Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013664

Physical Location & Seq

Genomic Coordinates Reverse (-)

15459178 .. 15462700

Gene Structure 3523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCTACCGTACAACTCTTCTCATTATTCTTACTTTTCTTGATCTTCTTCGTCCATCCAACAAGGGTTTCTTCCATCTGCCCTACATCAAACTGCTCCGACGGACCGCCGGTCCGATTCCCTTTCCGGCTTCGAAACGTCCAACCCTCACGATGTGGGTACAATCCAGGGTTTGACCTCTCGTGCAGCAACCAAACCCTGATCACAACACTCAGCCTCCCAGCCGCTACCGACAACTTCATAGTCCAACTCATCGATTACGAGTTTCAAACGCTTTACATCAACGACCCCAACCGCTGCCTCCCCAAACGTTTCCTAGACAACGTCTTCAAGCTCCAAGGCACGCCGTTTCACATCGAAAGTTTCAAGAACCTCACCTTCCTCAACTGCTCCTCTCAGGCACGAGAAAGCCAAGCGACGTTGTTACCCGTCATGGCCGCGAGTATTTCATGTCTCAGCACTAAAAATCACACGGTCTTTGCTGTTCCGTCGAGGGCGTATGAAGAATGGCTTCAGTCAACGTCATCTTGGTCAACTTCGCCGTCACCGTCACCATCACCGTCACCGTCACCATCACCGTCACCGTCAGAGGCTTTGTGTCCGGTGATTTCGAGTGTTTCGGTTCCGAGTACAGCTGCTAATGAGATGCTGGATATGTTTGGGGATGTTAGGAGTGGTGTTGGGTTGACTTGGTCAACGCCTGATTGTCGTGATTGTGAAGCCCGTGGTGGAGATTGTGGGTTTAAAGGAGATACTCATCGGGTTGTGTGCTCGAATATTCCCGTGGCTAAGAGGGAAGCTCTTCCAAGAAGTGCAAAATATGGCATGATCGTAGGTGTGGGAATACCCGGACTCTTATGCATCATTGGACTCGCAAGTTATGTCTTCGGCAGGATAAAGGCTTGCGGTCGTCGCCACCAACCAACTGTGGACCTCTCTACCTTAGCGTCTTGGCAACCTGCCTTCGTCACGGTAGGGCTTGATGGCCCAACCATTCAATCGTACCCTAAGACTTTTCTCGGGGAGAGCAAGAGATTGCCCAAGCCCAACGACAGTACGTGCTCAATATGTCTAAGTGAGTACGAGGCCAAGGAAGCGTTGAGGACTATACCAGAGTGTAACCATTACTTCCATGCTAGTTGCATAGACGAGTGGCTTAAAATGAATGCAACATGCCCCGTTTGTCGAAATTCACCAGAGGGCTCATCTCTTGCTACCCCTTCTTCCTCAGTGTCTTCATCAACATTTTCTTTAGCATCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

422

Amino Acids

45.75

Weight (kDa)

7.78

Isoelectric Point (pI)

