGAAACATGGTATGCTTGAGGTGTGATTGCAAGCGGCCCGGGGAGGTCTCATGTGGTACCACTAAAACTAATTTAGATATTGGATTCGACAATGGAGATGATACAAATAAAGCTGATATCAATAGCAGGCTGGCTGCCAATGAAGAGAAGGCACAGCGGTGGTTTAGTAAGATTTCTCAGTTAGACAGTACTTCAGACATGAGCAGTGCAATATCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGAGTAAATAGATTTGTTGTGAGTACAAGGAAGACACCATTAGAGAGGAGGCTGGTGAATGCCCAGTACCAAAGAAGTTTGGATACTGATGAAATCAAGGATCTCCAAAAGGGGAGTGCAACTAAGTCACTTGGTGCTACATCGAGCCAGACTTTAGATACTATTCTCGGTCGTTCATCTGTTTCTGAATCAAATACTACCAATACCAATGCTGGAGAACATGGTAAAACTGATAACTCCTCTTTTATCTCTAGCTCAGGTTCCACACAGTATCAACAGCCCAGACGGAGTAACTCCAATTATGCCCCATTTGTGCCATTACCTGCAGATGCGTTTGCTAAGAAACCTGACACTTCATATATGGAGGAGAGTGGGAAGTTAGTGAGAGACCAAAATGAGTCTGTCACTTTGAAGGGCAGTGAATTGGAAGGTGTTTCTGGGAACAATCAATCTGGTAAATCAGAAGACAGTCTGATATCTGCAAAGTCTATGAAACAAGCTGGCAGCAGGAATGAAGAAAAGGAACAAGCTGAAAAATCTGAGAGATGGTTTAAGAGGGTTGCAGAGTTGCATGATGTTACAGATCTTGCAAGTGCAATTTCCGATGAGGACTTCCCTGAAATCATGCCGGTCCGCAAAGGAGAGAATCGATTTATGGTCAGCAAGAAGAAAGATCGTTCTTCGTCTTCTCCAGCATACAAGAGAGTACCAGCTATGGAACAACCTAACAGTGCCAACTATGTTCCCTTCGTTCCCTTCCCACCTGACTACTTTGCTAAAGTTGACAATCCACAGACAAGCGGGACAGCTTTGGATAACAAGACTGGTGTTAAGTCAACTCCAACTATGATGCCAGAGAACCCTGTAGACAAATCGTTTGACACAAGACCTGGGACGCTGAATACTGGTCATAGTCAACAGATGGAAAGTCAGCAAAGCCGTGTTGCCAACTTGAAATCTAGATCTTCTGAAGATAATCCTAGAAAGAAATGGACTAGCTCTGTTAATGGACCCCCAGCCAGTGGAAATTCTGCCTTGAATTTTGCTAATACTACCACTGATAGTGCGGACAGATTGAACAGTGGAACTTCAGGGAAAGAGAATTTTGATGAGTTAATGGATTCGCACCATCCGTCCAATGAACAGAACATTAGACAGCGCTGGACTGGGAAGAGTTTGGAGGGGTCAGCAGTGAAGGAACCAAATCCTTTAGATATGTCAGAGGAGGCAAAGGCAGAGAGATGGTTTAAGCGTGTTGCTCAGATTAAAGACATATCAGAGCTGAGTCAGATTCCTGATGAAGATTTCCCATCAATAATGCCAATGCGTAAAGGAGTGAATCGGTTTGTGGTCAGCAAGAGGAAAACACCGTTGGAGAGGAGGTTGACGTCTCCACAGTACAGAAAAAGCCTTCCTGTTGTGAGCTCTGATCCAGTGAAGGAAGATGATGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L24e zf-RanBP

Protein Analysis

886

Amino Acids

98.7

Weight (kDa)

8.38

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	270 - 292	2.2e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17790
fragaria_vesca	FvH4_2g05470
malus_domestica	MD12G1012900.v1.1 MD14G1010700.v1.1
prunus_persica	Prupe.7G017200_v2.0.a1
pyrus_communis	pycom05g28400 pycom12g01030 pycom14g00910
rosa_chinensis	RchiOBHm_Chr3g0495901
rosa_laevigata	RLG00000022581
rosa_multiflora	Rmu_co8376015.1_g000001 Rmu_co8410629.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389920
rosa_rugosa	Rorug03G0276900 Rorug03G0277000 Rorug03G0277100
