Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285291.1

Orthogroup ID

OG0013664

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 669

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 422 bp

ggctcttattcatcattgctatcgcaaattacatctacagcaggttttttggtcgccgccaccagccaagcacagatgacctctccacctccactgctctgcaatccaccaacatcgtggtgggccttgacgccccaaccattgagtcataccccaagactttgctgggggagagtcggagattgcccagggccaacgacaacacatgctcaatttgtctgggcgagtaccaacccaaagaagcactgaggaccataccggaatgcaaccactacttccatgctaattgcatagacgaatggctcaaactgaatgccacgtgcccagtatgccggaagtcaccggaggggtcatctcatatcaccccttcttcttcagtgtcctcatcaacatcgtcttctttagcatcagtagtgcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

139

Amino Acids

15.27

Weight (kDa)

7.05

Isoelectric Point (pI)

70.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04580
malus_domestica	MD06G1106800.v1.1 MD14G1128800.v1.1
prunus_persica	Prupe.5G120000_v2.0.a1
pyrus_communis	pycom06g10100
rosa_chinensis	RchiOBHm_Chr7g0194801 RchiOBHm_Chr7g0194811
rosa_laevigata	RLG00000004167
rosa_multiflora	Rmu_co8285291.1_g000001 Rmu_sc0006960.1_g000001 Rmu_sc0036266.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260970
rosa_rugosa	Rorug07G0018500.1
rosa_samantha	Rh7AG146200 Rh7BG146200 Rh7CG150100 Rh7DG147500
rosa_wichuraiana	Rw7G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AciI	CCGC	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	359
AcvI	CACGTG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	123, 191
AspS9I	GGNCC	3 cut(s)	123, 191, 251
AsuHPI	GGTGA	2 cut(s)	332, 354
AvaII	GGWCC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	325
BbrPI	CACGTG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	3 cut(s)	123, 191, 251
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	187, 188
BsaWI	WCCGGW	2 cut(s)	258, 342
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	187, 188
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	165
BshFI	GGCC	2 cut(s)	125, 193
BsiSI	CCGG	3 cut(s)	259, 333, 343
BsmI	GAATGC	2 cut(s)	268, 318
BsnI	GGCC	2 cut(s)	125, 193
Bsp1286I	GDGCHC	1 cut(s)	325
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	125, 193
BspCNI	CTCAG	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	187, 188
BssNI	GRCGYC	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	125, 193
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	3 cut(s)	92, 244, 383
BveI	ACCTGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	123, 191, 251
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	206, 280
CviJI	RGCY	5 cut(s)	3, 66, 125, 193, 303
CviKI_1	RGCY	5 cut(s)	3, 66, 125, 193, 303
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	359
Eco72I	CACGTG	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	209, 283
FaiI	YATR	7 cut(s)	150, 207, 256, 281, 292, 330, 359
FatI	CATG	2 cut(s)	205, 279
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	125, 193
HapII	CCGG	3 cut(s)	259, 333, 343
HgaI	GACGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	209, 283
HinfI	GANTC	2 cut(s)	145, 174
HpaII	CCGG	3 cut(s)	259, 333, 343
HphI	GGTGA	2 cut(s)	332, 354
Hpy188I	TCNGA	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	4 cut(s)	102, 266, 290, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	209, 283
LweI	GCATC	1 cut(s)	415
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	338
MboII	GAAGA	3 cut(s)	362, 365, 389
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	27, 212, 285
MlyI	GAGTC	2 cut(s)	154, 183
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	91, 99, 242, 339, 393
MslI	CAYNNNNRTG	1 cut(s)	118
MspI	CCGG	3 cut(s)	259, 333, 343
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	2 cut(s)	268, 318
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	209, 283
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	209
PasI	CCCWGGG	1 cut(s)	188
PctI	GAATGC	2 cut(s)	268, 318
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	153, 182
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
PpsI	GAGTC	2 cut(s)	153, 182
Ppu21I	YACGTR	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	187
PspPI	GGNCC	3 cut(s)	123, 191, 251
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	118
SatI	GCNGC	1 cut(s)	57
Sau96I	GGNCC	3 cut(s)	123, 191, 251
SchI	GAGTC	2 cut(s)	154, 183
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	4 cut(s)	46, 83, 91, 322
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	27, 212, 285
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	187
TaiI	ACGT	1 cut(s)	322
TasI	AATT	3 cut(s)	27, 212, 285
TauI	GCSGC	1 cut(s)	59
TscAI	CASTG	3 cut(s)	99, 251, 383
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspRI	CASTG	3 cut(s)	99, 251, 383
VpaK11BI	GGWCC	1 cut(s)	251
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	3 cut(s)	114, 117, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.