63.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	27 - 96	7.9e-15	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	199 - 257	1.7e-06	Wall-associated receptor kinase C-terminal
zf-rbx1	PF12678	351 - 396	3.3e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	353 - 396	1.8e-14	Ring finger domain
zf-RING_11	PF17123	354 - 382	3.3e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	354 - 395	5.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	354 - 395	6.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	354 - 393	5.3e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04580
malus_domestica	MD06G1106800.v1.1 MD14G1128800.v1.1
prunus_persica	Prupe.5G120000_v2.0.a1
pyrus_communis	pycom06g10100
rosa_chinensis	RchiOBHm_Chr7g0194801 RchiOBHm_Chr7g0194811
rosa_laevigata	RLG00000004167
rosa_multiflora	Rmu_co8285291.1_g000001 Rmu_sc0006960.1_g000001 Rmu_sc0036266.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260970
rosa_rugosa	Rorug07G0018500.1
rosa_samantha	Rh7AG146200 Rh7BG146200 Rh7CG150100 Rh7DG147500
rosa_wichuraiana	Rw7G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	967
AccII	CGCG	1 cut(s)	440
AciI	CCGC	5 cut(s)	107, 225, 295, 438, 906
AclI	AACGTT	1 cut(s)	310
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	1189
AcuI	CTGAAG	1 cut(s)	497
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	6 cut(s)	12, 161, 631, 1004, 1057, 1082
AgsI	TTSAA	4 cut(s)	269, 331, 367, 998
AhdI	GACNNNNNGTC	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	3 cut(s)	334, 635, 800
AluI	AGCT	3 cut(s)	334, 635, 800
Alw21I	GWGCWC	2 cut(s)	773, 1064
Alw26I	GTCTC	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	1019
AoxI	GGCC	3 cut(s)	435, 985, 1086
ApeKI	GCWGC	3 cut(s)	186, 297, 635
ApoI	RAATTY	1 cut(s)	1189
Asp700I	GAANNNNTTC	2 cut(s)	510, 801
AspS9I	GGNCC	4 cut(s)	104, 112, 931, 986
AsuC2I	CCSGG	1 cut(s)	849
AsuII	TTCGAA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	1019
AvaII	GGWCC	3 cut(s)	104, 112, 931
BanII	GRGCYC	1 cut(s)	1205
BauI	CACGAG	2 cut(s)	181, 402
BbsI	GAAGAC	3 cut(s)	319, 877, 1227
Bbv12I	GWGCWC	2 cut(s)	773, 1064
BbvI	GCAGC	3 cut(s)	198, 284, 622
BccI	CCATC	5 cut(s)	63, 83, 562, 580, 977
BceAI	ACGGC	2 cut(s)	331, 526
BciT130I	CCWGG	1 cut(s)	168
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	317, 1137
BfuAI	ACCTGC	1 cut(s)	967
BisI	GCNGC	5 cut(s)	187, 225, 298, 438, 636
BlsI	GCNGC	5 cut(s)	188, 226, 299, 439, 637
Bme1390I	CCNGG	2 cut(s)	168, 849
Bme18I	GGWCC	3 cut(s)	104, 112, 931
BmeRI	GACNNNNNGTC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	1019
BmgT120I	GGNCC	4 cut(s)	104, 112, 931, 986
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	2 cut(s)	168, 849
BmsI	GCATC	2 cut(s)	636, 870
BpiI	GAAGAC	3 cut(s)	319, 877, 1227
BplI	GAGNNNNNCTC	2 cut(s)	784, 816
Bpu10I	CCTNAGC	1 cut(s)	943
Bpu14I	TTCGAA	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	849
Bsa29I	ATCGAT	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	1059
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	5 cut(s)	167, 337, 724, 783, 1089
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bse118I	RCCGGY	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	5 cut(s)	167, 337, 724, 783, 1089
BseGI	GGATG	2 cut(s)	55, 670
BseJI	GATNNNNATC	1 cut(s)	756
BseMII	CTCAG	4 cut(s)	226, 410, 469, 1242
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	198, 284, 622
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	440
Bsh1285I	CGRYCG	1 cut(s)	910
BshFI	GGCC	3 cut(s)	437, 987, 1088
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	910