rosa_samantha	Rh3AG324800 Rh3BG360800 Rh3CG357100 Rh3DG359900
rosa_wichuraiana	Rw3G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	345, 2594
Acc36I	ACCTGC	1 cut(s)	1534
Acc65I	GGTACC	1 cut(s)	1007
AccB1I	GGYRCC	1 cut(s)	1007
AccB7I	CCANNNNNTGG	1 cut(s)	2225
AccBSI	CCGCTC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	2070
AccII	CGCG	1 cut(s)	378
AclWI	GGATC	2 cut(s)	1311, 2627
AcoI	YGGCCR	2 cut(s)	275, 334
AcsI	RAATTY	3 cut(s)	2230, 2242, 2305
AcuI	CTGAAG	4 cut(s)	609, 1128, 2193, 2277
AcyI	GRCGYC	3 cut(s)	342, 473, 2591
AdeI	CACNNNGTG	3 cut(s)	373, 932, 1337
AfaI	GTAC	7 cut(s)	290, 1009, 1141, 1228, 1271, 1911, 2603
AfeI	AGCGCT	2 cut(s)	712, 2363
AfiI	CCNNNNNNNGG	2 cut(s)	277, 2225
AgsI	TTSAA	8 cut(s)	504, 662, 800, 872, 1615, 2158, 2242, 2281
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	4 cut(s)	272, 415, 775, 2092
AjuI	GAANNNNNNNTTGG	2 cut(s)	2558, 2590
AleI	CACNNNNGTG	1 cut(s)	1108
Alw21I	GWGCWC	1 cut(s)	2630
Alw26I	GTCTC	6 cut(s)	92, 141, 191, 1003, 1584, 2598
AlwI	GGATC	2 cut(s)	1311, 2627
Ama87I	CYCGRG	1 cut(s)	989
Aor51HI	AGCGCT	2 cut(s)	712, 2363
AoxI	GGCC	6 cut(s)	275, 334, 396, 418, 779, 986
ApeKI	GCWGC	3 cut(s)	380, 1085, 1707
ApoI	RAATTY	3 cut(s)	2230, 2242, 2305
ArsI	GACNNNNNNTTYG	4 cut(s)	37, 69, 2063, 2095
Asp700I	GAANNNNTTC	1 cut(s)	1176
Asp718I	GGTACC	1 cut(s)	1007
AspLEI	GCGC	4 cut(s)	378, 380, 713, 2364
AspS9I	GGNCC	4 cut(s)	779, 987, 1834, 2213
AsuC2I	CCSGG	3 cut(s)	352, 990, 991
AsuHPI	GGTGA	2 cut(s)	340, 1270
AsuNHI	GCTAGC	2 cut(s)	11, 605
AvaI	CYCGRG	1 cut(s)	989
AvaII	GGWCC	2 cut(s)	1834, 2213
BanI	GGYRCC	1 cut(s)	1007
BanII	GRGCYC	1 cut(s)	2630
BarI	GAAGNNNNNNTAC	2 cut(s)	1270, 1302
BbsI	GAAGAC	4 cut(s)	337, 1241, 1674, 1881
Bbv12I	GWGCWC	1 cut(s)	2630
BbvI	GCAGC	3 cut(s)	367, 1072, 1719
BccI	CCATC	7 cut(s)	207, 1743, 2119, 2340, 2439, 2521, 2645
BceAI	ACGGC	3 cut(s)	349, 460, 2127
BciT130I	CCWGG	4 cut(s)	274, 417, 777, 2094
BciVI	GTATCC	1 cut(s)	1279
BcnI	CCSGG	3 cut(s)	352, 990, 991
BcoDI	GTCTC	6 cut(s)	92, 141, 191, 1003, 1584, 2598
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	7 cut(s)	12, 183, 606, 1455, 2163, 2184, 2199
BfmI	CTRYAG	2 cut(s)	1527, 2067
BfoI	RGCGCY	2 cut(s)	714, 2365
BfuAI	ACCTGC	1 cut(s)	1534
BfuI	GTATCC	1 cut(s)	1279
BglII	AGATCT	2 cut(s)	1786, 2165
BisI	GCNGC	6 cut(s)	112, 312, 381, 986, 1086, 1708
BlsI	GCNGC	6 cut(s)	113, 313, 382, 987, 1087, 1709
BmcAI	AGTACT	1 cut(s)	1141
Bme1390I	CCNGG	7 cut(s)	274, 352, 417, 777, 990, 991, 2094
