Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010753

Physical Location & Seq

Genomic Coordinates Reverse (-)

30725742 .. 30731925

Gene Structure 6184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCCACCCAACAACCCATCTCAAAGAAGACGGCTTGCGTCGTCGGCGGCACCGGGTTCGTGGCGTCTCTGCTGGTCAAGCTGCTGCTCCAGAAGGGCTACGCCGTCAGAACCACCGTCAGAGACCCAGACAATCACAAGAAGGTCTCTCACCTCACAGCACTACAAGAGTTGGGTGAGCTAGAGATTTTAGCAGGAGATCTAACTGATGAAGGGTGCTTCGATGCTCCGATAGCAGGTTGTAATCTTGTTTTCCACGTTGCAACCCCTGTCAACTTTGCCTCAGAGGACCCTGAGAACGACATGATCAAACCGGCAGTCCAAGGGGTACTAAACGTTCTGAAATCGTGTGTGAAAGCCCAAACAGTTAAGCGCGTTGTTTTGACATCATCAGCTGCTACAGTTTCGATCAATACACTTGAGGGAACAGGTTTGGTCATGGACGAAAAAGATTGGAGTGATTTGGAGTTCTTGACTACTGTAAAGCCACCCACTTGGGGGTACCTTGCCTCCAAGACACAAGCTGAGAAGACAGCTTGGAAATTCGCCGAAGAGAACAACATTGATCTCATCACTGTGATCCCTTCTCTTATGGCCGGTCCTTCTCTCACTCCAGACGTCCCTCACAGTAACATCCTTGCCATGTCCTTAATCACAGGAAATGATTTCCTCATAAATATGGCCTTGAAAGGTGTGCAAATGCTATCAGGTTCAATACCCATTTCACATGTGGAGGATGTCTGCCGGGCGCATATATTTTTGGCTGAGAAGGAATCTGCTTCTGGTCGGTACATTTGCTGTGCTGCCAACACCAGCGTTCCTGAGCTTGCTCAGTTCCTCAACAAAAGATACCCCCAGTACAATGTCCCCACTGAGTTTGGAGATTTTCCGTTCAAGGCCAAGGGGTTGCTGCATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0033729 GO:0048519 GO:0050789 GO:0055114 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko00941 ko01110 map00941 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

307

Amino Acids

33.07

Weight (kDa)

