Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010797

Physical Location & Seq

Genomic Coordinates Forward (+)

30020619 .. 30022220

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGAGCACAGATTCATCATCGGGTTCACAGCACCCGCAGCTCCCACCGGGGTTCCGCTTCCACCCGACAGACGAAGAACTGGTGGTCCATTACCTCAAGAAAAAGGCCGCCTCCATCCCGCTTCCGGTCACCATCATCGCAGAGGTAGACTTGTACAAGTTTGATCCATGGGAACTACCAAGTAAGGCAACATTTGGGGAGCAAGAGTGGTATTTTTTCACTCCAAGGGACCGGAAGTACCCGAATGGGGCACGGCCAAACAGGGCAGCAACTTCAGGATATTGGAAGGCAACCGGGACCGATAAGCCTATTCTAACATCAATCGGAAACCACAACGTCGGTGTGAAAAAAGCTCTTGTTTTCTATGGAGGGAAGCCCCCAAAAGGGATTAAAACCAATTGGATTATGCATGAGTATCGCCTTATCAACAACACCACAACCGCCAATATGAGTTTTAGTACCACTAAGCCTTCTGATGCAGCGAACAAGAAAGCCTCCCTAAGGCTTGATGATTGGGTTTTGTGCCGGGTTTATAAGAAAAACAATGCGCAAAGGCCTACGATGTCTATGGAGGGTGATCATTTTCTTCACAAGGCCGAGGACTCTAATAGTTCTATGGAAGAGGGTATGTTTCTCCACCCATCAATATTGCCAACTCAAAAACCGCCGCCGTTCCCGCCACCACTGTCATCAAAGCTGCCAACTACAAATTACACGGCGTTGCTTGAAAGCGATTATCACGAGAGCTTTTTCGAGGGCATACTATCGTCAAGCGATCATCAACAAGGCTCTCATTCTCATCATCATGACCATGATCATGATCAGTTTGGAGCCATATCAACTTCAAGCTCAAAAACCAGCATACCCTTGAAACGTCAACTTTCATCACCATTTTGGAACGACGTGGGATCGATAGGGTCTGCTGCTGCCGCTACTACTACTTCATCGAGCAAAAGGTTTCAAGCTGATCTCAACAGTGAAAACAACTCATTTGTTTCCATGCTGAATCAGATGCCACAGGGTACGGCGCCGTTCTACCCTAATCCTGCACTTCTTGGTTCACTAGGAGATGAGGTTTTGCGCCCACAGTTTCAACTCCCAAGCATGAACTGGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

375

Amino Acids

41.64

Weight (kDa)