Bme18I	GGWCC	2 cut(s)	1834, 2213
BmeT110I	CYCGRG	1 cut(s)	989
BmgT120I	GGNCC	4 cut(s)	779, 987, 1834, 2213
BmiI	GGNNCC	4 cut(s)	1009, 1465, 2215, 2403
BmrFI	CCNGG	7 cut(s)	274, 352, 417, 777, 990, 991, 2094
BmrI	ACTGGG	2 cut(s)	1261, 2379
BmsI	GCATC	2 cut(s)	1522, 2043
BmtI	GCTAGC	2 cut(s)	15, 609
BmuI	ACTGGG	2 cut(s)	1261, 2379
BpiI	GAAGAC	4 cut(s)	337, 1241, 1674, 1881
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	4 cut(s)	213, 699, 1437, 1878
Bpu10I	CCTNAGC	1 cut(s)	1459
BpuEI	CTTGAG	3 cut(s)	46, 811, 988
BpuMI	CCSGG	3 cut(s)	352, 990, 991
Bsa29I	ATCGAT	1 cut(s)	1852
BsaHI	GRCGYC	3 cut(s)	342, 473, 2591
BsaI	GGTCTC	2 cut(s)	1003, 1584
BsaJI	CCNNGG	8 cut(s)	272, 331, 351, 532, 776, 989, 990, 2093
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 2570, 2600
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 2225
Bse118I	RCCGGY	2 cut(s)	314, 1831
Bse3DI	GCAATG	1 cut(s)	883
BseBI	CCWGG	4 cut(s)	274, 417, 777, 2094
BseCI	ATCGAT	1 cut(s)	1852
BseDI	CCNNGG	8 cut(s)	272, 331, 351, 532, 776, 989, 990, 2093
BseGI	GGATG	2 cut(s)	519, 2332
BseLI	CCNNNNNNNGG	2 cut(s)	277, 2225
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	5 cut(s)	1142, 1473, 1734, 2477, 2477
BsePI	GCGCGC	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	367, 1072, 1719
BseYI	CCCAGC	1 cut(s)	2218
BsgI	GTGCAG	2 cut(s)	251, 761
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	1375
BshFI	GGCC	6 cut(s)	277, 336, 398, 420, 781, 988
BshNI	GGYRCC	1 cut(s)	1007
BshVI	ATCGAT	1 cut(s)	1852
BsiEI	CGRYCG	1 cut(s)	1375
BsiHKAI	GWGCWC	1 cut(s)	2630
BsiHKCI	CYCGRG	1 cut(s)	989
BsiSI	CCGG	6 cut(s)	278, 315, 351, 508, 990, 1832
BslFI	GGGAC	6 cut(s)	91, 108, 484, 748, 2020, 2110
BslI	CCNNNNNNNGG	2 cut(s)	277, 2225
BsmAI	GTCTC	6 cut(s)	92, 141, 191, 1003, 1584, 2598
BsmBI	CGTCTC	1 cut(s)	2598
BsmFI	GGGAC	6 cut(s)	91, 108, 484, 748, 2020, 2110
BsmI	GAATGC	2 cut(s)	878, 1267
BsnI	GGCC	6 cut(s)	277, 336, 398, 420, 781, 988
Bso31I	GGTCTC	2 cut(s)	1003, 1584
BsoBI	CYCGRG	1 cut(s)	989
Bsp1286I	GDGCHC	1 cut(s)	2630
Bsp143I	GATC	5 cut(s)	1303, 1786, 1876, 2165, 2632
BspANI	GGCC	6 cut(s)	277, 336, 398, 420, 781, 988
BspCNI	CTCAG	5 cut(s)	1141, 1472, 1735, 2476, 2478
BspDI	ATCGAT	1 cut(s)	1852
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	840
BspLI	GGNNCC	4 cut(s)	1009, 1465, 2215, 2403
BspMAI	CTGCAG	1 cut(s)	1531
BspMI	ACCTGC	1 cut(s)	1534
BspOI	GCTAGC	2 cut(s)	15, 609
