Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036266.1

Orthogroup ID

OG0013664

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 855

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036266.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 823 bp

atgcctctctcactagctagacagtcttcacagacaggtagcttagctcttcaactccaccgtaccctctccttattccatatgcctccattacacatcttcttctccttctcactcttcttcctctttcctcaaatagcgagggcagcttcggccgactgctccgtatcaagctgccctaacggcccaccggtccgattccctttccggctcagacgcaagcagcgccctttttgtggctatcgagggttcgacctctcatgcaacaaccagaccctactcaccacgctcaccctccccggctccggagccttcctcgtccagcgcatcgattacaagtctcaaaagctgtggatcaacgaccccaactcctgcctccccaaaaggctcctatcccaccccttcagcttctacgacactcctttcagtgtcgttggcggttccaagaactacaccttcctcaactgctcgtcgtctcagacgacgtcaacgttaccggccaccgccacgagtatttcttgcctcagcggtggggggtacatggtctatgctgttccctcgagtgcatactatgcttctgcaccggcagcggcaccgtcatcttcggcgtcaccggaactatgttcggtgatttcgactgctttggttccgagagaagtgacgtatgagtgggaagtaaatatggctggggaggttacccgcggcggtgttgccgtgacgtggtcgcaaccggattgtagtgattgtgaagccaggggtaaaaattgtgggttggacacagatacagggcagatcatgtgctatgaccgcaagaaaagccatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

274

Amino Acids

29.84

Weight (kDa)

