Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006960.1

Orthogroup ID

OG0013664

Physical Location & Seq

Genomic Coordinates Reverse (-)

13610 .. 16675

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006960.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgcctccattacacatcttcttctccttctcactcttcttcctctttcctcaaatagcgagggcagcttcggccgactgctccatatcaagctgccctaacggcccaccggtccgattccctttccggctcagacgcaagcagcgccttttttgtggctatcgagggttcgacctctcatgcaacaaccagaccctactcaccacgctcaccctccccggctccggagccttcctcgtccagcgcatcgattacaagtctcaaaagctgtggatcaacgaccccaactcctgcctccccaaaaggctcctatcccaccccttcagcttctacgacactcctttcagtgtcgttggcggttccaagaactacaccttcctcaactgctcgtcgtctcagacgacgtcaacgttaccggccaccgccacgagtatttcttgcctcagcggtggggggtacatggtctatgctgttccctcgagtgcatacgatgcttctgcaccggcagcggcaccgtcatcttcggcgtcaccggaactatgttcggtgatttcgactgctttggttccgagagaagtgacgtatgagtgggaagtaaatatggctggggaggttacccgcggcggtgttgccgtgacgtggtcgcaaccggattgtagtgattgtgaagccaggggtaaaaattgtgggttggacacagatacagggcagatcatgtgctatgaccgcaagaaaagccatgaaatcccagagcttcgattagaaatcctaaaggtagaagatgaagctcaaactcacctggcgtcattgcccaaacccgatcggtcacctacatgccccgacccaacgacggagctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

286

Amino Acids

31.21

Weight (kDa)