BspPI	GGATC	2 cut(s)	1311, 2627
BspT107I	GGYRCC	1 cut(s)	1007
BspTNI	GGTCTC	2 cut(s)	1003, 1584
BsrBI	CCGCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	883
BsrFI	RCCGGY	2 cut(s)	314, 1831
BssAI	RCCGGY	2 cut(s)	314, 1831
BssECI	CCNNGG	8 cut(s)	272, 331, 351, 532, 776, 989, 990, 2093
BssHII	GCGCGC	1 cut(s)	376
BssMI	GATC	5 cut(s)	1303, 1786, 1876, 2165, 2632
BssNI	GRCGYC	3 cut(s)	342, 473, 2591
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	4 cut(s)	274, 417, 777, 2094
Bst4CI	ACNGT	9 cut(s)	574, 739, 1139, 1473, 1673, 1934, 2285, 2574, 2601
Bst6I	CTCTTC	3 cut(s)	66, 1089, 2369
BstACI	GRCGYC	3 cut(s)	342, 473, 2591
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstC8I	GCNNGC	7 cut(s)	13, 378, 607, 983, 1079, 1083, 1705
BstDEI	CTNAG	7 cut(s)	1128, 1326, 1459, 1542, 1743, 2463, 2486
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	519, 2332
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	2 cut(s)	714, 2365
BstHHI	GCGC	4 cut(s)	378, 380, 713, 2364
BstKTI	GATC	5 cut(s)	1306, 1789, 1879, 2168, 2635
BstMAI	GTCTC	6 cut(s)	92, 141, 191, 1003, 1584, 2598
BstMBI	GATC	5 cut(s)	1303, 1786, 1876, 2165, 2632
BstMCI	CGRYCG	1 cut(s)	1375
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 108, 274, 308, 831, 873
BstNI	CCWGG	4 cut(s)	274, 417, 777, 2094
BstSCI	CCNGG	7 cut(s)	272, 350, 415, 775, 988, 989, 2092
BstSFI	CTRYAG	2 cut(s)	1527, 2067
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	367, 1072, 1719
BstV2I	GAAGAC	4 cut(s)	337, 1241, 1674, 1881
BstX2I	RGATCY	3 cut(s)	1303, 1786, 2165
BstYI	RGATCY	3 cut(s)	1303, 1786, 2165
Bsu15I	ATCGAT	1 cut(s)	1852
BsuI	GTATCC	1 cut(s)	1279
BsuRI	GGCC	6 cut(s)	277, 336, 398, 420, 781, 988
BsuTUI	ATCGAT	1 cut(s)	1852
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	519, 2332
BtsI	GCAGTG	3 cut(s)	1162, 1627, 2400
BtsIMutI	CAGTG	9 cut(s)	744, 1162, 1627, 1939, 2230, 2259, 2290, 2400, 2643
BveI	ACCTGC	1 cut(s)	1534
Cac8I	GCNNGC	7 cut(s)	13, 378, 607, 983, 1079, 1083, 1705
CciI	TCATGA	1 cut(s)	840
CfoI	GCGC	4 cut(s)	378, 380, 713, 2364
Cfr10I	RCCGGY	2 cut(s)	314, 1831
Cfr13I	GGNCC	4 cut(s)	779, 987, 1834, 2213
Cfr9I	CCCGGG	1 cut(s)	989
ClaI	ATCGAT	1 cut(s)	1852
CpoI	CGGWCCG	1 cut(s)	1834
CseI	GACGC	3 cut(s)	55, 481, 2107
Csp6I	GTAC	7 cut(s)	289, 1008, 1140, 1227, 1270, 1910, 2602
CspI	CGGWCCG	1 cut(s)	1834
CviAII	CATG	9 cut(s)	764, 841, 859, 958, 1002, 1150, 1424, 1775, 1828
CviQI	GTAC	7 cut(s)	289, 1008, 1140, 1227, 1270, 1910, 2602