8.83

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04580
malus_domestica	MD06G1106800.v1.1 MD14G1128800.v1.1
prunus_persica	Prupe.5G120000_v2.0.a1
pyrus_communis	pycom06g10100
rosa_chinensis	RchiOBHm_Chr7g0194801 RchiOBHm_Chr7g0194811
rosa_laevigata	RLG00000004167
rosa_multiflora	Rmu_co8285291.1_g000001 Rmu_sc0006960.1_g000001 Rmu_sc0036266.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260970
rosa_rugosa	Rorug07G0018500.1
rosa_samantha	Rh7AG146200 Rh7BG146200 Rh7CG150100 Rh7DG147500
rosa_wichuraiana	Rw7G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	592
AccII	CGCG	1 cut(s)	702
AccIII	TCCGGA	1 cut(s)	305
AciI	CCGC	8 cut(s)	438, 504, 528, 590, 700, 702, 705, 808
AclI	AACGTT	1 cut(s)	491
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	2 cut(s)	153, 498
AcuI	CTGAAG	1 cut(s)	388
AcyI	GRCGYC	2 cut(s)	485, 608
AfaI	GTAC	2 cut(s)	64, 539
AfiI	CCNNNNNNNGG	3 cut(s)	236, 305, 720
AgeI	ACCGGT	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	720
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	7 cut(s)	17, 42, 47, 149, 174, 349, 408
AluI	AGCT	7 cut(s)	17, 42, 47, 149, 174, 349, 408
Alw26I	GTCTC	2 cut(s)	345, 480
AlwI	GGATC	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	559
Aor13HI	TCCGGA	1 cut(s)	305
AoxI	GGCC	3 cut(s)	153, 184, 498
ApeKI	GCWGC	4 cut(s)	146, 174, 223, 587
AsiGI	ACCGGT	1 cut(s)	190
AspLEI	GCGC	2 cut(s)	228, 327
AspS9I	GGNCC	2 cut(s)	185, 193
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	4 cut(s)	274, 283, 603, 640
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	4 cut(s)	158, 161, 235, 599
BceAI	ACGGC	2 cut(s)	199, 698
BciT130I	CCWGG	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	345, 480
BfaI	CTAG	2 cut(s)	14, 18
BfoI	RGCGCY	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	183
BisI	GCNGC	6 cut(s)	147, 175, 224, 588, 591, 703
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	6 cut(s)	148, 176, 225, 589, 592, 704
Bme1390I	CCNGG	2 cut(s)	300, 754
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	559
BmgBI	CACGTC	1 cut(s)	720
BmgT120I	GGNCC	2 cut(s)	185, 193
BmiI	GGNNCC	6 cut(s)	304, 310, 389, 442, 594, 648
BmrFI	CCNGG	2 cut(s)	300, 754
BmsI	GCATC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	330
BsaHI	GRCGYC	2 cut(s)	485, 608
BsaJI	CCNNGG	3 cut(s)	298, 700, 753
BsaWI	WCCGGW	4 cut(s)	190, 305, 613, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 305, 720
Bse118I	RCCGGY	3 cut(s)	190, 496, 583
BseAI	TCCGGA	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	754
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	298, 700, 753
BseLI	CCNNNNNNNGG	3 cut(s)	236, 305, 720
BseMII	CTCAG	3 cut(s)	226, 491, 538
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	158, 161, 235, 599
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	702
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	155, 186, 500
BshNI	GGYRCC	1 cut(s)	592
BshTI	ACCGGT	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	8 cut(s)	191, 208, 300, 306, 497, 584, 614, 731
BslI	CCNNNNNNNGG	3 cut(s)	236, 305, 720
BsmAI	GTCTC	2 cut(s)	345, 480
BsmBI	CGTCTC	1 cut(s)	480
BsnI	GGCC	3 cut(s)	155, 186, 500
BsoBI	CYCGRG	1 cut(s)	559
Bsp13I	TCCGGA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	354, 792
Bsp1720I	GCTNAGC	1 cut(s)	43
BspACI	CCGC	8 cut(s)	438, 504, 528, 590, 700, 702, 705, 808
BspANI	GGCC	3 cut(s)	155, 186, 500
BspCNI	CTCAG	3 cut(s)	225, 490, 537
BspDI	ATCGAT	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	6 cut(s)	304, 310, 389, 442, 594, 648
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	592
BsrFI	RCCGGY	3 cut(s)	190, 496, 583
BssAI	RCCGGY	3 cut(s)	190, 496, 583
BssECI	CCNNGG	3 cut(s)	298, 700, 753
BssMI	GATC	2 cut(s)	354, 792
BssNI	GRCGYC	2 cut(s)	485, 608
BssSI	CACGAG	1 cut(s)	508
Bst2BI	CACGAG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	3 cut(s)	24, 62, 597
Bst6I	CTCTTC	2 cut(s)	54, 122
BstACI	GRCGYC	2 cut(s)	485, 608
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	43, 212, 477, 524
BstDSI	CCRYGG	1 cut(s)	700
BstEII	GGTNACC	1 cut(s)	694
BstFNI	CGCG	1 cut(s)	702
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	2 cut(s)	228, 327
BstKTI	GATC	2 cut(s)	357, 795
BstMAI	GTCTC	2 cut(s)	345, 480
BstMBI	GATC	2 cut(s)	354, 792
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 152, 183, 225, 572, 587, 807, 816
BstNI	CCWGG	1 cut(s)	754
BstPI	GGTNACC	1 cut(s)	694
BstSCI	CCNGG	2 cut(s)	298, 752
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	4 cut(s)	158, 161, 235, 599
BstV2I	GAAGAC	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	155, 186, 500
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	700
BtrI	CACGTC	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	2 cut(s)	228, 327
Cfr10I	RCCGGY	3 cut(s)	190, 496, 583
Cfr13I	GGNCC	2 cut(s)	185, 193
Cfr42I	CCGCGG	1 cut(s)	703
ClaI	ATCGAT	1 cut(s)	330
CpoI	CGGWCCG	1 cut(s)	193
