pycom06g04090
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0010305
Physical Location & Seq
Forward (+)
5120522 .. 5122018
1497 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGGTGGTACCAGGTGGAGGTGCAGTTGAGTCCGCATTGTCTGTGTATTTGGAGAGTTTTGCTACAACATTAGGATCACGTGAGCAGTTGGCAATTGCTGAGTTTGCTGAAGCTTTGTTGATTATACCAAAGGTGCTTGCCGTCAATGCTGCCAAGGATTCTACAGATCTAGTTTCAATACTACGGGCCAACCACCACAGGGCACAAACCAAGGCAACAACCAAGACTGACAAGAAGGATAAGGATTATTCTAGCATGGGCTTAGACCTATTAAAGGGAGAAGTTCGTAACAACCTTGAAGCCGGAGTCATTGAGCCTGCAATGAGTAAAGTGAAGATAATTCAGTTTGCTACTGAAGCAGCTATTACCATTCTCCGAATTGATGACATGATCAGGCTAGTCAAGGATGAAAGTCAAGAGGGTTAA

Protein Analysis

142

Amino Acids

15.2

Weight (kDa)

5.42

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 2 - 132 2e-34 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 1 cut(s) 7
AciI CCGC 1 cut(s) 33
AclWI GGATC 1 cut(s) 82
AcuI CTGAAG 2 cut(s) 129, 375
AcvI CACGTG 1 cut(s) 80
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 3 cut(s) 17, 199, 274
AgsI TTSAA 2 cut(s) 177, 299
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 2 cut(s) 113, 362
AluI AGCT 2 cut(s) 113, 362
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 149, 359
Asp718I GGTACC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 7
BbrPI CACGTG 1 cut(s) 80
BbvI GCAGC 2 cut(s) 136, 371
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 12
BclI TGATCA 1 cut(s) 390
BfaI CTAG 3 cut(s) 170, 252, 398
BfmI CTRYAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 166
BisI GCNGC 2 cut(s) 150, 360
BlsI GCNGC 2 cut(s) 151, 361
Bme1390I CCNGG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 153, 210
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 199, 274
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 153, 210
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 3 cut(s) 17, 199, 274
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 2 cut(s) 136, 371
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 17, 199, 274
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 74, 166, 390
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 153, 210
BssMI GATC 3 cut(s) 74, 166, 390
BssT1I CCWWGG 2 cut(s) 153, 210
Bst2UI CCWGG 1 cut(s) 12
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 138, 318
BstDEI CTNAG 2 cut(s) 99, 262
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 3 cut(s) 77, 169, 393
BstMBI GATC 3 cut(s) 74, 166, 390
BstMWI GCNNNNNNNGC 3 cut(s) 104, 146, 356
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 136, 371
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 138, 318
Cfr13I GGNCC 1 cut(s) 186
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 256, 388
CviJI RGCY 7 cut(s) 113, 188, 261, 302, 316, 362, 397
CviKI_1 RGCY 7 cut(s) 113, 188, 261, 302, 316, 362, 397
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 99, 262
DpnI GATC 3 cut(s) 76, 168, 392
DpnII GATC 3 cut(s) 74, 166, 390
Eco130I CCWWGG 2 cut(s) 153, 210
Eco57I CTGAAG 2 cut(s) 129, 375
Eco72I CACGTG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 153, 210
ErhI CCWWGG 2 cut(s) 153, 210
FaeI CATG 2 cut(s) 259, 391
FaiI YATR 3 cut(s) 125, 257, 389
FatI CATG 2 cut(s) 255, 387
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 150, 360
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 150, 360
FspBI CTAG 3 cut(s) 170, 252, 398
GluI GCNGC 2 cut(s) 150, 360
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 303
Hin1II CATG 2 cut(s) 259, 391
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 3 cut(s) 29, 158, 306
HpaII CCGG 1 cut(s) 303
Hpy188I TCNGA 1 cut(s) 377
Hpy188III TCNNGA 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 23, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 146, 356
HpyF3I CTNAG 2 cut(s) 99, 262
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 259, 391
KpnI GGTACC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 3 cut(s) 74, 166, 390
LpnPI CCDG 5 cut(s) 24, 184, 316, 330, 379
Lsp1109I GCAGC 2 cut(s) 136, 371
MabI ACCWGGT 1 cut(s) 10
MaeI CTAG 3 cut(s) 170, 252, 398
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 76, 168, 392
MboI GATC 3 cut(s) 74, 166, 390
MboII GAAGA 1 cut(s) 346
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 3 cut(s) 93, 339, 378
MlyI GAGTC 2 cut(s) 38, 315
MnlI CCTC 2 cut(s) 11, 412
MseI TTAA 2 cut(s) 272, 424
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 104, 146, 356
NdeII GATC 3 cut(s) 74, 166, 390
NlaIII CATG 2 cut(s) 259, 391
NlaIV GGNNCC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 151, 361
PleI GAGTC 2 cut(s) 37, 314
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
PpsI GAGTC 2 cut(s) 37, 314
Ppu21I YACGTR 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 10
PspCI CACGTG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 272, 424
SatI GCNGC 2 cut(s) 150, 360
Sau3AI GATC 3 cut(s) 74, 166, 390
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 2 cut(s) 38, 315
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 205
SetI ASST 8 cut(s) 16, 22, 82, 115, 135, 270, 297, 364
SexAI ACCWGGT 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 162
Sse9I AATT 3 cut(s) 93, 339, 378
SsiI CCGC 1 cut(s) 33
SspMI CTAG 3 cut(s) 170, 252, 398
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 2 cut(s) 153, 210
TaiI ACGT 1 cut(s) 82
TasI AATT 3 cut(s) 93, 339, 378
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 272, 424
Tru9I TTAA 2 cut(s) 272, 424
TseI GCWGC 2 cut(s) 149, 359
TspDTI ATGAA 1 cut(s) 423
XagI CCTNNNNNAGG 1 cut(s) 272
XspI CTAG 3 cut(s) 170, 252, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.