Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010239

Physical Location & Seq

Genomic Coordinates Reverse (-)

27399318 .. 27402146

Gene Structure 2829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0276900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGAACCAACTCAAGCAAATCCATGCCCACACACTCATCACCGGCCTAGCTCGTTTCACCTACATCACCAGCAAGCTCTTAGCCTTCTCCGCCTTATCGGAACACGGTGATTTACGCCACGCAGAGACTCTATTCAATCGAATTCCGGCACCCAATGTCTTTGATTTCAATTCCATGATCATGGGTTTCTTGAAAAACTCACATTCCAAAAAGGGTCTCTCTGTTTTTACCAAAATGAGAAGGATAGGCGCCGACCCAAATGCTCGAACTTTCACAGTTTTGGTTAAAGCTTGTGTTGGGGTGCCTTTGCTTGATCAGATATATGGTCAGATAATGAAGTTTGGACATGAGTGTGATGTTTATGTTACTAGCTCAGTTATTAGTGTTTACTGTAAATTGAGAGCTGTGGAATTTGCTCGGAGAGTGTTTGATGAAAGTTTGGATAGGAATGTGGTGTGTTGGACTAGTCTTGTTAGTGGGTATTGTGGCAATGGGTTGGTTGATGATGCCCGTGACCTGTTCGATAAAATGCCTGAGAGAAATGATGTGTCTTACAGTGCAATGGTTTCGGGTTATGTTCAGAATGCTTGTTTCAACAAAGCTATTGATTTGTTTCGTGATTTCAAGCGTCGTCGTGCGAATGTGAGGTTGAAAGAGTCTCTTTTGGTTAGTGTTCTTAATGCCTGTGCTTCTGTGGGTGCATTCGAGGAAGGGAAGTGGATTCAGATGTATTTGGACGACCATGGTTTTGAGTATGGACTTGAGCTCGGTACGGCAGGAATAGATTTTTATGCAAAATGTGGATTCATTAAAGATGCTAAAGAGATATTTGATAAGATGCTGCGTAAAGATGTAACTACTTGGAGTGCTATGATCATGGGATATGCTACTAATGGTGAGAATGATACAGGGCTTGAACTTTTTGCTGAAATGGAAAAGAAGGGACCTAAACCAAATGCTGTGACATTTGTTGGAGTTCTCACTGCATGTAATCACAAAACTCTGGTAAATGAAGCATGGCGAGCATTGGGACGTATGAGTAAAATTTATAGCATTGCTCCAGAGATTGAACACTATGGGTGCATGGTTGATCTCTTGGCCCGTGCTGGGCGAGTGAAAGAGGCAGAGATATTGATAAGAAGTATGGCAATGGAACCAGACGGAGCTATATGGGGGTCTTTACTTAACGGGTGTCTGATTCATGGCCATTTTGAGTTAGCCGGTAAGGTTGGGAAGCTTCTCATTCAATTAGAGCCTCAACATAGTGGAAGGTATGTTCTTTTAGCGAACATGTATGCCAAAATGGAAAACTGGGAGGATGTGTTGAGGCTAAGGAAAATGATGAAGGATAGAGAGATCCTGGCGGAAGTTAGTTATTGCAAAGGAAACAGACAAGTGGACATCCTGTGCTATTGTGTGTCCTCGAGTCATAAGCTTCTCCAAGGGACTGAGAATTATATAAAGCTTCATCAGATTGTGGATGAAACCGTCAAGAAGCTTCAAGCTGAAAAGTTGCTGCCTAATGGCACCATGAATTGGTGGGTAGGTGAGTGGGCGAGTACTGGTTCTGAGACAAACCGTAAACCAGCTCCACAGACTGAGGTGATTCGGATTGAGACATTCCATCATGCAAATAGGGAAAAAACAGAAGCCTGTGTACTCAAACTAGTATTGTGGCTTCATTATTTGGTCTCTCAAAGTAAGCCTGCATCCACTAGTGTGGGTATGCGGTCACCTGTTAAGTCCATAGCTACCAAAACCCTCCCAAAGACAAATGAGCAGCTCAAGGACATTCCCCCCTCAACCATGCTAACAACTGACGACCAGGAGATGCTGCAGGATGTCAGTAAGAGAAGACGGGTTCCCGGAATTAGTAAAAGTCAGGACTATGACAACGCAAACTCTAGTTTGGGAAACCGGAGCAGATTGAACAAGAGTAACAGCTATACATCTGGGGAAGAAACCAAGAAATTGTTACCTTTCAGTAGGCTCTCTTCTGGGGTTCCTGTCATTGATTTTGGTATAGATAAGGAAAAAGCCTTGGATGTTATAAATAGAGTGGACACACAGAGAGATCATCATCATCCAAGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L24e zf-RanBP

