pycom06g05560

Lipid transfer-like protein VAS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013181
Physical Location & Seq
Reverse (-)
8313788 .. 8315996
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGGGCAGCTATAGCATTTCCAAGTTGGCGATGGCCACGGTGGTTGTGTTGTTAGGCATGGTAAGTTTGGTCGGACCGTCAGCCGGTCAAACGACCCCTGCTTGTGCTCAGGACCTGGTGCCCTGCGCTGACTACCTCAAGAACACAGCTCAGCCAGCTGCCAACTGCTGCACCGCCATCAAGCAGGCGGTGGCCACCCAGTTTGTGTGTCTCTGCAACCTCTTTTTCACTCCCGGACTCCTTGAGACTTTTGGCGGCAACGCCACTTCCGGTCTCAGAATCGCCACCGCTTGCGGCGAATCAATGGATAACGCCAAATGCAAAGCTGCCATAGGTGCTCCTACACCAGAATCCACACCTGGAACCCCTGGAACACCGGGAAATGACGGTAGCGGTTCCGGCAAGGTTGAGTGGACTGGATTTTCTGCTCTGCTCTTATTATGGGCTTCTGTCATGTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

155

Amino Acids

15.55

Weight (kDa)

5.13

Isoelectric Point (pI)

28.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 21 - 107 1.3e-12 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AciI CCGC 6 cut(s) 174, 188, 255, 288, 294, 393
AcoI YGGCCR 2 cut(s) 33, 192
AfiI CCNNNNNNNGG 1 cut(s) 83
AjnI CCWGG 3 cut(s) 114, 358, 367
AluBI AGCT 4 cut(s) 9, 149, 158, 326
AluI AGCT 4 cut(s) 9, 149, 158, 326
Alw21I GWGCWC 2 cut(s) 109, 340
Alw26I GTCTC 3 cut(s) 215, 239, 278
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 2 cut(s) 33, 192
ApeKI GCWGC 4 cut(s) 6, 158, 168, 326
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 74, 112
AsuC2I CCSGG 2 cut(s) 234, 378
AvaII GGWCC 2 cut(s) 74, 112
BaeGI GKGCMC 1 cut(s) 123
BalI TGGCCA 2 cut(s) 35, 194
BanI GGYRCC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 109, 340
BbvI GCAGC 4 cut(s) 18, 145, 155, 313
BccI CCATC 2 cut(s) 25, 185
BciT130I CCWGG 3 cut(s) 116, 360, 369
BcnI CCSGG 2 cut(s) 234, 378
BcoDI GTCTC 3 cut(s) 215, 239, 278
BfmI CTRYAG 1 cut(s) 10
BisI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 6 cut(s) 8, 160, 170, 257, 296, 328
Bme1390I CCNGG 5 cut(s) 116, 234, 360, 369, 378
Bme18I GGWCC 2 cut(s) 74, 112
BmgT120I GGNCC 2 cut(s) 74, 112
BmiI GGNNCC 3 cut(s) 120, 364, 397
BmrFI CCNGG 5 cut(s) 116, 234, 360, 369, 378
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 122, 263
BpuMI CCSGG 2 cut(s) 234, 378
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 36, 367
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 199, 421
BseBI CCWGG 3 cut(s) 116, 360, 369
BseDI CCNNGG 2 cut(s) 36, 367
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 3 cut(s) 122, 164, 289
BseNI ACTGG 2 cut(s) 199, 421
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 4 cut(s) 18, 145, 155, 313
BsgI GTGCAG 1 cut(s) 154
BshFI GGCC 2 cut(s) 35, 194
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 109, 340
BsiSI CCGG 5 cut(s) 84, 234, 270, 377, 399
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 3 cut(s) 215, 239, 278
BsnI GGCC 2 cut(s) 35, 194
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 109, 123, 340
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 6 cut(s) 174, 188, 255, 288, 294, 393
BspANI GGCC 2 cut(s) 35, 194
BspCNI CTCAG 3 cut(s) 121, 163, 288
BspLI GGNNCC 3 cut(s) 120, 364, 397
BspT107I GGYRCC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 199, 421
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 36, 367
Bst2UI CCWGG 3 cut(s) 116, 360, 369
Bst4CI ACNGT 3 cut(s) 40, 78, 389
BstC8I GCNNGC 3 cut(s) 156, 186, 292
BstDEI CTNAG 3 cut(s) 108, 150, 275
BstDSI CCRYGG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 128
BstMAI GTCTC 3 cut(s) 215, 239, 278
BstMWI GCNNNNNNNGC 4 cut(s) 12, 155, 335, 399
BstNI CCWGG 3 cut(s) 116, 360, 369