5.67

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	9 - 95	1.7e-09	NmrA-like family
Epimerase	PF01370	13 - 260	2.6e-26	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	14 - 181	2.9e-17	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	14 - 274	2.8e-12	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	15 - 218	4.1e-13	Male sterility protein
NAD_binding_10	PF13460	16 - 134	1e-10	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61720
fragaria_vesca	FvH4_3g02980
malus_domestica	MD05G1335600.v1.1 MD10G1311100.v1.1
prunus_persica	Prupe.4G029700_v2.0.a1
pyrus_communis	pycom05g30700 pycom10g26230
rosa_chinensis	RchiOBHm_Chr5g0004611
rosa_multiflora	Rmu_co8004590.1_g000001 Rmu_co8462841.1_g000001 Rmu_sc0003758.1_g000017 Rmu_sc0009128.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070930
rosa_rugosa	Rorug04G0412500
rosa_samantha	Rh5AG040600 Rh5BG040200 Rh5BG040300 Rh5CG044000 Rh5DG039900
rosa_wichuraiana	Rw5G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	227
Acc65I	GGTACC	1 cut(s)	501
AccB1I	GGYRCC	2 cut(s)	50, 501
AccII	CGCG	1 cut(s)	375
AciI	CCGC	1 cut(s)	48
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	1 cut(s)	574
AcoI	YGGCCR	2 cut(s)	3, 594
AcsI	RAATTY	1 cut(s)	542
AcyI	GRCGYC	2 cut(s)	65, 618
AfaI	GTAC	4 cut(s)	330, 503, 791, 860
AfiI	CCNNNNNNNGG	3 cut(s)	236, 497, 498
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	3 cut(s)	688, 714, 895
AluBI	AGCT	6 cut(s)	82, 181, 395, 524, 536, 826
AluI	AGCT	6 cut(s)	82, 181, 395, 524, 536, 826
Alw26I	GTCTC	3 cut(s)	72, 117, 151
AlwI	GGATC	1 cut(s)	574
AoxI	GGCC	4 cut(s)	3, 594, 681, 897
ApeKI	GCWGC	5 cut(s)	82, 85, 395, 803, 910
ApoI	RAATTY	1 cut(s)	542
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
Asp718I	GGTACC	1 cut(s)	501
AspLEI	GCGC	2 cut(s)	375, 751
AspS9I	GGNCC	2 cut(s)	289, 599
AsuC2I	CCSGG	2 cut(s)	55, 746
AsuHPI	GGTGA	2 cut(s)	143, 188
AvaII	GGWCC	2 cut(s)	289, 599
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	50, 501
BbsI	GAAGAC	2 cut(s)	35, 536
BbvI	GCAGC	5 cut(s)	69, 72, 382, 790, 897
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	48, 89
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BclI	TGATCA	1 cut(s)	306
BcnI	CCSGG	2 cut(s)	55, 746
BcoDI	GTCTC	3 cut(s)	72, 117, 151
BfaI	CTAG	2 cut(s)	182, 919
BfmI	CTRYAG	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	6 cut(s)	49, 83, 86, 396, 804, 911
BlsI	GCNGC	6 cut(s)	50, 84, 87, 397, 805, 912
Bme1390I	CCNGG	2 cut(s)	55, 746
Bme18I	GGWCC	2 cut(s)	289, 599
BmgT120I	GGNCC	2 cut(s)	289, 599
BmiI	GGNNCC	3 cut(s)	52, 291, 503
BmrFI	CCNGG	2 cut(s)	55, 746
BmrI	ACTGGG	1 cut(s)	850
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	850
BpiI	GAAGAC	2 cut(s)	35, 536
BpmI	CTGGAG	2 cut(s)	74, 597
Bpu10I	CCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	55, 746
BsaHI	GRCGYC	2 cut(s)	65, 618
BsaI	GGTCTC	2 cut(s)	117, 151
BsaJI	CCNNGG	2 cut(s)	322, 900
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 497, 498
Bse118I	RCCGGY	2 cut(s)	313, 596
Bse1I	ACTGG	1 cut(s)	856
BseDI	CCNNGG	2 cut(s)	322, 900
BseGI	GGATG	2 cut(s)	633, 742
BseLI	CCNNNNNNNGG	3 cut(s)	236, 497, 498
BseMII	CTCAG	7 cut(s)	285, 297, 516, 756, 813, 845, 864
BseNI	ACTGG	1 cut(s)	856
BseXI	GCAGC	5 cut(s)	69, 72, 382, 790, 897
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	4 cut(s)	5, 596, 683, 899