7.3

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 142	1.1e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61110
fragaria_vesca	FvH4_3g04630
malus_domestica	MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica	Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis	pycom05g29620 pycom10g25260
rosa_chinensis	RchiOBHm_Chr5g0007561
rosa_laevigata	RLG00000031468
rosa_multiflora	Rmu_ssc0000182.1_g000018
rosa_roxburghii	Rroxscaffold_1G00068840
rosa_rugosa	Rorug04G0428600 Rorug04G0428700
rosa_samantha	Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana	Rw5G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
Acc16I	TGCGCA	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	1030
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	9 cut(s)	38, 58, 111, 122, 444, 668, 671, 680, 933
AclWI	GGATC	2 cut(s)	161, 919
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	1117
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	1031
AfaI	GTAC	4 cut(s)	158, 242, 463, 1027
AfiI	CCNNNNNNNGG	5 cut(s)	127, 250, 386, 387, 504
AgsI	TTSAA	5 cut(s)	731, 849, 874, 965, 1097
AjiI	CACGTC	1 cut(s)	907
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	6 cut(s)	43, 356, 700, 750, 852, 968
AluI	AGCT	6 cut(s)	43, 356, 700, 750, 852, 968
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	161, 919
AoxI	GGCC	4 cut(s)	108, 257, 557, 597
ApeKI	GCWGC	6 cut(s)	40, 269, 482, 700, 926, 929
ApoI	RAATTY	1 cut(s)	1117
AspLEI	GCGC	3 cut(s)	553, 1033, 1086
AspS9I	GGNCC	3 cut(s)	88, 232, 300
AsuC2I	CCSGG	3 cut(s)	51, 298, 530
AsuHPI	GGTGA	3 cut(s)	124, 590, 882
AvaII	GGWCC	3 cut(s)	88, 232, 300
AxyI	CCTNAGG	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	1030
BauI	CACGAG	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	6 cut(s)	52, 281, 494, 687, 913, 916
BccI	CCATC	3 cut(s)	125, 143, 652
BceAI	ACGGC	5 cut(s)	272, 658, 735, 1018, 1044
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BclI	TGATCA	3 cut(s)	580, 817, 823
BcnI	CCSGG	3 cut(s)	51, 298, 530
BfaI	CTAG	1 cut(s)	1067
BfoI	RGCGCY	1 cut(s)	1034
BisI	GCNGC	9 cut(s)	41, 111, 270, 483, 671, 701, 927, 930, 933
BlsI	GCNGC	9 cut(s)	42, 112, 271, 484, 672, 702, 928, 931, 934
Bme1390I	CCNGG	3 cut(s)	51, 298, 530
Bme18I	GGWCC	3 cut(s)	88, 232, 300
BmgBI	CACGTC	1 cut(s)	907
BmgT120I	GGNCC	3 cut(s)	88, 232, 300
BmiI	GGNNCC	5 cut(s)	56, 233, 301, 835, 1032
BmrFI	CCNGG	3 cut(s)	51, 298, 530
BmsI	GCATC	2 cut(s)	469, 1005
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	3 cut(s)	51, 298, 530
Bsa29I	ATCGAT	1 cut(s)	914
BsaBI	GATNNNNATC	1 cut(s)	822
BsaHI	GRCGYC	1 cut(s)	1031
BsaJI	CCNNGG	4 cut(s)	50, 170, 227, 600
BsaWI	WCCGGW	2 cut(s)	127, 234
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 1062, 1092
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 250, 386, 387, 504
Bse1I	ACTGG	2 cut(s)	87, 1118
Bse21I	CCTNAGG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	822
BseCI	ATCGAT	1 cut(s)	914
BseDI	CCNNGG	4 cut(s)	50, 170, 227, 600
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	5 cut(s)	127, 250, 386, 387, 504
BseNI	ACTGG	2 cut(s)	87, 1118
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	6 cut(s)	52, 281, 494, 687, 913, 916
BsgI	GTGCAG	1 cut(s)	1035
BshFI	GGCC	4 cut(s)	110, 259, 559, 599
BshNI	GGYRCC	1 cut(s)	1030
BshVI	ATCGAT	1 cut(s)	914
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	5 cut(s)	50, 128, 235, 297, 529
BslFI	GGGAC	2 cut(s)	245, 313
BslI	CCNNNNNNNGG	5 cut(s)	127, 250, 386, 387, 504
BsmFI	GGGAC	2 cut(s)	245, 313
BsnI	GGCC	4 cut(s)	110, 259, 559, 599
Bsp1286I	GDGCHC	2 cut(s)	11, 256
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	7 cut(s)	166, 580, 778, 817, 823, 911, 970