CseI	GACGC	2 cut(s)	225, 597
Csp6I	GTAC	2 cut(s)	63, 538
CspAI	ACCGGT	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	332, 367
CspI	CGGWCCG	1 cut(s)	193
CviAII	CATG	4 cut(s)	261, 541, 796, 821
CviQI	GTAC	2 cut(s)	63, 538
DdeI	CTNAG	4 cut(s)	43, 212, 477, 524
DpnI	GATC	2 cut(s)	356, 794
DpnII	GATC	2 cut(s)	354, 792
EaeI	YGGCCR	2 cut(s)	153, 498
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	54, 122
EarI	CTCTTC	2 cut(s)	54, 122
EclXI	CGGCCG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	193
Eco52I	CGGCCG	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	559
Eco91I	GGTNACC	1 cut(s)	694
EcoO65I	GGTNACC	1 cut(s)	694
EcoRII	CCWGG	1 cut(s)	752
Esp3I	CGTCTC	1 cut(s)	480
FaeI	CATG	3 cut(s)	264, 544, 799
FatI	CATG	3 cut(s)	260, 540, 795
FauI	CCCGC	1 cut(s)	707
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	6 cut(s)	147, 175, 224, 588, 591, 703
Fsp4HI	GCNGC	6 cut(s)	147, 175, 224, 588, 591, 703
FspBI	CTAG	2 cut(s)	14, 18
GlaI	GCGC	2 cut(s)	227, 326
GluI	GCNGC	6 cut(s)	147, 175, 224, 588, 591, 703
GsaI	CCCAGC	1 cut(s)	690
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	155, 186, 500
HapII	CCGG	8 cut(s)	191, 208, 300, 306, 497, 584, 614, 731
HgaI	GACGC	2 cut(s)	225, 597
HhaI	GCGC	2 cut(s)	228, 327
Hin1I	GRCGYC	2 cut(s)	485, 608
Hin1II	CATG	3 cut(s)	264, 544, 799
Hin6I	GCGC	2 cut(s)	226, 325
HinP1I	GCGC	2 cut(s)	226, 325
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	8 cut(s)	191, 208, 300, 306, 497, 584, 614, 731
HphI	GGTGA	4 cut(s)	274, 283, 603, 640
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	4 cut(s)	197, 215, 480, 651
Hpy188III	TCNNGA	1 cut(s)	306
Hpy8I	GTNNAC	1 cut(s)	489
Hpy99I	CGWCG	2 cut(s)	475, 487
HpyAV	CCTTC	4 cut(s)	118, 322, 412, 466
HpyCH4III	ACNGT	3 cut(s)	24, 62, 597
HpyCH4IV	ACGT	4 cut(s)	485, 491, 662, 719
HpyCH4V	TGCA	3 cut(s)	264, 566, 581
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 152, 183, 225, 572, 587, 807, 816
HpyF3I	CTNAG	4 cut(s)	43, 212, 477, 524
HpySE526I	ACGT	4 cut(s)	485, 491, 662, 719
Hsp92I	GRCGYC	2 cut(s)	485, 608
Hsp92II	CATG	3 cut(s)	264, 544, 799
HspAI	GCGC	2 cut(s)	226, 325
Kpn2I	TCCGGA	1 cut(s)	305
KspI	CCGCGG	1 cut(s)	703
Kzo9I	GATC	2 cut(s)	354, 792
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	4 cut(s)	167, 308, 308, 393
Lsp1109I	GCAGC	4 cut(s)	158, 161, 235, 599
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	2 cut(s)	14, 18
MaeII	ACGT	4 cut(s)	485, 491, 662, 719
MaeIII	GTNAC	5 cut(s)	492, 609, 658, 694, 715
MalI	GATC	2 cut(s)	356, 794
MboI	GATC	2 cut(s)	354, 792
MboII	GAAGA	7 cut(s)	18, 41, 91, 94, 109, 112, 594
MluCI	AATT	1 cut(s)	763
MmeI	TCCRAC	1 cut(s)	753
MroI	TCCGGA	1 cut(s)	305
MspA1I	CMGCKG	3 cut(s)	528, 590, 702
MspI	CCGG	8 cut(s)	191, 208, 300, 306, 497, 584, 614, 731
MspR9I	CCNGG	2 cut(s)	300, 754
MvaI	CCWGG	1 cut(s)	754
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	8 cut(s)	146, 152, 183, 225, 572, 587, 807, 816
NciI	CCSGG	1 cut(s)	300
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	2 cut(s)	354, 792
NlaIII	CATG	3 cut(s)	264, 544, 799
NlaIV	GGNNCC	6 cut(s)	304, 310, 389, 442, 594, 648
NmuCI	GTSAC	3 cut(s)	609, 658, 715
PaeR7I	CTCGAG	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	3 cut(s)	479, 488, 632
PfeI	GAWTC	1 cut(s)	198
PflFI	GACNNNGTC	2 cut(s)	484, 721
PinAI	ACCGGT	1 cut(s)	190
PkrI	GCNGC	6 cut(s)	148, 176, 225, 589, 592, 704
Psp1406I	AACGTT	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	752
PspEI	GGTNACC	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	6 cut(s)	304, 310, 389, 442, 594, 648
PspPI	GGNCC	2 cut(s)	185, 193
PspXI	VCTCGAGB	1 cut(s)	559
PsyI	GACNNNGTC	2 cut(s)	484, 721
RsaI	GTAC	2 cut(s)	64, 539
RsaNI	GTAC	2 cut(s)	63, 538
Rsr2I	CGGWCCG	1 cut(s)	193
RsrII	CGGWCCG	1 cut(s)	193
SacII	CCGCGG	1 cut(s)	703
SapI	GCTCTTC	1 cut(s)	54
SatI	GCNGC	6 cut(s)	147, 175, 224, 588, 591, 703
Sau3AI	GATC	2 cut(s)	354, 792
Sau96I	GGNCC	2 cut(s)	185, 193
ScrFI	CCNGG	2 cut(s)	300, 754
SfaNI	GCATC	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	559
Sfr303I	CCGCGG	1 cut(s)	703
SgrBI	CCGCGG	1 cut(s)	703
SinI	GGWCC	1 cut(s)	193
SlaI	CTCGAG	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	1 cut(s)	763
SsiI	CCGC	8 cut(s)	438, 504, 528, 590, 700, 702, 705, 808
SspMI	CTAG	2 cut(s)	14, 18
StyD4I	CCNGG	2 cut(s)	298, 752
TaaI	ACNGT	3 cut(s)	24, 62, 597
TaiI	ACGT	4 cut(s)	488, 494, 665, 722
TaqI	TCGA	5 cut(s)	244, 252, 330, 560, 635
TasI	AATT	1 cut(s)	763
TauI	GCSGC	2 cut(s)	593, 705
TfiI	GAWTC	1 cut(s)	198
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	3 cut(s)	609, 658, 715
TseI	GCWGC	4 cut(s)	146, 174, 223, 587
Tsp45I	GTSAC	3 cut(s)	609, 658, 715
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	433
Tth111I	GACNNNGTC	2 cut(s)	484, 721
VpaK11BI	GGWCC	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	559
XspI	CTAG	2 cut(s)	14, 18
ZraI	GACGTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.