6.42

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04580
malus_domestica	MD06G1106800.v1.1 MD14G1128800.v1.1
prunus_persica	Prupe.5G120000_v2.0.a1
pyrus_communis	pycom06g10100
rosa_chinensis	RchiOBHm_Chr7g0194801 RchiOBHm_Chr7g0194811
rosa_laevigata	RLG00000004167
rosa_multiflora	Rmu_co8285291.1_g000001 Rmu_sc0006960.1_g000001 Rmu_sc0036266.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260970
rosa_rugosa	Rorug07G0018500.1
rosa_samantha	Rh7AG146200 Rh7BG146200 Rh7CG150100 Rh7DG147500
rosa_wichuraiana	Rw7G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	511
AccII	CGCG	1 cut(s)	621
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	8 cut(s)	357, 423, 447, 509, 619, 621, 624, 727
AclI	AACGTT	1 cut(s)	410
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	2 cut(s)	72, 417
AcuI	CTGAAG	1 cut(s)	307
AcyI	GRCGYC	3 cut(s)	404, 527, 803
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	224, 639, 850
AgeI	ACCGGT	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	639
AjnI	CCWGG	2 cut(s)	671, 798
AluBI	AGCT	7 cut(s)	68, 93, 268, 327, 754, 788, 856
AluI	AGCT	7 cut(s)	68, 93, 268, 327, 754, 788, 856
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	2 cut(s)	264, 399
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	478
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	3 cut(s)	72, 103, 417
ApeKI	GCWGC	4 cut(s)	65, 93, 142, 506
AsiGI	ACCGGT	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	147, 246
AspS9I	GGNCC	2 cut(s)	104, 112
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	6 cut(s)	193, 202, 522, 559, 788, 819
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	858
BauI	CACGAG	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	858
BbvCI	CCTCAGC	1 cut(s)	443
BbvI	GCAGC	4 cut(s)	77, 80, 154, 518
BceAI	ACGGC	2 cut(s)	118, 617
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	2 cut(s)	673, 800
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	264, 399
BfoI	RGCGCY	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	102
BisI	GCNGC	6 cut(s)	66, 94, 143, 507, 510, 622
BlsI	GCNGC	6 cut(s)	67, 95, 144, 508, 511, 623
Bme1390I	CCNGG	3 cut(s)	219, 673, 800
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	478
BmgBI	CACGTC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	104, 112
BmiI	GGNNCC	6 cut(s)	223, 229, 308, 361, 513, 567
BmrFI	CCNGG	3 cut(s)	219, 673, 800
BmsI	GCATC	2 cut(s)	255, 481
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
Bpu10I	CCTNAGC	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	249
BsaHI	GRCGYC	3 cut(s)	404, 527, 803
BsaJI	CCNNGG	3 cut(s)	217, 619, 672
BsaWI	WCCGGW	4 cut(s)	109, 224, 532, 649
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 639, 850
Bse118I	RCCGGY	3 cut(s)	109, 415, 502
Bse3DI	GCAATG	1 cut(s)	806
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	673, 800
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	217, 619, 672
BseLI	CCNNNNNNNGG	3 cut(s)	224, 639, 850
BseMI	GCAATG	1 cut(s)	806
BseMII	CTCAG	3 cut(s)	145, 410, 457
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	4 cut(s)	77, 80, 154, 518
BseYI	CCCAGC	1 cut(s)	605
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	621
Bsh1285I	CGRYCG	2 cut(s)	75, 823
BshFI	GGCC	3 cut(s)	74, 105, 419
BshNI	GGYRCC	1 cut(s)	511
BshTI	ACCGGT	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	249
BsiEI	CGRYCG	2 cut(s)	75, 823
BsiHKAI	GWGCWC	1 cut(s)	858
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	8 cut(s)	110, 127, 219, 225, 416, 503, 533, 650