Protein Analysis

698

Amino Acids

78.68

Weight (kDa)

8.8

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	51 - 99	1e-09	PPR repeat family
PPR_1	PF12854	148 - 177	3.9e-09	PPR repeat
PPR_2	PF13041	149 - 181	5.4e-07	PPR repeat family
PPR	PF01535	152 - 181	1.1e-07	PPR repeat
PPR_3	PF13812	278 - 330	8.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	283 - 330	2.5e-10	PPR repeat family
E_motif	PF20431	402 - 452	2e-10	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17790
fragaria_vesca	FvH4_2g05470
malus_domestica	MD12G1012900.v1.1 MD14G1010700.v1.1
prunus_persica	Prupe.7G017200_v2.0.a1
pyrus_communis	pycom05g28400 pycom12g01030 pycom14g00910
rosa_chinensis	RchiOBHm_Chr3g0495901
rosa_laevigata	RLG00000022581
rosa_multiflora	Rmu_co8376015.1_g000001 Rmu_co8410629.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389920
rosa_rugosa	Rorug03G0276900 Rorug03G0277000 Rorug03G0277100
rosa_samantha	Rh3AG324800 Rh3BG360800 Rh3CG357100 Rh3DG359900
rosa_wichuraiana	Rw3G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2051
AccB1I	GGYRCC	4 cut(s)	148, 248, 301, 1526
AccB7I	CCANNNNNTGG	1 cut(s)	1536
AciI	CCGC	3 cut(s)	90, 1364, 1729
AclWI	GGATC	1 cut(s)	1351
AcoI	YGGCCR	1 cut(s)	1204
AcsI	RAATTY	3 cut(s)	141, 410, 1044
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	3 cut(s)	772, 1561, 1659
AfiI	CCNNNNNNNGG	2 cut(s)	1107, 1536
AflIII	ACRYGT	1 cut(s)	1290
AhlI	ACTAGT	3 cut(s)	464, 1666, 1715
AjnI	CCWGG	2 cut(s)	1359, 1824
AleI	CACNNNNGTG	1 cut(s)	1718
AloI	GAACNNNNNNTCC	2 cut(s)	1260, 1292
Alw21I	GWGCWC	1 cut(s)	768
Alw26I	GTCTC	6 cut(s)	119, 221, 663, 1565, 1610, 1696
AlwI	GGATC	1 cut(s)	1351
Ama87I	CYCGRG	1 cut(s)	1423
AoxI	GGCC	3 cut(s)	43, 1098, 1204
ApeKI	GCWGC	4 cut(s)	841, 1516, 1780, 1834
ApoI	RAATTY	3 cut(s)	141, 410, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	944, 1099
AsuC2I	CCSGG	1 cut(s)	1866
AsuHPI	GGTGA	8 cut(s)	31, 49, 58, 119, 908, 1559, 1615, 1725
AvaI	CYCGRG	1 cut(s)	1423
AvaII	GGWCC	1 cut(s)	944
BalI	TGGCCA	1 cut(s)	1206
BanI	GGYRCC	4 cut(s)	148, 248, 301, 1526
BanII	GRGCYC	1 cut(s)	768
BarI	GAAGNNNNNNTAC	6 cut(s)	1641, 1662, 1673, 1694, 1978, 2010
BbsI	GAAGAC	1 cut(s)	1861
Bbv12I	GWGCWC	1 cut(s)	768
BbvI	GCAGC	4 cut(s)	828, 1503, 1792, 1821
BccI	CCATC	1 cut(s)	1632
BceAI	ACGGC	1 cut(s)	789
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 549, 583
BciT130I	CCWGG	2 cut(s)	1361, 1826
BclI	TGATCA	3 cut(s)	177, 313, 873
BcnI	CCSGG	1 cut(s)	1866
BcoDI	GTCTC	6 cut(s)	119, 221, 663, 1565, 1610, 1696
BcuI	ACTAGT	3 cut(s)	464, 1666, 1715
BfaI	CTAG	6 cut(s)	47, 369, 465, 1667, 1716, 1905
BfmI	CTRYAG	1 cut(s)	1835