BsiHKAI	GWGCWC	2 cut(s)	773, 1064
BsiHKCI	CYCGRG	1 cut(s)	1019
BsiSI	CCGG	4 cut(s)	110, 127, 602, 849
BsmAI	GTCTC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	1171
BsnI	GGCC	3 cut(s)	437, 987, 1088
BsoBI	CYCGRG	1 cut(s)	1019
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	3 cut(s)	773, 1064, 1205
Bsp143I	GATC	3 cut(s)	42, 201, 828
BspACI	CCGC	5 cut(s)	107, 225, 295, 438, 906
BspANI	GGCC	3 cut(s)	437, 987, 1088
BspCNI	CTCAG	4 cut(s)	225, 409, 468, 1241
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	967
BspQI	GCTCTTC	1 cut(s)	807
BspT104I	TTCGAA	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	5 cut(s)	167, 337, 724, 783, 1089
BssMI	GATC	3 cut(s)	42, 201, 828
BssSI	CACGAG	2 cut(s)	181, 402
BssT1I	CCWWGG	2 cut(s)	337, 1089
Bst2BI	CACGAG	2 cut(s)	181, 402
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	2 cut(s)	23, 807
BstBAI	YACGTR	1 cut(s)	1059
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	344, 904
BstDEI	CTNAG	8 cut(s)	212, 396, 455, 789, 943, 1008, 1073, 1228
BstDSI	CCRYGG	2 cut(s)	724, 783
BstF5I	GGATG	2 cut(s)	55, 670
BstFNI	CGCG	1 cut(s)	440
BstKTI	GATC	3 cut(s)	45, 204, 831
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	3 cut(s)	42, 201, 828
BstMCI	CGRYCG	1 cut(s)	910
BstMWI	GCNNNNNNNGC	2 cut(s)	912, 1094
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	1176
BstSCI	CCNGG	2 cut(s)	166, 847
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	3 cut(s)	198, 284, 622
BstV2I	GAAGAC	3 cut(s)	319, 877, 1227
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	437, 987, 1088
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	724, 783
BtsCI	GGATG	2 cut(s)	55, 670
BtsIMutI	CAGTG	1 cut(s)	1236
BveI	ACCTGC	1 cut(s)	967
Cac8I	GCNNGC	2 cut(s)	344, 904
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	4 cut(s)	104, 112, 931, 986
ClaI	ATCGAT	1 cut(s)	255
CpoI	CGGWCCG	2 cut(s)	104, 112
CseI	GACGC	1 cut(s)	936
Csp6I	GTAC	6 cut(s)	11, 160, 630, 1003, 1056, 1081
CspI	CGGWCCG	2 cut(s)	104, 112
CviAII	CATG	5 cut(s)	433, 450, 826, 1133, 1173
CviQI	GTAC	6 cut(s)	11, 160, 630, 1003, 1056, 1081
DdeI	CTNAG	8 cut(s)	212, 396, 455, 789, 943, 1008, 1073, 1228
DpnI	GATC	3 cut(s)	44, 203, 830
DpnII	GATC	3 cut(s)	42, 201, 828
DraI	TTTAAA	1 cut(s)	745
DraIII	CACNNNGTG	1 cut(s)	155
DriI	GACNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	23, 807
Eam1105I	GACNNNNNGTC	1 cut(s)	110
EarI	CTCTTC	2 cut(s)	23, 807
Eco130I	CCWWGG	2 cut(s)	337, 1089
Eco24I	GRGCYC	1 cut(s)	1205
Eco47I	GGWCC	3 cut(s)	104, 112, 931
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	1019
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	337, 1089
EcoT22I	ATGCAT	1 cut(s)	863
EcoT38I	GRGCYC	1 cut(s)	1205
ErhI	CCWWGG	2 cut(s)	337, 1089
FaeI	CATG	5 cut(s)	436, 453, 829, 1136, 1176
FalI	AAGNNNNNCTT	4 cut(s)	55, 87, 495, 527
FatI	CATG	5 cut(s)	432, 449, 825, 1132, 1172
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	187, 225, 298, 438, 636
FokI	GGATG	2 cut(s)	42, 677
FriOI	GRGCYC	1 cut(s)	1205
Fsp4HI	GCNGC	5 cut(s)	187, 225, 298, 438, 636
FspBI	CTAG	2 cut(s)	317, 1137
GluI	GCNGC	5 cut(s)	187, 225, 298, 438, 636
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	437, 987, 1088
HapII	CCGG	4 cut(s)	110, 127, 602, 849
HgaI	GACGC	1 cut(s)	936
Hin1II	CATG	5 cut(s)	436, 453, 829, 1136, 1176
HincII	GTYRAC	4 cut(s)	519, 534, 687, 696
HindII	GTYRAC	4 cut(s)	519, 534, 687, 696
HinfI	GANTC	3 cut(s)	117, 852, 870
HpaII	CCGG	4 cut(s)	110, 127, 602, 849
Hpy166II	GTNNAC	5 cut(s)	519, 534, 687, 696, 931
Hpy188I	TCNGA	4 cut(s)	100, 116, 589, 627
Hpy188III	TCNNGA	4 cut(s)	40, 150, 367, 710