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	9 cut(s)	38, 58, 111, 122, 444, 668, 671, 680, 933
BspANI	GGCC	4 cut(s)	110, 259, 559, 599
BspDI	ATCGAT	1 cut(s)	914
BspHI	TCATGA	2 cut(s)	808, 820
BspLI	GGNNCC	5 cut(s)	56, 233, 301, 835, 1032
BspPI	GGATC	2 cut(s)	161, 919
BspT107I	GGYRCC	1 cut(s)	1030
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	87, 1118
BssECI	CCNNGG	4 cut(s)	50, 170, 227, 600
BssMI	GATC	7 cut(s)	166, 580, 778, 817, 823, 911, 970
BssNI	GRCGYC	1 cut(s)	1031
BssSI	CACGAG	1 cut(s)	743
BssT1I	CCWWGG	2 cut(s)	170, 227
Bst2BI	CACGAG	1 cut(s)	743
Bst4CI	ACNGT	3 cut(s)	690, 980, 1092
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	1 cut(s)	1031
BstAUI	TGTACA	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	468, 503
BstDSI	CCRYGG	1 cut(s)	170
BstEII	GGTNACC	1 cut(s)	130
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	1034
BstHHI	GCGC	3 cut(s)	553, 1033, 1086
BstKTI	GATC	7 cut(s)	169, 583, 781, 820, 826, 914, 973
BstMBI	GATC	7 cut(s)	166, 580, 778, 817, 823, 911, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 679, 932
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	3 cut(s)	49, 296, 528
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	6 cut(s)	52, 281, 494, 687, 913, 916
Bsu15I	ATCGAT	1 cut(s)	914
Bsu36I	CCTNAGG	1 cut(s)	503
BsuRI	GGCC	4 cut(s)	110, 259, 559, 599
BsuTUI	ATCGAT	1 cut(s)	914
BtgI	CCRYGG	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	907
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	686, 985
CciI	TCATGA	2 cut(s)	808, 820
CfoI	GCGC	3 cut(s)	553, 1033, 1086
Cfr13I	GGNCC	3 cut(s)	88, 232, 300
ClaI	ATCGAT	1 cut(s)	914
Csp6I	GTAC	4 cut(s)	157, 241, 462, 1026
CviAII	CATG	7 cut(s)	171, 413, 809, 815, 821, 1003, 1108
CviQI	GTAC	4 cut(s)	157, 241, 462, 1026
DdeI	CTNAG	2 cut(s)	468, 503
DinI	GGCGCC	1 cut(s)	1032
DpnI	GATC	7 cut(s)	168, 582, 780, 819, 825, 913, 972
DpnII	GATC	7 cut(s)	166, 580, 778, 817, 823, 911, 970
EaeI	YGGCCR	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	2 cut(s)	170, 227
Eco147I	AGGCCT	1 cut(s)	559
Eco47I	GGWCC	3 cut(s)	88, 232, 300
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	503
Eco91I	GGTNACC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoO65I	GGTNACC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	1117
EcoT14I	CCWWGG	2 cut(s)	170, 227
EcoT22I	ATGCAT	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	1032
EheI	GGCGCC	1 cut(s)	1032
ErhI	CCWWGG	2 cut(s)	170, 227
FaeI	CATG	7 cut(s)	174, 416, 812, 818, 824, 1006, 1111
FaqI	GGGAC	2 cut(s)	245, 313
FatI	CATG	7 cut(s)	170, 412, 808, 814, 820, 1002, 1107
FauI	CCCGC	3 cut(s)	45, 129, 687
FbaI	TGATCA	3 cut(s)	580, 817, 823
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	9 cut(s)	41, 111, 270, 483, 671, 701, 927, 930, 933
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	9 cut(s)	41, 111, 270, 483, 671, 701, 927, 930, 933
FspBI	CTAG	1 cut(s)	1067
FspI	TGCGCA	1 cut(s)	552
GlaI	GCGC	3 cut(s)	552, 1032, 1085
GluI	GCNGC	9 cut(s)	41, 111, 270, 483, 671, 701, 927, 930, 933
HaeII	RGCGCY	1 cut(s)	1034
HaeIII	GGCC	4 cut(s)	110, 259, 559, 599
HapII	CCGG	5 cut(s)	50, 128, 235, 297, 529
HhaI	GCGC	3 cut(s)	553, 1033, 1086
Hin1I	GRCGYC	1 cut(s)	1031
Hin1II	CATG	7 cut(s)	174, 416, 812, 818, 824, 1006, 1111
Hin6I	GCGC	3 cut(s)	551, 1031, 1084
HinP1I	GCGC	3 cut(s)	551, 1031, 1084
HincII	GTYRAC	1 cut(s)	881
HindII	GTYRAC	1 cut(s)	881
HinfI	GANTC	3 cut(s)	14, 605, 1009
HpaII	CCGG	5 cut(s)	50, 128, 235, 297, 529
HphI	GGTGA	3 cut(s)	124, 590, 882
Hpy166II	GTNNAC	4 cut(s)	29, 151, 881, 1064
Hpy188I	TCNGA	3 cut(s)	329, 478, 1014
Hpy188III	TCNNGA	5 cut(s)	100, 279, 743, 809, 821
Hpy8I	GTNNAC	4 cut(s)	29, 151, 881, 1064
Hpy99I	CGWCG	2 cut(s)	344, 908
HpyAV	CCTTC	2 cut(s)	283, 483
HpyCH4III	ACNGT	3 cut(s)	690, 980, 1092