BfoI	RGCGCY	1 cut(s)	252
BisI	GCNGC	4 cut(s)	842, 1517, 1781, 1835
BlsI	GCNGC	4 cut(s)	843, 1518, 1782, 1836
BmcAI	AGTACT	1 cut(s)	1561
Bme1390I	CCNGG	3 cut(s)	1361, 1826, 1866
Bme18I	GGWCC	1 cut(s)	944
BmeT110I	CYCGRG	1 cut(s)	1423
BmgT120I	GGNCC	2 cut(s)	944, 1099
BmiI	GGNNCC	8 cut(s)	150, 250, 303, 945, 1155, 1528, 1863, 2004
BmrFI	CCNGG	3 cut(s)	1361, 1826, 1866
BmrI	ACTGGG	1 cut(s)	1321
BmsI	GCATC	5 cut(s)	496, 805, 828, 1718, 1821
BmuI	ACTGGG	1 cut(s)	1321
BpiI	GAAGAC	1 cut(s)	1861
BpmI	CTGGAG	1 cut(s)	1044
Bpu10I	CCTNAGC	1 cut(s)	1331
BpuEI	CTTGAG	2 cut(s)	782, 1769
BpuMI	CCSGG	1 cut(s)	1866
BsaBI	GATNNNNATC	1 cut(s)	2079
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	2 cut(s)	221, 1696
BsaJI	CCNNGG	4 cut(s)	742, 1441, 2040, 2087
BsaWI	WCCGGW	1 cut(s)	1917
BsaXI	ACNNNNNCTCC	2 cut(s)	1307, 1337
Bsc4I	CCNNNNNNNGG	2 cut(s)	1107, 1536
Bse118I	RCCGGY	2 cut(s)	41, 1220
Bse1I	ACTGG	2 cut(s)	1316, 1567
Bse3DI	GCAATG	4 cut(s)	496, 567, 1053, 1155
Bse8I	GATNNNNATC	1 cut(s)	2079
BseBI	CCWGG	2 cut(s)	1361, 1826
BseDI	CCNNGG	4 cut(s)	742, 1441, 2040, 2087
BseGI	GGATG	7 cut(s)	1324, 1401, 1486, 1709, 1846, 2050, 2083
BseJI	GATNNNNATC	1 cut(s)	2079
BseLI	CCNNNNNNNGG	2 cut(s)	1107, 1536
BseMI	GCAATG	4 cut(s)	496, 567, 1053, 1155
BseMII	CTCAG	5 cut(s)	387, 525, 1440, 1560, 1590
BseNI	ACTGG	2 cut(s)	1316, 1567
BseXI	GCAGC	4 cut(s)	828, 1503, 1792, 1821
BseYI	CCCAGC	1 cut(s)	1106
BshFI	GGCC	3 cut(s)	45, 1100, 1206
BshNI	GGYRCC	4 cut(s)	148, 248, 301, 1526
BsiHKAI	GWGCWC	1 cut(s)	768
BsiHKCI	CYCGRG	1 cut(s)	1423
BsiSI	CCGG	5 cut(s)	42, 146, 1221, 1866, 1918
BslFI	GGGAC	3 cut(s)	957, 1044, 1459
BslI	CCNNNNNNNGG	2 cut(s)	1107, 1536
BsmAI	GTCTC	6 cut(s)	119, 221, 663, 1565, 1610, 1696
BsmFI	GGGAC	3 cut(s)	957, 1044, 1459
BsmI	GAATGC	2 cut(s)	589, 701
BsnI	GGCC	3 cut(s)	45, 1100, 1206
Bso31I	GGTCTC	2 cut(s)	221, 1696
BsoBI	CYCGRG	1 cut(s)	1423
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp143I	GATC	6 cut(s)	177, 313, 873, 1090, 1356, 2074
Bsp19I	CCATGG	1 cut(s)	742
BspACI	CCGC	3 cut(s)	90, 1364, 1729
BspANI	GGCC	3 cut(s)	45, 1100, 1206
BspCNI	CTCAG	5 cut(s)	386, 526, 1441, 1561, 1591
BspLI	GGNNCC	8 cut(s)	150, 250, 303, 945, 1155, 1528, 1863, 2004
BspMAI	CTGCAG	1 cut(s)	1839
BspPI	GGATC	1 cut(s)	1351
BspT107I	GGYRCC	4 cut(s)	148, 248, 301, 1526
BspTNI	GGTCTC	2 cut(s)	221, 1696
BsrDI	GCAATG	4 cut(s)	496, 567, 1053, 1155
BsrFI	RCCGGY	2 cut(s)	41, 1220
BsrI	ACTGG	2 cut(s)	1316, 1567
BssAI	RCCGGY	2 cut(s)	41, 1220
BssECI	CCNNGG	4 cut(s)	742, 1441, 2040, 2087
BssMI	GATC	6 cut(s)	177, 313, 873, 1090, 1356, 2074
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	4 cut(s)	742, 1441, 2040, 2087