DdeI	CTNAG	7 cut(s)	1128, 1326, 1459, 1542, 1743, 2463, 2486
DpnI	GATC	5 cut(s)	1305, 1788, 1878, 2167, 2634
DpnII	GATC	5 cut(s)	1303, 1786, 1876, 2165, 2632
DraIII	CACNNNGTG	3 cut(s)	373, 932, 1337
EaeI	YGGCCR	2 cut(s)	275, 334
Eam1104I	CTCTTC	3 cut(s)	66, 1089, 2369
EarI	CTCTTC	3 cut(s)	66, 1089, 2369
EciI	GGCGGA	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	2628
Eco130I	CCWWGG	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	2630
Eco31I	GGTCTC	2 cut(s)	1003, 1584
Eco32I	GATATC	2 cut(s)	1069, 1680
Eco47I	GGWCC	2 cut(s)	1834, 2213
Eco47III	AGCGCT	2 cut(s)	712, 2363
Eco53kI	GAGCTC	1 cut(s)	2628
Eco57I	CTGAAG	4 cut(s)	609, 1128, 2193, 2277
Eco88I	CYCGRG	1 cut(s)	989
EcoICRI	GAGCTC	1 cut(s)	2628
EcoRII	CCWGG	4 cut(s)	272, 415, 775, 2092
EcoRV	GATATC	2 cut(s)	1069, 1680
EcoT14I	CCWWGG	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	2630
ErhI	CCWWGG	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	2598
FaeI	CATG	9 cut(s)	767, 844, 862, 961, 1005, 1153, 1427, 1778, 1831
FaqI	GGGAC	6 cut(s)	91, 108, 484, 748, 2020, 2110
FatI	CATG	9 cut(s)	763, 840, 858, 957, 1001, 1149, 1423, 1774, 1827
FauI	CCCGC	2 cut(s)	116, 1997
FblI	GTMKAC	1 cut(s)	2070
Fnu4HI	GCNGC	6 cut(s)	112, 312, 381, 986, 1086, 1708
FokI	GGATG	2 cut(s)	526, 2319
FriOI	GRGCYC	1 cut(s)	2630
Fsp4HI	GCNGC	6 cut(s)	112, 312, 381, 986, 1086, 1708
FspBI	CTAG	7 cut(s)	12, 183, 606, 1455, 2163, 2184, 2199
GlaI	GCGC	4 cut(s)	377, 379, 712, 2363
GluI	GCNGC	6 cut(s)	112, 312, 381, 986, 1086, 1708
GsaI	CCCAGC	1 cut(s)	2222
GsuI	CTGGAG	4 cut(s)	213, 699, 1437, 1878
HaeII	RGCGCY	2 cut(s)	714, 2365
HaeIII	GGCC	6 cut(s)	277, 336, 398, 420, 781, 988
HapII	CCGG	6 cut(s)	278, 315, 351, 508, 990, 1832
HgaI	GACGC	3 cut(s)	55, 481, 2107
HhaI	GCGC	4 cut(s)	378, 380, 713, 2364
Hin1I	GRCGYC	3 cut(s)	342, 473, 2591
Hin1II	CATG	9 cut(s)	767, 844, 862, 961, 1005, 1153, 1427, 1778, 1831
Hin6I	GCGC	4 cut(s)	376, 378, 711, 2362
HinP1I	GCGC	4 cut(s)	376, 378, 711, 2362
HincII	GTYRAC	4 cut(s)	1987, 2040, 2120, 2589
HindII	GTYRAC	4 cut(s)	1987, 2040, 2120, 2589
HindIII	AAGCTT	1 cut(s)	698
HpaII	CCGG	6 cut(s)	278, 315, 351, 508, 990, 1832
HphI	GGTGA	2 cut(s)	340, 1270
Hpy166II	GTNNAC	7 cut(s)	331, 926, 1987, 2040, 2071, 2120, 2589
Hpy188III	TCNNGA	7 cut(s)	25, 487, 716, 841, 1181, 2163, 2498
Hpy8I	GTNNAC	7 cut(s)	331, 926, 1987, 2040, 2071, 2120, 2589
Hpy99I	CGWCG	2 cut(s)	49, 344