BslI	CCNNNNNNNGG	3 cut(s)	224, 639, 850
BsmAI	GTCTC	2 cut(s)	264, 399
BsmBI	CGTCTC	1 cut(s)	399
BsnI	GGCC	3 cut(s)	74, 105, 419
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	273, 711, 820
BspACI	CCGC	8 cut(s)	357, 423, 447, 509, 619, 621, 624, 727
BspANI	GGCC	3 cut(s)	74, 105, 419
BspCNI	CTCAG	3 cut(s)	144, 409, 456
BspDI	ATCGAT	1 cut(s)	249
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	621
BspLI	GGNNCC	6 cut(s)	223, 229, 308, 361, 513, 567
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	806
BsrFI	RCCGGY	3 cut(s)	109, 415, 502
BssAI	RCCGGY	3 cut(s)	109, 415, 502
BssECI	CCNNGG	3 cut(s)	217, 619, 672
BssMI	GATC	3 cut(s)	273, 711, 820
BssNI	GRCGYC	3 cut(s)	404, 527, 803
BssSI	CACGAG	1 cut(s)	427
Bst2BI	CACGAG	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	673, 800
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	3 cut(s)	404, 527, 803
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	131, 396, 443
BstDSI	CCRYGG	1 cut(s)	619
BstEII	GGTNACC	2 cut(s)	613, 825
BstFNI	CGCG	1 cut(s)	621
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	2 cut(s)	147, 246
BstKTI	GATC	3 cut(s)	276, 714, 823
BstMAI	GTCTC	2 cut(s)	264, 399
BstMBI	GATC	3 cut(s)	273, 711, 820
BstMCI	CGRYCG	2 cut(s)	75, 823
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 71, 102, 144, 491, 506, 726, 735
BstNI	CCWGG	2 cut(s)	673, 800
BstNSI	RCATGY	1 cut(s)	837
BstPI	GGTNACC	2 cut(s)	613, 825
BstSCI	CCNGG	3 cut(s)	217, 671, 798
BstUI	CGCG	1 cut(s)	621
BstV1I	GCAGC	4 cut(s)	77, 80, 154, 518
BstZI	CGGCCG	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	74, 105, 419
BsuTUI	ATCGAT	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	619
BtrI	CACGTC	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	2 cut(s)	147, 246
Cfr10I	RCCGGY	3 cut(s)	109, 415, 502
Cfr13I	GGNCC	2 cut(s)	104, 112
Cfr42I	CCGCGG	1 cut(s)	622
ClaI	ATCGAT	1 cut(s)	249
CpoI	CGGWCCG	1 cut(s)	112
CseI	GACGC	3 cut(s)	144, 516, 792
Csp6I	GTAC	1 cut(s)	457
CspAI	ACCGGT	1 cut(s)	109
CspCI	CAANNNNNGTGG	2 cut(s)	251, 286
CspI	CGGWCCG	1 cut(s)	112
CviAII	CATG	5 cut(s)	180, 460, 715, 740, 834
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	3 cut(s)	131, 396, 443
DpnI	GATC	3 cut(s)	275, 713, 822
DpnII	GATC	3 cut(s)	273, 711, 820
EaeI	YGGCCR	2 cut(s)	72, 417
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	856
EclXI	CGGCCG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	478
Eco91I	GGTNACC	2 cut(s)	613, 825
EcoICRI	GAGCTC	1 cut(s)	856
EcoO65I	GGTNACC	2 cut(s)	613, 825
EcoRII	CCWGG	2 cut(s)	671, 798
EcoT38I	GRGCYC	1 cut(s)	858
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	5 cut(s)	183, 463, 718, 743, 837
FatI	CATG	5 cut(s)	179, 459, 714, 739, 833
FauI	CCCGC	1 cut(s)	626
Fnu4HI	GCNGC	6 cut(s)	66, 94, 143, 507, 510, 622
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	6 cut(s)	66, 94, 143, 507, 510, 622
GlaI	GCGC	2 cut(s)	146, 245
GluI	GCNGC	6 cut(s)	66, 94, 143, 507, 510, 622
GsaI	CCCAGC	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	74, 105, 419
HapII	CCGG	8 cut(s)	110, 127, 219, 225, 416, 503, 533, 650
HgaI	GACGC	3 cut(s)	144, 516, 792
HhaI	GCGC	2 cut(s)	147, 246
Hin1I	GRCGYC	3 cut(s)	404, 527, 803
Hin1II	CATG	5 cut(s)	183, 463, 718, 743, 837
Hin6I	GCGC	2 cut(s)	145, 244
HinP1I	GCGC	2 cut(s)	145, 244
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	8 cut(s)	110, 127, 219, 225, 416, 503, 533, 650
HphI	GGTGA	6 cut(s)	193, 202, 522, 559, 788, 819
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	5 cut(s)	116, 134, 399, 570, 860