Bst2UI	CCWGG	2 cut(s)	1361, 1826
Bst4CI	ACNGT	6 cut(s)	107, 277, 392, 557, 1489, 1580
Bst6I	CTCTTC	1 cut(s)	1999
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	74, 1023, 1707
BstDEI	CTNAG	7 cut(s)	79, 373, 534, 1331, 1449, 1569, 1599
BstDSI	CCRYGG	1 cut(s)	742
BstEII	GGTNACC	1 cut(s)	1731
BstF5I	GGATG	7 cut(s)	1324, 1401, 1486, 1709, 1846, 2050, 2083
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	6 cut(s)	180, 316, 876, 1093, 1359, 2077
BstMAI	GTCTC	6 cut(s)	119, 221, 663, 1565, 1610, 1696
BstMBI	GATC	6 cut(s)	177, 313, 873, 1090, 1356, 2074
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 1022
BstNI	CCWGG	2 cut(s)	1361, 1826
BstNSI	RCATGY	2 cut(s)	990, 1294
BstPI	GGTNACC	1 cut(s)	1731
BstSCI	CCNGG	3 cut(s)	1359, 1824, 1864
BstSFI	CTRYAG	1 cut(s)	1835
BstV1I	GCAGC	4 cut(s)	828, 1503, 1792, 1821
BstV2I	GAAGAC	1 cut(s)	1861
BstX2I	RGATCY	1 cut(s)	1356
BstXI	CCANNNNNNTGG	2 cut(s)	181, 1720
BstYI	RGATCY	1 cut(s)	1356
BsuRI	GGCC	3 cut(s)	45, 1100, 1206
BtgI	CCRYGG	1 cut(s)	742
BtsCI	GGATG	7 cut(s)	1324, 1401, 1486, 1709, 1846, 2050, 2083
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	562, 981
Cac8I	GCNNGC	3 cut(s)	74, 1023, 1707
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	2 cut(s)	41, 1220
Cfr13I	GGNCC	2 cut(s)	944, 1099
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	3 cut(s)	771, 1560, 1658
CviQI	GTAC	3 cut(s)	771, 1560, 1658
DdeI	CTNAG	7 cut(s)	79, 373, 534, 1331, 1449, 1569, 1599
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	6 cut(s)	179, 315, 875, 1092, 1358, 2076
DpnII	GATC	6 cut(s)	177, 313, 873, 1090, 1356, 2074
EaeI	YGGCCR	1 cut(s)	1204
Eam1104I	CTCTTC	1 cut(s)	1999
EarI	CTCTTC	1 cut(s)	1999
EciI	GGCGGA	2 cut(s)	79, 1379
Ecl136II	GAGCTC	1 cut(s)	766
Eco130I	CCWWGG	4 cut(s)	742, 1441, 2040, 2087
Eco24I	GRGCYC	1 cut(s)	768
Eco31I	GGTCTC	2 cut(s)	221, 1696
Eco47I	GGWCC	1 cut(s)	944
Eco53kI	GAGCTC	1 cut(s)	766
Eco88I	CYCGRG	1 cut(s)	1423
Eco91I	GGTNACC	1 cut(s)	1731
EcoICRI	GAGCTC	1 cut(s)	766
EcoO109I	RGGNCCY	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	1731
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	1359, 1824
EcoT14I	CCWWGG	4 cut(s)	742, 1441, 2040, 2087
EcoT38I	GRGCYC	1 cut(s)	768
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	4 cut(s)	742, 1441, 2040, 2087
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	3 cut(s)	957, 1044, 1459
FbaI	TGATCA	3 cut(s)	177, 313, 873
Fnu4HI	GCNGC	4 cut(s)	842, 1517, 1781, 1835
FokI	GGATG	7 cut(s)	1331, 1388, 1493, 1696, 1853, 2057, 2070
FriOI	GRGCYC	1 cut(s)	768
Fsp4HI	GCNGC	4 cut(s)	842, 1517, 1781, 1835