BstSCI CCNGG 5 cut(s) 114, 232, 358, 367, 376
BstSFI CTRYAG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 18, 145, 155, 313
BsuRI GGCC 2 cut(s) 35, 194
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 44
Cac8I GCNNGC 3 cut(s) 156, 186, 292
CaiI CAGNNNCTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 74, 112
CpoI CGGWCCG 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 114
CspCI CAANNNNNGTGG 4 cut(s) 25, 60, 184, 219
CspI CGGWCCG 1 cut(s) 74
CviAII CATG 2 cut(s) 58, 454
CviJI RGCY 9 cut(s) 9, 35, 83, 149, 154, 158, 194, 326, 446
CviKI_1 RGCY 9 cut(s) 9, 35, 83, 149, 154, 158, 194, 326, 446
DdeI CTNAG 3 cut(s) 108, 150, 275
EaeI YGGCCR 2 cut(s) 33, 192
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 74, 112
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 114, 358, 367
FaeI CATG 2 cut(s) 61, 457
FaiI YATR 6 cut(s) 12, 59, 332, 442, 455, 460
FatI CATG 2 cut(s) 57, 453
Fnu4HI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
Fsp4HI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
GlaI GCGC 1 cut(s) 127
GluI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
HaeIII GGCC 2 cut(s) 35, 194
HapII CCGG 5 cut(s) 84, 234, 270, 377, 399
HhaI GCGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 61, 457
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 4 cut(s) 237, 279, 299, 350
HpaII CCGG 5 cut(s) 84, 234, 270, 377, 399
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 74, 278
Hpy188III TCNNGA 2 cut(s) 110, 139
Hpy8I GTNNAC 1 cut(s) 414
HpyCH4III ACNGT 3 cut(s) 40, 78, 389
HpyCH4V TGCA 3 cut(s) 171, 216, 321
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 155, 335, 399
HpyF3I CTNAG 3 cut(s) 108, 150, 275
Hsp92II CATG 2 cut(s) 61, 457
HspAI GCGC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 4 cut(s) 18, 145, 155, 313
MabI ACCWGGT 1 cut(s) 114
MhlI GDGCHC 3 cut(s) 109, 123, 340
MlsI TGGCCA 2 cut(s) 35, 194
MluNI TGGCCA 2 cut(s) 35, 194
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 2 cut(s) 146, 230
Mox20I TGGCCA 2 cut(s) 35, 194
MscI TGGCCA 2 cut(s) 35, 194
Msp20I TGGCCA 2 cut(s) 35, 194
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 5 cut(s) 84, 234, 270, 377, 399
MspR9I CCNGG 5 cut(s) 116, 234, 360, 369, 378
MvaI CCWGG 3 cut(s) 116, 360, 369
MwoI GCNNNNNNNGC 4 cut(s) 12, 155, 335, 399
NciI CCSGG 2 cut(s) 234, 378
NlaIII CATG 2 cut(s) 61, 457
NlaIV GGNNCC 3 cut(s) 120, 364, 397
PfeI GAWTC 3 cut(s) 279, 299, 350
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 6 cut(s) 8, 160, 170, 257, 296, 328
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 114, 358, 367
PspGI CCWGG 3 cut(s) 114, 358, 367
PspN4I GGNNCC 3 cut(s) 120, 364, 397
PspPI GGNCC 2 cut(s) 74, 112
PspPPI RGGWCCY 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 158
Rsr2I CGGWCCG 1 cut(s) 74
RsrII CGGWCCG 1 cut(s) 74
SatI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
Sau96I GGNCC 2 cut(s) 74, 112
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 5 cut(s) 116, 234, 360, 369, 378
SduI GDGCHC 3 cut(s) 109, 123, 340
SexAI ACCWGGT 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 2 cut(s) 74, 112
SmlI CTYRAG 2 cut(s) 137, 242
SmoI CTYRAG 2 cut(s) 137, 242
SsiI CCGC 6 cut(s) 174, 188, 255, 288, 294, 393
StyD4I CCNGG 5 cut(s) 114, 232, 358, 367, 376
TaaI ACNGT 3 cut(s) 40, 78, 389
TauI GCSGC 2 cut(s) 258, 297
TfiI GAWTC 3 cut(s) 279, 299, 350
TseI GCWGC 4 cut(s) 6, 158, 168, 326
VpaK11BI GGWCC 2 cut(s) 74, 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.