pycom06g07630

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0007770
Physical Location & Seq
Forward (+)
12475104 .. 12476506
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGCAGTCAAGGGAAAGTACAGCAGCTACGGTGTTGCATGAAACTGGTGCAGTTCTTCTCCATCCTTACAATGACAGGCGCATAATAAGTGGGCAGGGTACCATTTCACTGGAGCTTCTGGAGCAACAAGTTCCACAGTTAGACGGCATTATAGTACCCATAAGTGGAGGTGGCTTGATATCAGGGGTGGCTTTGGCTGCCAAGTCCATCAACCCTGCGATTCGAATTTTTGCAGCTGAACCTGAGGGTGCTAACGATGCAGCTCAATCCAAATCAGCTGGGAGGATAATAACATTGCCTGAGACCAACACTGTTGCAGATGGGCTTCGAGCTTTTCTTGGAGACCTTACTTGGCCCATTGTAAGAGATCTTGTCGATGGCGTTATAACTGTAAATGACGAGGAGATAATAAATGCTATGAAACTCTGTTACGAGATTTTGAAGGTTGCAGTAGAACCCAGTGGAGCAATAGGCCTTGCTGCTGTTTTGTCCAAAAGTTTCAAGAAAAATTCTGCTTGGAAGGATTGCAGCAACATCGGAATTATACTTTCTGGAGGTAATGTAGATCTAGGCATCCTATGGGATGCCTACAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

200

Amino Acids

21.0

Weight (kDa)