FspBI	CTAG	6 cut(s)	47, 369, 465, 1667, 1716, 1905
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	4 cut(s)	842, 1517, 1781, 1835
GsaI	CCCAGC	1 cut(s)	1110
GsuI	CTGGAG	1 cut(s)	1044
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	3 cut(s)	45, 1100, 1206
HapII	CCGG	5 cut(s)	42, 146, 1221, 1866, 1918
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HindIII	AAGCTT	5 cut(s)	288, 1235, 1433, 1463, 1496
HinfI	GANTC	7 cut(s)	127, 656, 721, 804, 1198, 1426, 1606
HpaII	CCGG	5 cut(s)	42, 146, 1221, 1866, 1918
HphI	GGTGA	8 cut(s)	31, 49, 58, 119, 908, 1559, 1615, 1725
Hpy166II	GTNNAC	5 cut(s)	388, 1399, 1583, 1658, 2062
Hpy188III	TCNNGA	5 cut(s)	190, 617, 1061, 1492, 1883
Hpy8I	GTNNAC	5 cut(s)	388, 1399, 1583, 1658, 2062
Hpy99I	CGWCG	2 cut(s)	633, 636
HpyAV	CCTTC	6 cut(s)	94, 234, 704, 934, 1263, 1339
HpyCH4III	ACNGT	6 cut(s)	107, 277, 392, 557, 1489, 1580
HpyCH4IV	ACGT	1 cut(s)	1033
HpyCH4V	TGCA	9 cut(s)	560, 701, 794, 986, 1083, 1380, 1631, 1709, 1837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 1022
HpyF3I	CTNAG	7 cut(s)	79, 373, 534, 1331, 1449, 1569, 1599
HpySE526I	ACGT	1 cut(s)	1033
Hsp92I	GRCGYC	1 cut(s)	249
HspAI	GCGC	1 cut(s)	249
KasI	GGCGCC	1 cut(s)	248
Ksp22I	TGATCA	3 cut(s)	177, 313, 873
Kzo9I	GATC	6 cut(s)	177, 313, 873, 1090, 1356, 2074
LmnI	GCTCC	4 cut(s)	1063, 1163, 1594, 1920
Lsp1109I	GCAGC	4 cut(s)	828, 1503, 1792, 1821
LweI	GCATC	5 cut(s)	496, 805, 828, 1718, 1821
MaeI	CTAG	6 cut(s)	47, 369, 465, 1667, 1716, 1905
MaeII	ACGT	1 cut(s)	1033
MaeIII	GTNAC	7 cut(s)	364, 512, 853, 961, 1731, 1937, 1974
MalI	GATC	6 cut(s)	179, 315, 875, 1092, 1358, 2076
MboI	GATC	6 cut(s)	177, 313, 873, 1090, 1356, 2074
MboII	GAAGA	3 cut(s)	1866, 1970, 1986
MflI	RGATCY	1 cut(s)	1356
MhlI	GDGCHC	1 cut(s)	768
MlsI	TGGCCA	1 cut(s)	1206
MluNI	TGGCCA	1 cut(s)	1206
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	3 cut(s)	121, 665, 1435
MmeI	TCCRAC	2 cut(s)	440, 952
Mox20I	TGGCCA	1 cut(s)	1206
MscI	TGGCCA	1 cut(s)	1206
MseI	TTAA	5 cut(s)	285, 678, 810, 1185, 1740
MslI	CAYNNNNRTG	3 cut(s)	179, 351, 1718
Msp20I	TGGCCA	1 cut(s)	1206
MspI	CCGG	5 cut(s)	42, 146, 1221, 1866, 1918
MspR9I	CCNGG	3 cut(s)	1361, 1826, 1866
Mva1269I	GAATGC	2 cut(s)	589, 701
MvaI	CCWGG	2 cut(s)	1361, 1826
MwoI	GCNNNNNNNGC	2 cut(s)	89, 1022
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	1866
NcoI	CCATGG	1 cut(s)	742
NdeII	GATC	6 cut(s)	177, 313, 873, 1090, 1356, 2074
NlaIV	GGNNCC	8 cut(s)	150, 250, 303, 945, 1155, 1528, 1863, 2004
NmuCI	GTSAC	3 cut(s)	512, 961, 1731
NspI	RCATGY	2 cut(s)	990, 1294
OliI	CACNNNNGTG	1 cut(s)	1718
PaeR7I	CTCGAG	1 cut(s)	1423