HpyCH4IV	ACGT	3 cut(s)	339, 877, 906
HpyCH4V	TGCA	3 cut(s)	412, 482, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 679, 932
HpyF3I	CTNAG	2 cut(s)	468, 503
HpySE526I	ACGT	3 cut(s)	339, 877, 906
Hsp92I	GRCGYC	1 cut(s)	1031
Hsp92II	CATG	7 cut(s)	174, 416, 812, 818, 824, 1006, 1111
HspAI	GCGC	3 cut(s)	551, 1031, 1084
KasI	GGCGCC	1 cut(s)	1030
Ksp22I	TGATCA	3 cut(s)	580, 817, 823
Kzo9I	GATC	7 cut(s)	166, 580, 778, 817, 823, 911, 970
LmnI	GCTCC	3 cut(s)	48, 202, 833
Lsp1109I	GCAGC	6 cut(s)	52, 281, 494, 687, 913, 916
LweI	GCATC	2 cut(s)	469, 1005
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	3 cut(s)	339, 877, 906
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	7 cut(s)	168, 582, 780, 819, 825, 913, 972
MboI	GATC	7 cut(s)	166, 580, 778, 817, 823, 911, 970
MboII	GAAGA	3 cut(s)	89, 581, 635
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	11, 256
MluCI	AATT	3 cut(s)	400, 712, 1117
Mly113I	GGCGCC	1 cut(s)	1031
MlyI	GAGTC	1 cut(s)	599
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	3 cut(s)	807, 813, 819
MspI	CCGG	5 cut(s)	50, 128, 235, 297, 529
MspR9I	CCNGG	3 cut(s)	51, 298, 530
MunI	CAATTG	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	40, 679, 932
NarI	GGCGCC	1 cut(s)	1031
NciI	CCSGG	3 cut(s)	51, 298, 530
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	7 cut(s)	166, 580, 778, 817, 823, 911, 970
NlaIII	CATG	7 cut(s)	174, 416, 812, 818, 824, 1006, 1111
NlaIV	GGNNCC	5 cut(s)	56, 233, 301, 835, 1032
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	1 cut(s)	130
NsbI	TGCGCA	1 cut(s)	552
NsiI	ATGCAT	1 cut(s)	414
PagI	TCATGA	2 cut(s)	808, 820
PceI	AGGCCT	1 cut(s)	559
PfeI	GAWTC	2 cut(s)	14, 1009
PkrI	GCNGC	9 cut(s)	42, 112, 271, 484, 672, 702, 928, 931, 934
PleI	GAGTC	1 cut(s)	599
PluTI	GGCGCC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	599
PsiI	TTATAA	1 cut(s)	537
PspEI	GGTNACC	1 cut(s)	130
PspN4I	GGNNCC	5 cut(s)	56, 233, 301, 835, 1032
PspPI	GGNCC	3 cut(s)	88, 232, 300
RsaI	GTAC	4 cut(s)	158, 242, 463, 1027
RsaNI	GTAC	4 cut(s)	157, 241, 462, 1026
RseI	CAYNNNNRTG	3 cut(s)	807, 813, 819
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	9 cut(s)	41, 111, 270, 483, 671, 701, 927, 930, 933
Sau3AI	GATC	7 cut(s)	166, 580, 778, 817, 823, 911, 970
Sau96I	GGNCC	3 cut(s)	88, 232, 300
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	3 cut(s)	51, 298, 530
SduI	GDGCHC	2 cut(s)	11, 256
SfaNI	GCATC	2 cut(s)	469, 1005
SfoI	GGCGCC	1 cut(s)	1032
SinI	GGWCC	3 cut(s)	88, 232, 300
SmiMI	CAYNNNNRTG	3 cut(s)	807, 813, 819
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	400, 712, 1117
SseBI	AGGCCT	1 cut(s)	559
SsiI	CCGC	9 cut(s)	38, 58, 111, 122, 444, 668, 671, 680, 933
SspDI	GGCGCC	1 cut(s)	1030
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	1 cut(s)	1067
StuI	AGGCCT	1 cut(s)	559
StyD4I	CCNGG	3 cut(s)	49, 296, 528
StyI	CCWWGG	2 cut(s)	170, 227
TaaI	ACNGT	3 cut(s)	690, 980, 1092
TaiI	ACGT	3 cut(s)	342, 880, 909
TaqI	TCGA	3 cut(s)	756, 914, 950
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	3 cut(s)	400, 712, 1117
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	3 cut(s)	113, 673, 935
TfiI	GAWTC	2 cut(s)	14, 1009
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	693, 985
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	6 cut(s)	40, 269, 482, 700, 926, 929
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	5 cut(s)	6, 876, 936, 1110, 1124
TspRI	CASTG	2 cut(s)	693, 985
VpaK11BI	GGWCC	3 cut(s)	88, 232, 300
XagI	CCTNNNNNAGG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	1117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1110
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	1067
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.