Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013664

Physical Location & Seq

Genomic Coordinates Forward (+)

12839529 .. 12841559

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTGGGGAGGTTACCCGCGGCGGTGTTGCCGTGACGTGGTCGCAACCGGATTGTAGTGATTGTGAAGCCAGGGGTAAAAATTGTGGGTTCGACACAGATACAGGGCAGATCATGTGCTATGACCGCAAGAAAAGCCATGTTCTCCCAAGAGGTGCAAAATACGGCATAATCATAGGTGTGGGAATACCAGGGCTCTTATTCATCATTGCTATCGCAAATTACATCTACAGCAGGTTTTTTGGTCGCCGCCACCAGCCAAGCACAGATGACCTCTCCACCTCCACTGCTCTGCAATCCACCAACATCGTGGTGGGCCTTGACGCCCCAACCATTGAGTCATACCCCAAGACTTTGCTGGGGGAGAGTCGGAGATTGCCCAGGGCCAACGACAACACATGCTCAATTTGTCTGGGCGAGTACCAACCCAAAGAAGCACTGAGGACCATACCGGAATGCAACCACTACTTCCATGCTAATTGCATAGACGAATGGCTCAAACTGAATGCCACGTGCCCAGTATGCCGGAAGTCACCGGAGGGGTCATCTCATATCACCCCTTCTTCTTCAGTGTCCTCATCAACATCGTCTTCTTTAGCCTCAGTAGTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

204

Amino Acids

22.12

Weight (kDa)