PciI	ACATGT	1 cut(s)	1290
PctI	GAATGC	2 cut(s)	589, 701
PfeI	GAWTC	4 cut(s)	721, 804, 1198, 1606
PflMI	CCANNNNNTGG	1 cut(s)	1536
PfoI	TCCNGGA	1 cut(s)	1864
PkrI	GCNGC	4 cut(s)	843, 1518, 1782, 1836
PleI	GAGTC	3 cut(s)	121, 664, 1434
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	3 cut(s)	121, 664, 1434
PpuMI	RGGWCCY	1 cut(s)	944
PscI	ACATGT	1 cut(s)	1290
PsiI	TTATAA	1 cut(s)	2051
Psp124BI	GAGCTC	1 cut(s)	768
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	2 cut(s)	1359, 1824
PspEI	GGTNACC	1 cut(s)	1731
PspFI	CCCAGC	1 cut(s)	1106
PspGI	CCWGG	2 cut(s)	1359, 1824
PspN4I	GGNNCC	8 cut(s)	150, 250, 303, 945, 1155, 1528, 1863, 2004
PspPI	GGNCC	2 cut(s)	944, 1099
PspPPI	RGGWCCY	1 cut(s)	944
PspXI	VCTCGAGB	1 cut(s)	1423
PstI	CTGCAG	1 cut(s)	1839
PsuI	RGATCY	1 cut(s)	1356
RsaI	GTAC	3 cut(s)	772, 1561, 1659
RsaNI	GTAC	3 cut(s)	771, 1560, 1658
RseI	CAYNNNNRTG	3 cut(s)	179, 351, 1718
SacI	GAGCTC	1 cut(s)	768
SaqAI	TTAA	5 cut(s)	285, 678, 810, 1185, 1740
SatI	GCNGC	4 cut(s)	842, 1517, 1781, 1835
Sau3AI	GATC	6 cut(s)	177, 313, 873, 1090, 1356, 2074
Sau96I	GGNCC	2 cut(s)	944, 1099
ScaI	AGTACT	1 cut(s)	1561
SchI	GAGTC	3 cut(s)	121, 665, 1435
ScrFI	CCNGG	3 cut(s)	1361, 1826, 1866
SduI	GDGCHC	1 cut(s)	768
SfaNI	GCATC	5 cut(s)	496, 805, 828, 1718, 1821
SfcI	CTRYAG	1 cut(s)	1835
SfoI	GGCGCC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	1423
SinI	GGWCC	1 cut(s)	944
SlaI	CTCGAG	1 cut(s)	1423
SmiMI	CAYNNNNRTG	3 cut(s)	179, 351, 1718
SmlI	CTYRAG	4 cut(s)	11, 761, 1423, 1784
SmoI	CTYRAG	4 cut(s)	11, 761, 1423, 1784
SpeI	ACTAGT	3 cut(s)	464, 1666, 1715
SsiI	CCGC	3 cut(s)	90, 1364, 1729
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	6 cut(s)	47, 369, 465, 1667, 1716, 1905
SstI	GAGCTC	1 cut(s)	768
StyD4I	CCNGG	3 cut(s)	1359, 1824, 1864
StyI	CCWWGG	4 cut(s)	742, 1441, 2040, 2087
TaaI	ACNGT	6 cut(s)	107, 277, 392, 557, 1489, 1580
TaiI	ACGT	1 cut(s)	1036
TaqI	TCGA	5 cut(s)	139, 265, 522, 705, 1424
TatI	WGTACW	2 cut(s)	1559, 1657
TfiI	GAWTC	4 cut(s)	721, 804, 1198, 1606
Tru1I	TTAA	5 cut(s)	285, 678, 810, 1185, 1740
Tru9I	TTAA	5 cut(s)	285, 678, 810, 1185, 1740
TscAI	CASTG	2 cut(s)	562, 988
TseFI	GTSAC	3 cut(s)	512, 961, 1731
TseI	GCWGC	4 cut(s)	841, 1516, 1780, 1834
Tsp45I	GTSAC	3 cut(s)	512, 961, 1731
TspGWI	ACGGA	1 cut(s)	1176
TspRI	CASTG	2 cut(s)	562, 988
Van91I	CCANNNNNTGG	1 cut(s)	1536
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	3 cut(s)	141, 410, 1044
XceI	RCATGY	2 cut(s)	990, 1294
XhoI	CTCGAG	1 cut(s)	1423
XspI	CTAG	6 cut(s)	47, 369, 465, 1667, 1716, 1905
ZrmI	AGTACT	1 cut(s)	1561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.