Hpy8I	GTNNAC	5 cut(s)	519, 534, 687, 696, 931
Hpy99I	CGWCG	4 cut(s)	104, 421, 493, 915
HpyAV	CCTTC	3 cut(s)	388, 973, 1230
HpyCH4IV	ACGT	6 cut(s)	138, 310, 324, 419, 521, 1058
HpyCH4V	TGCA	5 cut(s)	186, 815, 861, 1143, 1169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	912, 1094
HpyF3I	CTNAG	8 cut(s)	212, 396, 455, 789, 943, 1008, 1073, 1228
HpySE526I	ACGT	6 cut(s)	138, 310, 324, 419, 521, 1058
Hsp92II	CATG	5 cut(s)	436, 453, 829, 1136, 1176
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	42, 201, 828
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	3 cut(s)	101, 339, 395
Lsp1109I	GCAGC	3 cut(s)	198, 284, 622
LweI	GCATC	2 cut(s)	636, 870
MaeI	CTAG	2 cut(s)	317, 1137
MaeII	ACGT	6 cut(s)	138, 310, 324, 419, 521, 1058
MaeIII	GTNAC	8 cut(s)	423, 543, 549, 561, 567, 579, 967, 1118
MalI	GATC	3 cut(s)	44, 203, 830
MboI	GATC	3 cut(s)	42, 201, 828
MhlI	GDGCHC	3 cut(s)	773, 1064, 1205
MluCI	AATT	1 cut(s)	1189
MlyI	GAGTC	2 cut(s)	846, 864
MmeI	TCCRAC	4 cut(s)	83, 123, 166, 271
Mph1103I	ATGCAT	1 cut(s)	863
MroXI	GAANNNNTTC	2 cut(s)	510, 801
MseI	TTAA	2 cut(s)	744, 1158
MspA1I	CMGCKG	2 cut(s)	297, 635
MspI	CCGG	4 cut(s)	110, 127, 602, 849
MspR9I	CCNGG	2 cut(s)	168, 849
Mva1269I	GAATGC	1 cut(s)	1171
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	912, 1094
NciI	CCSGG	1 cut(s)	849
NdeII	GATC	3 cut(s)	42, 201, 828
NlaIII	CATG	5 cut(s)	436, 453, 829, 1136, 1176
NlaIV	GGNNCC	1 cut(s)	624
NmuCI	GTSAC	6 cut(s)	543, 549, 561, 567, 579, 967
NsiI	ATGCAT	1 cut(s)	863
NspI	RCATGY	1 cut(s)	1176
NspV	TTCGAA	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PctI	GAATGC	1 cut(s)	1171
PdmI	GAANNNNTTC	2 cut(s)	510, 801
PfeI	GAWTC	1 cut(s)	117
PflFI	GACNNNGTC	2 cut(s)	323, 691
PkrI	GCNGC	5 cut(s)	188, 226, 299, 439, 637
PleI	GAGTC	2 cut(s)	846, 864
PpsI	GAGTC	2 cut(s)	846, 864
Ppu21I	YACGTR	1 cut(s)	1059
Psp1406I	AACGTT	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	624
PspPI	GGNCC	4 cut(s)	104, 112, 931, 986
PsyI	GACNNNGTC	2 cut(s)	323, 691
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	6 cut(s)	12, 161, 631, 1004, 1057, 1082
RsaNI	GTAC	6 cut(s)	11, 160, 630, 1003, 1056, 1081
Rsr2I	CGGWCCG	2 cut(s)	104, 112
RsrII	CGGWCCG	2 cut(s)	104, 112
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	744, 1158
SatI	GCNGC	5 cut(s)	187, 225, 298, 438, 636
Sau3AI	GATC	3 cut(s)	42, 201, 828
Sau96I	GGNCC	4 cut(s)	104, 112, 931, 986
SchI	GAGTC	2 cut(s)	846, 864
ScrFI	CCNGG	2 cut(s)	168, 849
SduI	GDGCHC	3 cut(s)	773, 1064, 1205
SfaNI	GCATC	2 cut(s)	636, 870
SfuI	TTCGAA	1 cut(s)	133
SinI	GGWCC	3 cut(s)	104, 112, 931
Sse9I	AATT	1 cut(s)	1189
SsiI	CCGC	5 cut(s)	107, 225, 295, 438, 906
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	2 cut(s)	317, 1137
StyD4I	CCNGG	2 cut(s)	166, 847
StyI	CCWWGG	2 cut(s)	337, 1089
TaiI	ACGT	6 cut(s)	141, 313, 327, 422, 524, 1061
TaqI	TCGA	7 cut(s)	133, 255, 357, 491, 611, 773, 1186
TasI	AATT	1 cut(s)	1189
TatI	WGTACW	1 cut(s)	629
TauI	GCSGC	2 cut(s)	227, 440
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	744, 1158
Tru9I	TTAA	2 cut(s)	744, 1158
TscAI	CASTG	1 cut(s)	1236
TseFI	GTSAC	6 cut(s)	543, 549, 561, 567, 579, 967
TseI	GCWGC	3 cut(s)	186, 297, 635
Tsp45I	GTSAC	6 cut(s)	543, 549, 561, 567, 579, 967
TspDTI	ATGAA	5 cut(s)	229, 438, 516, 1178, 1227
TspGWI	ACGGA	2 cut(s)	117, 477
TspRI	CASTG	1 cut(s)	1236
Tth111I	GACNNNGTC	2 cut(s)	323, 691
VpaK11BI	GGWCC	3 cut(s)	104, 112, 931
XapI	RAATTY	1 cut(s)	1189
XceI	RCATGY	1 cut(s)	1176
XmnI	GAANNNNTTC	2 cut(s)	510, 801
XspI	CTAG	2 cut(s)	317, 1137
Zsp2I	ATGCAT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.