HpyCH4III	ACNGT	9 cut(s)	574, 739, 1139, 1473, 1673, 1934, 2285, 2574, 2601
HpyCH4IV	ACGT	2 cut(s)	342, 2591
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 108, 274, 308, 831, 873
HpyF3I	CTNAG	7 cut(s)	1128, 1326, 1459, 1542, 1743, 2463, 2486
HpySE526I	ACGT	2 cut(s)	342, 2591
Hsp92I	GRCGYC	3 cut(s)	342, 473, 2591
Hsp92II	CATG	9 cut(s)	767, 844, 862, 961, 1005, 1153, 1427, 1778, 1831
HspAI	GCGC	4 cut(s)	376, 378, 711, 2362
KpnI	GGTACC	1 cut(s)	1011
Kzo9I	GATC	5 cut(s)	1303, 1786, 1876, 2165, 2632
LmnI	GCTCC	3 cut(s)	173, 718, 767
Lsp1109I	GCAGC	3 cut(s)	367, 1072, 1719
LweI	GCATC	2 cut(s)	1522, 2043
MaeI	CTAG	7 cut(s)	12, 183, 606, 1455, 2163, 2184, 2199
MaeII	ACGT	2 cut(s)	342, 2591
MaeIII	GTNAC	5 cut(s)	1329, 1493, 1606, 1780, 2654
MalI	GATC	5 cut(s)	1305, 1788, 1878, 2167, 2634
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	5 cut(s)	1303, 1786, 1876, 2165, 2632
MflI	RGATCY	3 cut(s)	1303, 1786, 2165
MhlI	GDGCHC	1 cut(s)	2630
MluCI	AATT	8 cut(s)	835, 1021, 1501, 1625, 1800, 2230, 2242, 2305
MlyI	GAGTC	3 cut(s)	728, 1610, 2497
MmeI	TCCRAC	3 cut(s)	243, 2069, 2556
MroXI	GAANNNNTTC	1 cut(s)	1176
MseI	TTAA	8 cut(s)	297, 942, 1755, 2034, 2208, 2318, 2451, 2469
MslI	CAYNNNNRTG	1 cut(s)	1108
MspA1I	CMGCKG	2 cut(s)	901, 1108
MspI	CCGG	6 cut(s)	278, 315, 351, 508, 990, 1832
MspR9I	CCNGG	7 cut(s)	274, 352, 417, 777, 990, 991, 2094
Mva1269I	GAATGC	2 cut(s)	878, 1267
MvaI	CCWGG	4 cut(s)	274, 417, 777, 2094
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	6 cut(s)	55, 108, 274, 308, 831, 873
NciI	CCSGG	3 cut(s)	352, 990, 991
NdeII	GATC	5 cut(s)	1303, 1786, 1876, 2165, 2632
NheI	GCTAGC	2 cut(s)	11, 605
NlaIII	CATG	9 cut(s)	767, 844, 862, 961, 1005, 1153, 1427, 1778, 1831
NlaIV	GGNNCC	4 cut(s)	1009, 1465, 2215, 2403
NmuCI	GTSAC	2 cut(s)	1329, 1606
OliI	CACNNNNGTG	1 cut(s)	1108
PagI	TCATGA	1 cut(s)	840
PauI	GCGCGC	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 2333
PctI	GAATGC	2 cut(s)	878, 1267
PdmI	GAANNNNTTC	1 cut(s)	1176
PfeI	GAWTC	9 cut(s)	500, 662, 745, 1035, 1391, 1849, 2324, 2494, 2542
PflMI	CCANNNNNTGG	1 cut(s)	2225
PkrI	GCNGC	6 cut(s)	113, 313, 382, 987, 1087, 1709
PleI	GAGTC	3 cut(s)	727, 1609, 2496
PpsI	GAGTC	3 cut(s)	727, 1609, 2496
Psp124BI	GAGCTC	1 cut(s)	2630
Psp6I	CCWGG	4 cut(s)	272, 415, 775, 2092
PspFI	CCCAGC	1 cut(s)	2218
PspGI	CCWGG	4 cut(s)	272, 415, 775, 2092
PspN4I	GGNNCC	4 cut(s)	1009, 1465, 2215, 2403
PspPI	GGNCC	4 cut(s)	779, 987, 1834, 2213