7.53

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	132 - 176	6.8e-14	Ring finger domain
zf-RING_11	PF17123	134 - 162	1.4e-10	RING-like zinc finger
zf-rbx1	PF12678	134 - 176	9.1e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	134 - 175	1.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	134 - 175	7.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	134 - 177	2.2e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04580
malus_domestica	MD06G1106800.v1.1 MD14G1128800.v1.1
prunus_persica	Prupe.5G120000_v2.0.a1
pyrus_communis	pycom06g10100
rosa_chinensis	RchiOBHm_Chr7g0194801 RchiOBHm_Chr7g0194811
rosa_laevigata	RLG00000004167
rosa_multiflora	Rmu_co8285291.1_g000001 Rmu_sc0006960.1_g000001 Rmu_sc0036266.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260970
rosa_rugosa	Rorug07G0018500.1
rosa_samantha	Rh7AG146200 Rh7BG146200 Rh7CG150100 Rh7DG147500
rosa_wichuraiana	Rw7G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	225
AccII	CGCG	1 cut(s)	21
AciI	CCGC	5 cut(s)	19, 21, 24, 127, 250
AcuI	CTGAAG	1 cut(s)	552
AcvI	CACGTG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	39
AjiI	CACGTC	1 cut(s)	39
AjnI	CCWGG	3 cut(s)	71, 190, 380
AoxI	GGCC	2 cut(s)	316, 384
AspS9I	GGNCC	3 cut(s)	316, 384, 444
AsuHPI	GGTGA	2 cut(s)	525, 547
AvaII	GGWCC	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	198
BbrPI	CACGTG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	582
BceAI	ACGGC	2 cut(s)	17, 181
BciT130I	CCWGG	3 cut(s)	73, 192, 382
BfmI	CTRYAG	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	225
BisI	GCNGC	2 cut(s)	22, 250
BlsI	GCNGC	2 cut(s)	23, 251
Bme1390I	CCNGG	3 cut(s)	73, 192, 382
Bme18I	GGWCC	1 cut(s)	444
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	3 cut(s)	316, 384, 444
BmrFI	CCNGG	3 cut(s)	73, 192, 382
BmrI	ACTGGG	1 cut(s)	512
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	5 cut(s)	19, 72, 191, 380, 381
BsaWI	WCCGGW	3 cut(s)	49, 451, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	73, 192, 382
BseDI	CCNNGG	5 cut(s)	19, 72, 191, 380, 381
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	431, 615
BseNI	ACTGG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	518
BseYI	CCCAGC	2 cut(s)	5, 358
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	318, 386
BsiSI	CCGG	4 cut(s)	50, 452, 526, 536
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmI	GAATGC	2 cut(s)	461, 511
BsnI	GGCC	2 cut(s)	318, 386
Bsp1286I	GDGCHC	2 cut(s)	198, 518
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	5 cut(s)	19, 21, 24, 127, 250
BspANI	GGCC	2 cut(s)	318, 386
BspCNI	CTCAG	2 cut(s)	432, 614
BspFNI	CGCG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	5 cut(s)	19, 72, 191, 380, 381
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	324
Bst2UI	CCWGG	3 cut(s)	73, 192, 382
BstACI	GRCGYC	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	440, 601
BstDSI	CCRYGG	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 135, 522
BstNI	CCWGG	3 cut(s)	73, 192, 382
BstNSI	RCATGY	1 cut(s)	402
BstPI	GGTNACC	1 cut(s)	13
BstSCI	CCNGG	3 cut(s)	71, 190, 380
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	518
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	318, 386
BtgI	CCRYGG	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	285, 437, 576
BveI	ACCTGC	1 cut(s)	225
Cfr13I	GGNCC	3 cut(s)	316, 384, 444
Cfr42I	CCGCGG	1 cut(s)	22
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	4 cut(s)	115, 140, 399, 473
CviJI	RGCY	9 cut(s)	5, 71, 138, 196, 259, 318, 386, 496, 599
CviKI_1	RGCY	9 cut(s)	5, 71, 138, 196, 259, 318, 386, 496, 599
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	440, 601
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	552
Eco72I	CACGTG	1 cut(s)	513
Eco91I	GGTNACC	1 cut(s)	13
EcoO65I	GGTNACC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	71, 190, 380
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	4 cut(s)	118, 143, 402, 476
FatI	CATG	4 cut(s)	114, 139, 398, 472
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	22, 250
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	22, 250
GluI	GCNGC	2 cut(s)	22, 250
GsaI	CCCAGC	2 cut(s)	9, 362
HaeIII	GGCC	2 cut(s)	318, 386
HapII	CCGG	4 cut(s)	50, 452, 526, 536
HgaI	GACGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	4 cut(s)	118, 143, 402, 476
HinfI	GANTC	2 cut(s)	338, 367
HpaII	CCGG	4 cut(s)	50, 452, 526, 536
HphI	GGTGA	2 cut(s)	525, 547
Hpy188I	TCNGA	1 cut(s)	372
HpyAV	CCTTC	1 cut(s)	570
HpyCH4IV	ACGT	2 cut(s)	38, 512
HpyCH4V	TGCA	5 cut(s)	158, 295, 459, 483, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 135, 522
HpyF3I	CTNAG	2 cut(s)	440, 601
HpySE526I	ACGT	2 cut(s)	38, 512
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	118, 143, 402, 476
KspI	CCGCGG	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	111
MaeII	ACGT	2 cut(s)	38, 512
MaeIII	GTNAC	3 cut(s)	13, 34, 531
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	3 cut(s)	555, 558, 582
MhlI	GDGCHC	2 cut(s)	198, 518
MluCI	AATT	4 cut(s)	82, 220, 405, 478
MlyI	GAGTC	2 cut(s)	347, 376
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	8 cut(s)	4, 146, 284, 292, 435, 532, 586, 610
MslI	CAYNNNNRTG	2 cut(s)	179, 311
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	4 cut(s)	50, 452, 526, 536
MspR9I	CCNGG	3 cut(s)	73, 192, 382
Mva1269I	GAATGC	2 cut(s)	461, 511
MvaI	CCWGG	3 cut(s)	73, 192, 382
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	126, 135, 522
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	4 cut(s)	118, 143, 402, 476
NmuCI	GTSAC	2 cut(s)	34, 531
NspI	RCATGY	1 cut(s)	402
PasI	CCCWGGG	1 cut(s)	381
PctI	GAATGC	2 cut(s)	461, 511
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	23, 251
PleI	GAGTC	2 cut(s)	346, 375
PmaCI	CACGTG	1 cut(s)	513
PmlI	CACGTG	1 cut(s)	513
PpsI	GAGTC	2 cut(s)	346, 375
Ppu21I	YACGTR	1 cut(s)	513
Psp6I	CCWGG	3 cut(s)	71, 190, 380
PspCI	CACGTG	1 cut(s)	513
PspEI	GGTNACC	1 cut(s)	13
PspFI	CCCAGC	2 cut(s)	5, 358
PspGI	CCWGG	3 cut(s)	71, 190, 380
PspPI	GGNCC	3 cut(s)	316, 384, 444
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	2 cut(s)	179, 311
SacII	CCGCGG	1 cut(s)	22
SatI	GCNGC	2 cut(s)	22, 250
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	3 cut(s)	316, 384, 444
SchI	GAGTC	2 cut(s)	347, 376
ScrFI	CCNGG	3 cut(s)	73, 192, 382
SduI	GDGCHC	2 cut(s)	198, 518
SetI	ASST	8 cut(s)	15, 41, 157, 181, 239, 276, 284, 515
SfcI	CTRYAG	1 cut(s)	229
Sfr303I	CCGCGG	1 cut(s)	22
SgrBI	CCGCGG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	179, 311
Sse9I	AATT	4 cut(s)	82, 220, 405, 478
SsiI	CCGC	5 cut(s)	19, 21, 24, 127, 250
StyD4I	CCNGG	3 cut(s)	71, 190, 380
TaiI	ACGT	2 cut(s)	41, 515
TaqI	TCGA	1 cut(s)	93
TasI	AATT	4 cut(s)	82, 220, 405, 478
TauI	GCSGC	2 cut(s)	24, 252
TscAI	CASTG	3 cut(s)	292, 444, 576
TseFI	GTSAC	2 cut(s)	34, 531
Tsp45I	GTSAC	2 cut(s)	34, 531
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	3 cut(s)	292, 444, 576
Tth111I	GACNNNGTC	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	444
XceI	RCATGY	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	3 cut(s)	307, 310, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.