Hpy188III	TCNNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	3 cut(s)	394, 406, 853
HpyAV	CCTTC	4 cut(s)	37, 241, 331, 385
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4IV	ACGT	4 cut(s)	404, 410, 581, 638
HpyCH4V	TGCA	3 cut(s)	183, 485, 500
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 71, 102, 144, 491, 506, 726, 735
HpyF3I	CTNAG	3 cut(s)	131, 396, 443
HpySE526I	ACGT	4 cut(s)	404, 410, 581, 638
Hsp92I	GRCGYC	3 cut(s)	404, 527, 803
Hsp92II	CATG	5 cut(s)	183, 463, 718, 743, 837
HspAI	GCGC	2 cut(s)	145, 244
Kpn2I	TCCGGA	1 cut(s)	224
KspI	CCGCGG	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	273, 711, 820
LmnI	GCTCC	5 cut(s)	86, 227, 227, 312, 853
Lsp1109I	GCAGC	4 cut(s)	77, 80, 154, 518
LweI	GCATC	2 cut(s)	255, 481
MaeII	ACGT	4 cut(s)	404, 410, 581, 638
MaeIII	GTNAC	6 cut(s)	411, 528, 577, 613, 634, 825
MalI	GATC	3 cut(s)	275, 713, 822
MboI	GATC	3 cut(s)	273, 711, 820
MboII	GAAGA	6 cut(s)	10, 13, 28, 31, 513, 791
MhlI	GDGCHC	1 cut(s)	858
MluCI	AATT	1 cut(s)	682
MmeI	TCCRAC	1 cut(s)	672
MroI	TCCGGA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	832
MspA1I	CMGCKG	3 cut(s)	447, 509, 621
MspI	CCGG	8 cut(s)	110, 127, 219, 225, 416, 503, 533, 650
MspR9I	CCNGG	3 cut(s)	219, 673, 800
MvaI	CCWGG	2 cut(s)	673, 800
MvnI	CGCG	1 cut(s)	621
MwoI	GCNNNNNNNGC	8 cut(s)	65, 71, 102, 144, 491, 506, 726, 735
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	273, 711, 820
NlaIII	CATG	5 cut(s)	183, 463, 718, 743, 837
NlaIV	GGNNCC	6 cut(s)	223, 229, 308, 361, 513, 567
NmuCI	GTSAC	4 cut(s)	528, 577, 634, 825
NspI	RCATGY	1 cut(s)	837
PaeR7I	CTCGAG	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	3 cut(s)	398, 407, 551
PfeI	GAWTC	1 cut(s)	117
PflFI	GACNNNGTC	2 cut(s)	403, 640
PinAI	ACCGGT	1 cut(s)	109
PkrI	GCNGC	6 cut(s)	67, 95, 144, 508, 511, 623
Ple19I	CGATCG	1 cut(s)	823
Psp124BI	GAGCTC	1 cut(s)	858
Psp1406I	AACGTT	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	671, 798
PspEI	GGTNACC	2 cut(s)	613, 825
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	671, 798
PspN4I	GGNNCC	6 cut(s)	223, 229, 308, 361, 513, 567
PspPI	GGNCC	2 cut(s)	104, 112
PspXI	VCTCGAGB	1 cut(s)	478
PsyI	GACNNNGTC	2 cut(s)	403, 640
PvuI	CGATCG	1 cut(s)	823
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	832
Rsr2I	CGGWCCG	1 cut(s)	112
RsrII	CGGWCCG	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	858
SacII	CCGCGG	1 cut(s)	622
SatI	GCNGC	6 cut(s)	66, 94, 143, 507, 510, 622
Sau3AI	GATC	3 cut(s)	273, 711, 820
Sau96I	GGNCC	2 cut(s)	104, 112
ScrFI	CCNGG	3 cut(s)	219, 673, 800
SduI	GDGCHC	1 cut(s)	858
SfaNI	GCATC	2 cut(s)	255, 481
Sfr274I	CTCGAG	1 cut(s)	478
Sfr303I	CCGCGG	1 cut(s)	622
SgrBI	CCGCGG	1 cut(s)	622
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	832
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	1 cut(s)	682
SsiI	CCGC	8 cut(s)	357, 423, 447, 509, 619, 621, 624, 727
SstI	GAGCTC	1 cut(s)	858
StyD4I	CCNGG	3 cut(s)	217, 671, 798
TaaI	ACNGT	1 cut(s)	516
TaiI	ACGT	4 cut(s)	407, 413, 584, 641
TaqI	TCGA	6 cut(s)	163, 171, 249, 479, 554, 757
TaqII	GACCGA	1 cut(s)	813
TasI	AATT	1 cut(s)	682
TauI	GCSGC	2 cut(s)	512, 624
TfiI	GAWTC	1 cut(s)	117
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	4 cut(s)	528, 577, 634, 825
TseI	GCWGC	4 cut(s)	65, 93, 142, 506
Tsp45I	GTSAC	4 cut(s)	528, 577, 634, 825
TspDTI	ATGAA	2 cut(s)	756, 798
TspRI	CASTG	1 cut(s)	352
Tth111I	GACNNNGTC	2 cut(s)	403, 640
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	837
XhoI	CTCGAG	1 cut(s)	478
ZraI	GACGTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.