BshNI	GGYRCC	2 cut(s)	50, 501
BsiSI	CCGG	4 cut(s)	54, 314, 597, 745
BslFI	GGGAC	2 cut(s)	605, 851
BslI	CCNNNNNNNGG	3 cut(s)	236, 497, 498
BsmAI	GTCTC	3 cut(s)	72, 117, 151
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	605, 851
BsnI	GGCC	4 cut(s)	5, 596, 683, 899
Bso31I	GGTCTC	2 cut(s)	117, 151
Bsp143I	GATC	5 cut(s)	199, 306, 408, 565, 579
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	4 cut(s)	5, 596, 683, 899
BspCNI	CTCAG	7 cut(s)	286, 296, 517, 757, 814, 844, 865
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	52, 291, 503
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	574
BspT107I	GGYRCC	2 cut(s)	50, 501
BspTNI	GGTCTC	2 cut(s)	117, 151
BsrFI	RCCGGY	2 cut(s)	313, 596
BsrI	ACTGG	1 cut(s)	856
BssAI	RCCGGY	2 cut(s)	313, 596
BssECI	CCNNGG	2 cut(s)	322, 900
BssMI	GATC	5 cut(s)	199, 306, 408, 565, 579
BssNI	GRCGYC	2 cut(s)	65, 618
BssT1I	CCWWGG	2 cut(s)	322, 900
Bst4CI	ACNGT	6 cut(s)	118, 367, 403, 481, 577, 629
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	2 cut(s)	65, 618
BstC8I	GCNNGC	2 cut(s)	37, 828
BstDEI	CTNAG	7 cut(s)	283, 294, 525, 765, 822, 831, 873
BstF5I	GGATG	2 cut(s)	633, 742
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	375, 751
BstKTI	GATC	5 cut(s)	202, 309, 411, 568, 582
BstMAI	GTCTC	3 cut(s)	72, 117, 151
BstMBI	GATC	5 cut(s)	199, 306, 408, 565, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 79, 233
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	53, 744
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	5 cut(s)	69, 72, 382, 790, 897
BstV2I	GAAGAC	2 cut(s)	35, 536
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	4 cut(s)	5, 596, 683, 899
BtsCI	GGATG	2 cut(s)	633, 742
BtsIMutI	CAGTG	2 cut(s)	573, 870
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	37, 828
CfoI	GCGC	2 cut(s)	375, 751
Cfr10I	RCCGGY	2 cut(s)	313, 596
Cfr13I	GGNCC	2 cut(s)	289, 599
CseI	GACGC	2 cut(s)	28, 54
Csp6I	GTAC	4 cut(s)	329, 502, 790, 859
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviAII	CATG	4 cut(s)	304, 439, 643, 728
CviQI	GTAC	4 cut(s)	329, 502, 790, 859
DdeI	CTNAG	7 cut(s)	283, 294, 525, 765, 822, 831, 873
DpnI	GATC	5 cut(s)	201, 308, 410, 567, 581
DpnII	GATC	5 cut(s)	199, 306, 408, 565, 579
EaeI	YGGCCR	2 cut(s)	3, 594
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	322, 900
Eco31I	GGTCTC	2 cut(s)	117, 151
Eco47I	GGWCC	2 cut(s)	289, 599
EcoO109I	RGGNCCY	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	322, 900
ErhI	CCWWGG	2 cut(s)	322, 900
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	4 cut(s)	307, 442, 646, 731
FaqI	GGGAC	2 cut(s)	605, 851
FatI	CATG	4 cut(s)	303, 438, 642, 727
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	6 cut(s)	49, 83, 86, 396, 804, 911
FokI	GGATG	2 cut(s)	620, 749
Fsp4HI	GCNGC	6 cut(s)	49, 83, 86, 396, 804, 911
FspBI	CTAG	2 cut(s)	182, 919
GlaI	GCGC	2 cut(s)	374, 750
GluI	GCNGC	6 cut(s)	49, 83, 86, 396, 804, 911
GsuI	CTGGAG	2 cut(s)	74, 597
HaeIII	GGCC	4 cut(s)	5, 596, 683, 899
HapII	CCGG	4 cut(s)	54, 314, 597, 745
HgaI	GACGC	2 cut(s)	28, 54
HhaI	GCGC	2 cut(s)	375, 751
Hin1I	GRCGYC	2 cut(s)	65, 618
Hin1II	CATG	4 cut(s)	307, 442, 646, 731
Hin6I	GCGC	2 cut(s)	373, 749
HinP1I	GCGC	2 cut(s)	373, 749
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	773