5.05

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 4 - 185 7e-41 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
Acc65I GGTACC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 225, 508
AfaI GTAC 3 cut(s) 19, 100, 156
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 442, 502
AluBI AGCT 6 cut(s) 26, 115, 236, 263, 278, 332
AluI AGCT 6 cut(s) 26, 115, 236, 263, 278, 332
Alw26I GTCTC 2 cut(s) 296, 336
AoxI GGCC 2 cut(s) 353, 472
ApeKI GCWGC 6 cut(s) 23, 197, 233, 260, 479, 528
ApoI RAATTY 2 cut(s) 225, 508
Asp718I GGTACC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 354
AsuII TTCGAA 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 243
BanI GGYRCC 1 cut(s) 98
BbvI GCAGC 6 cut(s) 35, 184, 245, 272, 466, 540
BccI CCATC 4 cut(s) 69, 215, 314, 371
BceAI ACGGC 1 cut(s) 160
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BcoDI GTCTC 2 cut(s) 296, 336
BfaI CTAG 1 cut(s) 569
BglII AGATCT 2 cut(s) 367, 565
BisI GCNGC 6 cut(s) 24, 198, 234, 261, 480, 529
BlsI GCNGC 6 cut(s) 25, 199, 235, 262, 481, 530
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 100
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 3 cut(s) 247, 574, 582
BmuI ACTGGG 1 cut(s) 453
BpmI CTGGAG 3 cut(s) 131, 140, 573
Bpu14I TTCGAA 1 cut(s) 223
BsaI GGTCTC 2 cut(s) 296, 336
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 49, 114, 459
Bse21I CCTNAGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 293
BseGI GGATG 3 cut(s) 61, 573, 589
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 2 cut(s) 234, 291
BseNI ACTGG 3 cut(s) 49, 114, 459
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 6 cut(s) 35, 184, 245, 272, 466, 540
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 2 cut(s) 355, 474
BshNI GGYRCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 296, 336
BsnI GGCC 2 cut(s) 355, 474
Bso31I GGTCTC 2 cut(s) 296, 336
Bsp119I TTCGAA 1 cut(s) 223
Bsp143I GATC 2 cut(s) 367, 565
BspANI GGCC 2 cut(s) 355, 474
BspCNI CTCAG 2 cut(s) 235, 292
BspLI GGNNCC 1 cut(s) 100
BspT104I TTCGAA 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 2 cut(s) 296, 336
BsrDI GCAATG 1 cut(s) 293
BsrI ACTGG 3 cut(s) 49, 114, 459
BssMI GATC 2 cut(s) 367, 565
Bst4CI ACNGT 4 cut(s) 31, 138, 313, 391
BstBI TTCGAA 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 243, 300
BstF5I GGATG 3 cut(s) 61, 573, 589
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 2 cut(s) 370, 568
BstMAI GTCTC 2 cut(s) 296, 336
BstMBI GATC 2 cut(s) 367, 565
BstMWI GCNNNNNNNGC 3 cut(s) 121, 197, 257
BstV1I GCAGC 6 cut(s) 35, 184, 245, 272, 466, 540
BstX2I RGATCY 2 cut(s) 367, 565
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 2 cut(s) 367, 565
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 2 cut(s) 355, 474
BtsCI GGATG 3 cut(s) 61, 573, 589
BtsIMutI CAGTG 3 cut(s) 107, 309, 466
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 354
Csp6I GTAC 3 cut(s) 18, 99, 155
CviAII CATG 1 cut(s) 38
CviQI GTAC 3 cut(s) 18, 99, 155
DdeI CTNAG 2 cut(s) 243, 300
DpnI GATC 2 cut(s) 369, 567
DpnII GATC 2 cut(s) 367, 565
Eco147I AGGCCT 1 cut(s) 474
Eco31I GGTCTC 2 cut(s) 296, 336
Eco32I GATATC 1 cut(s) 180
Eco81I CCTNAGG 1 cut(s) 243
EcoRV GATATC 1 cut(s) 180
FaeI CATG 1 cut(s) 41
FaiI YATR 8 cut(s) 39, 83, 152, 161, 386, 419, 545, 580
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 6 cut(s) 24, 198, 234, 261, 480, 529
FokI GGATG 3 cut(s) 48, 560, 596
Fsp4HI GCNGC 6 cut(s) 24, 198, 234, 261, 480, 529
FspBI CTAG 1 cut(s) 569
GlaI GCGC 1 cut(s) 80
GluI GCNGC 6 cut(s) 24, 198, 234, 261, 480, 529
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 3 cut(s) 131, 140, 573
HaeIII GGCC 2 cut(s) 355, 474
HhaI GCGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 539
Hpy188III TCNNGA 3 cut(s) 119, 502, 552
HpyAV CCTTC 2 cut(s) 436, 514
HpyCH4III ACNGT 4 cut(s) 31, 138, 313, 391
HpyCH4V TGCA 8 cut(s) 4, 37, 50, 233, 260, 317, 449, 528
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 197, 257
HpyF3I CTNAG 2 cut(s) 243, 300
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 79
KpnI GGTACC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 367, 565
LmnI GCTCC 3 cut(s) 112, 121, 464
Lsp1109I GCAGC 6 cut(s) 35, 184, 245, 272, 466, 540
LweI GCATC 3 cut(s) 247, 574, 582
MaeI CTAG 1 cut(s) 569
MaeIII GTNAC 1 cut(s) 428
MalI GATC 2 cut(s) 369, 567
MboI GATC 2 cut(s) 367, 565
MboII GAAGA 1 cut(s) 47
MflI RGATCY 2 cut(s) 367, 565
MluCI AATT 3 cut(s) 225, 508, 540
MnlI CCTC 5 cut(s) 161, 238, 276, 394, 548
MspA1I CMGCKG 2 cut(s) 236, 278
MwoI GCNNNNNNNGC 3 cut(s) 121, 197, 257
NdeII GATC 2 cut(s) 367, 565
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 100
NspV TTCGAA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 474
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 6 cut(s) 25, 199, 235, 262, 481, 530
PsiI TTATAA 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 2 cut(s) 367, 565
PvuII CAGCTG 2 cut(s) 236, 278
RsaI GTAC 3 cut(s) 19, 100, 156
RsaNI GTAC 3 cut(s) 18, 99, 155
SatI GCNGC 6 cut(s) 24, 198, 234, 261, 480, 529
Sau3AI GATC 2 cut(s) 367, 565
Sau96I GGNCC 1 cut(s) 354
SfaNI GCATC 3 cut(s) 247, 574, 582
SfuI TTCGAA 1 cut(s) 223
Sse9I AATT 3 cut(s) 225, 508, 540
SseBI AGGCCT 1 cut(s) 474
SspMI CTAG 1 cut(s) 569
StuI AGGCCT 1 cut(s) 474
TaaI ACNGT 4 cut(s) 31, 138, 313, 391
TaqI TCGA 3 cut(s) 223, 328, 375
TasI AATT 3 cut(s) 225, 508, 540
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 3 cut(s) 114, 316, 466
TseI GCWGC 6 cut(s) 23, 197, 233, 260, 479, 528
TspDTI ATGAA 2 cut(s) 54, 434
TspRI CASTG 3 cut(s) 114, 316, 466
XapI RAATTY 2 cut(s) 225, 508
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.