PstI	CTGCAG	1 cut(s)	1531
PsuI	RGATCY	3 cut(s)	1303, 1786, 2165
PteI	GCGCGC	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	901
RsaI	GTAC	7 cut(s)	290, 1009, 1141, 1228, 1271, 1911, 2603
RsaNI	GTAC	7 cut(s)	289, 1008, 1140, 1227, 1270, 1910, 2602
RseI	CAYNNNNRTG	1 cut(s)	1108
Rsr2I	CGGWCCG	1 cut(s)	1834
RsrII	CGGWCCG	1 cut(s)	1834
SacI	GAGCTC	1 cut(s)	2630
SaqAI	TTAA	8 cut(s)	297, 942, 1755, 2034, 2208, 2318, 2451, 2469
SatI	GCNGC	6 cut(s)	112, 312, 381, 986, 1086, 1708
Sau3AI	GATC	5 cut(s)	1303, 1786, 1876, 2165, 2632
Sau96I	GGNCC	4 cut(s)	779, 987, 1834, 2213
ScaI	AGTACT	1 cut(s)	1141
SchI	GAGTC	3 cut(s)	728, 1610, 2497
ScrFI	CCNGG	7 cut(s)	274, 352, 417, 777, 990, 991, 2094
SduI	GDGCHC	1 cut(s)	2630
SfaNI	GCATC	2 cut(s)	1522, 2043
SfcI	CTRYAG	2 cut(s)	1527, 2067
SinI	GGWCC	2 cut(s)	1834, 2213
SmaI	CCCGGG	1 cut(s)	991
SmiMI	CAYNNNNRTG	1 cut(s)	1108
SmlI	CTYRAG	3 cut(s)	25, 826, 967
SmoI	CTYRAG	3 cut(s)	25, 826, 967
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	8 cut(s)	835, 1021, 1501, 1625, 1800, 2230, 2242, 2305
SspMI	CTAG	7 cut(s)	12, 183, 606, 1455, 2163, 2184, 2199
SstI	GAGCTC	1 cut(s)	2630
StyD4I	CCNGG	7 cut(s)	272, 350, 415, 775, 988, 989, 2092
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	9 cut(s)	574, 739, 1139, 1473, 1673, 1934, 2285, 2574, 2601
TaiI	ACGT	2 cut(s)	345, 2594
TaqI	TCGA	4 cut(s)	552, 1038, 1346, 1852
TaqII	GACCGA	1 cut(s)	1361
TasI	AATT	8 cut(s)	835, 1021, 1501, 1625, 1800, 2230, 2242, 2305
TatI	WGTACW	3 cut(s)	1139, 1226, 2601
TauI	GCSGC	3 cut(s)	114, 314, 988
TfiI	GAWTC	9 cut(s)	500, 662, 745, 1035, 1391, 1849, 2324, 2494, 2542
Tru1I	TTAA	8 cut(s)	297, 942, 1755, 2034, 2208, 2318, 2451, 2469
Tru9I	TTAA	8 cut(s)	297, 942, 1755, 2034, 2208, 2318, 2451, 2469
TscAI	CASTG	9 cut(s)	744, 1162, 1627, 1939, 2230, 2266, 2290, 2400, 2643
TseFI	GTSAC	2 cut(s)	1329, 1606
TseI	GCWGC	3 cut(s)	380, 1085, 1707
Tsp45I	GTSAC	2 cut(s)	1329, 1606
TspGWI	ACGGA	3 cut(s)	662, 1504, 2325
TspMI	CCCGGG	1 cut(s)	989
TspRI	CASTG	9 cut(s)	744, 1162, 1627, 1939, 2230, 2266, 2290, 2400, 2643
Van91I	CCANNNNNTGG	1 cut(s)	2225
VpaK11BI	GGWCC	2 cut(s)	1834, 2213
XapI	RAATTY	3 cut(s)	2230, 2242, 2305
XbaI	TCTAGA	1 cut(s)	2162
XmaI	CCCGGG	1 cut(s)	989
XmiI	GTMKAC	1 cut(s)	2070
XmnI	GAANNNNTTC	1 cut(s)	1176
XspI	CTAG	7 cut(s)	12, 183, 606, 1455, 2163, 2184, 2199
ZraI	GACGTC	2 cut(s)	343, 2592
ZrmI	AGTACT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.