HpaII	CCGG	4 cut(s)	54, 314, 597, 745
HphI	GGTGA	2 cut(s)	143, 188
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	5 cut(s)	110, 122, 231, 286, 342
Hpy188III	TCNNGA	4 cut(s)	91, 472, 614, 821
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	6 cut(s)	88, 136, 206, 594, 612, 763
HpyCH4III	ACNGT	6 cut(s)	118, 367, 403, 481, 577, 629
HpyCH4IV	ACGT	3 cut(s)	258, 336, 618
HpyCH4V	TGCA	3 cut(s)	263, 697, 913
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 79, 233
HpyF3I	CTNAG	7 cut(s)	283, 294, 525, 765, 822, 831, 873
HpySE526I	ACGT	3 cut(s)	258, 336, 618
Hsp92I	GRCGYC	2 cut(s)	65, 618
Hsp92II	CATG	4 cut(s)	307, 442, 646, 731
HspAI	GCGC	2 cut(s)	373, 749
KpnI	GGTACC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	5 cut(s)	199, 306, 408, 565, 579
LmnI	GCTCC	2 cut(s)	93, 232
Lsp1109I	GCAGC	5 cut(s)	69, 72, 382, 790, 897
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	182, 919
MaeII	ACGT	3 cut(s)	258, 336, 618
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	5 cut(s)	201, 308, 410, 567, 581
MboI	GATC	5 cut(s)	199, 306, 408, 565, 579
MboII	GAAGA	3 cut(s)	40, 541, 563
MflI	RGATCY	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	542
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	9 cut(s)	164, 280, 292, 415, 520, 633, 680, 727, 848
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	369, 650
MslI	CAYNNNNRTG	2 cut(s)	575, 677
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	4 cut(s)	54, 314, 597, 745
MspR9I	CCNGG	2 cut(s)	55, 746
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	3 cut(s)	45, 79, 233
NciI	CCSGG	2 cut(s)	55, 746
NdeII	GATC	5 cut(s)	199, 306, 408, 565, 579
NlaIII	CATG	4 cut(s)	307, 442, 646, 731
NlaIV	GGNNCC	3 cut(s)	52, 291, 503
NspI	RCATGY	1 cut(s)	731
PciI	ACATGT	1 cut(s)	727
PfeI	GAWTC	1 cut(s)	773
PkrI	GCNGC	6 cut(s)	50, 84, 87, 397, 805, 912
PpuMI	RGGWCCY	1 cut(s)	289
PscI	ACATGT	1 cut(s)	727
Psp1406I	AACGTT	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	52, 291, 503
PspPI	GGNCC	2 cut(s)	289, 599
PspPPI	RGGWCCY	1 cut(s)	289
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	4 cut(s)	330, 503, 791, 860
RsaNI	GTAC	4 cut(s)	329, 502, 790, 859
RseI	CAYNNNNRTG	2 cut(s)	575, 677
SaqAI	TTAA	2 cut(s)	369, 650
SatI	GCNGC	6 cut(s)	49, 83, 86, 396, 804, 911
Sau3AI	GATC	5 cut(s)	199, 306, 408, 565, 579
Sau96I	GGNCC	2 cut(s)	289, 599
ScrFI	CCNGG	2 cut(s)	55, 746
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	289, 599
SmiMI	CAYNNNNRTG	2 cut(s)	575, 677
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	1 cut(s)	542
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	2 cut(s)	182, 919
StyD4I	CCNGG	2 cut(s)	53, 744
StyI	CCWWGG	2 cut(s)	322, 900
TaaI	ACNGT	6 cut(s)	118, 367, 403, 481, 577, 629
TaiI	ACGT	3 cut(s)	261, 339, 621
TaqI	TCGA	2 cut(s)	222, 407
TasI	AATT	1 cut(s)	542
TatI	WGTACW	1 cut(s)	858
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	2 cut(s)	369, 650
Tru9I	TTAA	2 cut(s)	369, 650
TscAI	CASTG	2 cut(s)	580, 877
TseI	GCWGC	5 cut(s)	82, 85, 395, 803, 910
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	2 cut(s)	580, 877
VpaK11BI	GGWCC	2 cut(s)	289, 599
XapI	RAATTY	1 cut(s)	542
XceI	RCATGY	1 cut(s)	731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XspI	CTAG	2 cut(s)	182, 919
ZraI	GACGTC	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.