Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Forward (+)

5475977 .. 5479251

Gene Structure 3275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTACTTTCGACGAAGCCCCGTCGGCTAAGAGATGGCTTCCTCTCGAAGCTAACCCTGATGTTATGAACCAGTTCCTTTGGGGCCTGGGTCTTCAAGAGGATGAGGCAGAATGCTTTGATGTTTACGGGTTGGATGGAGAACTCTTAGAAATGGTTCCGAAGCCTGTACTTGCTGTCCTGTTTCTTTATCCTCTAACCGCAAAGACTGAAGAAGAGAGAATGATGCAGGCAAATGAAAAACAGGAACCCAAGGGTAGTGTTTATTTTATGAAACAAACTGTGGGCAATGCTTGTGGAACTATTGGGCTTCTTCATGCTGTTGGAAATATCACGTCAGAGATCAAACTTGTTGAGGATTCATTCTTGGATAGGTTTTTCAAAAAAACTGCAAGCATGGATCCATTGCAGGCATCTGACAATGTGGACACTCACTTTATTTGCTTTGCATGCGTGGACGGGGAGCTTTATGAGCTTGATGGGAGGAAGTCAGGTCCAATCTCTCACGGTCCATCTTCACCAGATAGTTTATTGCAGGATGCAGCTAAAGTCATACAGGGCATGATCCAGAAAAATCCCGACTCCCTCAACTTCAATGTGATTGCAATTTCAAAGAAATCCGGTGGGTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

212

Amino Acids

23.2

Weight (kDa)

4.59

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	13 - 136	4.5e-38	Ubiquitin carboxyl-terminal hydrolase, family 1
Peptidase_C12	PF01088	139 - 190	3.5e-15	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	3 cut(s)	395, 408, 559
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	98, 382, 595, 612
AjiI	CACGTC	1 cut(s)	336
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	4 cut(s)	53, 466, 475, 545
AluI	AGCT	4 cut(s)	53, 466, 475, 545
AlwI	GGATC	3 cut(s)	395, 408, 559
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	542
Asp700I	GAANNNNTTC	2 cut(s)	74, 156
AspS9I	GGNCC	3 cut(s)	85, 494, 509
AsuHPI	GGTGA	1 cut(s)	510
AvaII	GGWCC	2 cut(s)	494, 509
BamHI	GGATCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	4 cut(s)	30, 131, 473, 520
BciT130I	CCWGG	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	2 cut(s)	494, 509
BmgBI	CACGTC	1 cut(s)	336
BmgT120I	GGNCC	3 cut(s)	85, 494, 509
BmiI	GGNNCC	4 cut(s)	86, 159, 249, 402
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	3 cut(s)	216, 422, 529
BpiI	GAAGAC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	88, 252
BsaWI	WCCGGW	1 cut(s)	620
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	2 cut(s)	295, 404
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	88, 252
BseGI	GGATG	3 cut(s)	109, 142, 544
BseMI	GCAATG	2 cut(s)	295, 404
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	554
BshFI	GGCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	621
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	342, 400, 564
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	86, 159, 249, 402
BspPI	GGATC	3 cut(s)	395, 408, 559
BsrDI	GCAATG	2 cut(s)	295, 404
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	88, 252
BssMI	GATC	3 cut(s)	342, 400, 564
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	283, 509
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	4 cut(s)	231, 394, 411, 451
BstDEI	CTNAG	2 cut(s)	30, 148
BstF5I	GGATG	3 cut(s)	109, 142, 544
BstKTI	GATC	3 cut(s)	345, 403, 567
BstMBI	GATC	3 cut(s)	342, 400, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 450, 472
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	554
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	336
BtsCI	GGATG	3 cut(s)	109, 142, 544
Cac8I	GCNNGC	4 cut(s)	231, 394, 411, 451
Cfr13I	GGNCC	3 cut(s)	85, 494, 509
Csp6I	GTAC	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	317, 397, 450, 562
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	2 cut(s)	30, 148
DpnI	GATC	3 cut(s)	344, 402, 566
DpnII	GATC	3 cut(s)	342, 400, 564
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	494, 509
Eco57I	CTGAAG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	4 cut(s)	320, 400, 453, 565
FaiI	YATR	8 cut(s)	68, 272, 318, 398, 451, 471, 554, 563
FatI	CATG	4 cut(s)	316, 396, 449, 561
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	3 cut(s)	116, 149, 551
Fsp4HI	GCNGC	1 cut(s)	543
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	621
Hin1II	CATG	4 cut(s)	320, 400, 453, 565
HinfI	GANTC	2 cut(s)	359, 581
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	1 cut(s)	510
Hpy166II	GTNNAC	3 cut(s)	127, 427, 457
Hpy188I	TCNGA	3 cut(s)	162, 340, 418
Hpy188III	TCNNGA	4 cut(s)	47, 98, 568, 578
Hpy8I	GTNNAC	3 cut(s)	127, 427, 457
Hpy99I	CGWCG	2 cut(s)	17, 28
HpyCH4III	ACNGT	2 cut(s)	283, 509
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	7 cut(s)	229, 392, 409, 449, 535, 542, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 450, 472
HpyF3I	CTNAG	2 cut(s)	30, 148
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	320, 400, 453, 565
Kzo9I	GATC	3 cut(s)	342, 400, 564
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	3 cut(s)	216, 422, 529
MaeII	ACGT	1 cut(s)	335
MalI	GATC	3 cut(s)	344, 402, 566
MboI	GATC	3 cut(s)	342, 400, 564
MboII	GAAGA	5 cut(s)	86, 224, 227, 305, 507
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	2 cut(s)	114, 304
MnlI	CCTC	7 cut(s)	54, 94, 100, 204, 349, 477, 596
MroXI	GAANNNNTTC	2 cut(s)	74, 156
MseI	TTAA	1 cut(s)	634
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	26, 450, 472
NdeII	GATC	3 cut(s)	342, 400, 564
NlaIII	CATG	4 cut(s)	320, 400, 453, 565
NlaIV	GGNNCC	4 cut(s)	86, 159, 249, 402
NspI	RCATGY	1 cut(s)	453
PaeI	GCATGC	1 cut(s)	453
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	74, 156
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	4 cut(s)	86, 159, 249, 402
PspPI	GGNCC	3 cut(s)	85, 494, 509
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	634
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	3 cut(s)	342, 400, 564
Sau96I	GGNCC	3 cut(s)	85, 494, 509
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	7 cut(s)	55, 338, 377, 468, 477, 496, 547
SfaNI	GCATC	3 cut(s)	216, 422, 529
SinI	GGWCC	2 cut(s)	494, 509
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	1 cut(s)	606
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	283, 509
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	12, 48
TasI	AATT	1 cut(s)	606
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	634
Tru9I	TTAA	1 cut(s)	634
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	83, 252, 287, 305, 351
VpaK11BI	GGWCC	2 cut(s)	494, 509
XceI	RCATGY	1 cut(s)	453
XmnI	GAANNNNTTC	2 cut(s)	74, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.