The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G45530 |
| fragaria_vesca | FvH4_5g10340 |
| malus_domestica | MD06G1124900.v1.1 |
| prunus_persica | Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 |
| pyrus_communis | pycom06g11550 pycom14g11700 |
| rosa_chinensis | RchiOBHm_Chr7g0187881 |
| rosa_multiflora | Rmu_sc0022114.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00266980 |
| rosa_rugosa | Rorug06G0485000 |
| rosa_samantha | Rh7AG090200 Rh7BG091800 Rh7CG090900 |
| rosa_wichuraiana | Rw7G007790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 6 cut(s) | 66, 69, 122, 173, 186, 329 |
| AcuI | CTGAAG | 1 cut(s) | 180 |
| AcyI | GRCGYC | 1 cut(s) | 152 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 1 cut(s) | 42 |
| AluBI | AGCT | 3 cut(s) | 58, 84, 252 |
| AluI | AGCT | 3 cut(s) | 58, 84, 252 |
| Alw26I | GTCTC | 1 cut(s) | 71 |
| ApeKI | GCWGC | 3 cut(s) | 52, 55, 118 |
| AspS9I | GGNCC | 2 cut(s) | 71, 229 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 175 |
| AvaII | GGWCC | 2 cut(s) | 71, 229 |
| BbvI | GCAGC | 3 cut(s) | 64, 67, 105 |
| BciT130I | CCWGG | 1 cut(s) | 44 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 71 |
| BfaI | CTAG | 2 cut(s) | 59, 81 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BisI | GCNGC | 5 cut(s) | 53, 56, 67, 119, 122 |
| BlsI | GCNGC | 5 cut(s) | 54, 57, 68, 120, 123 |
| Bme1390I | CCNGG | 1 cut(s) | 44 |
| Bme18I | GGWCC | 2 cut(s) | 71, 229 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 235 |
| BmgT120I | GGNCC | 2 cut(s) | 71, 229 |
| BmiI | GGNNCC | 1 cut(s) | 213 |
| BmrFI | CCNGG | 1 cut(s) | 44 |
| BmrI | ACTGGG | 1 cut(s) | 87 |
| BmsI | GCATC | 1 cut(s) | 304 |
| BmuI | ACTGGG | 1 cut(s) | 87 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 68, 100 |
| BpmI | CTGGAG | 1 cut(s) | 65 |
| Bsa29I | ATCGAT | 1 cut(s) | 307 |
| BsaHI | GRCGYC | 1 cut(s) | 152 |
| BsaJI | CCNNGG | 1 cut(s) | 189 |
| Bse1I | ACTGG | 1 cut(s) | 93 |
| BseBI | CCWGG | 1 cut(s) | 44 |
| BseCI | ATCGAT | 1 cut(s) | 307 |
| BseDI | CCNNGG | 1 cut(s) | 189 |
| BseGI | GGATG | 1 cut(s) | 319 |
| BseMII | CTCAG | 1 cut(s) | 66 |
| BseNI | ACTGG | 1 cut(s) | 93 |
| BseRI | GAGGAG | 1 cut(s) | 221 |
| BseXI | GCAGC | 3 cut(s) | 64, 67, 105 |
| Bsh1285I | CGRYCG | 1 cut(s) | 311 |
| BshVI | ATCGAT | 1 cut(s) | 307 |
| BsiEI | CGRYCG | 1 cut(s) | 311 |
| BsmAI | GTCTC | 1 cut(s) | 71 |
| Bsp143I | GATC | 3 cut(s) | 304, 308, 349 |
| BspACI | CCGC | 6 cut(s) | 66, 69, 122, 173, 186, 329 |
| BspCNI | CTCAG | 1 cut(s) | 67 |
| BspDI | ATCGAT | 1 cut(s) | 307 |
| BspHI | TCATGA | 2 cut(s) | 166, 256 |
| BspLI | GGNNCC | 1 cut(s) | 213 |
| BsrI | ACTGG | 1 cut(s) | 93 |
| BssECI | CCNNGG | 1 cut(s) | 189 |
| BssMI | GATC | 3 cut(s) | 304, 308, 349 |
| BssNI | GRCGYC | 1 cut(s) | 152 |
| Bst2UI | CCWGG | 1 cut(s) | 44 |
| Bst4CI | ACNGT | 4 cut(s) | 106, 115, 181, 193 |
| BstACI | GRCGYC | 1 cut(s) | 152 |
| BstC8I | GCNNGC | 2 cut(s) | 331, 335 |
| BstDEI | CTNAG | 1 cut(s) | 75 |
| BstDSI | CCRYGG | 1 cut(s) | 189 |
| BstF5I | GGATG | 1 cut(s) | 319 |
| BstKTI | GATC | 3 cut(s) | 307, 311, 352 |
| BstMAI | GTCTC | 1 cut(s) | 71 |
| BstMBI | GATC | 3 cut(s) | 304, 308, 349 |
| BstMCI | CGRYCG | 1 cut(s) | 311 |
| BstNI | CCWGG | 1 cut(s) | 44 |
| BstSCI | CCNGG | 1 cut(s) | 42 |
| BstV1I | GCAGC | 3 cut(s) | 64, 67, 105 |
| Bsu15I | ATCGAT | 1 cut(s) | 307 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuTUI | ATCGAT | 1 cut(s) | 307 |
| BtgI | CCRYGG | 1 cut(s) | 189 |
| BtsCI | GGATG | 1 cut(s) | 319 |
| Cac8I | GCNNGC | 2 cut(s) | 331, 335 |
| CciI | TCATGA | 2 cut(s) | 166, 256 |
| Cfr13I | GGNCC | 2 cut(s) | 71, 229 |
| ClaI | ATCGAT | 1 cut(s) | 307 |
| CseI | GACGC | 1 cut(s) | 141 |
| CviAII | CATG | 3 cut(s) | 167, 257, 353 |
| CviJI | RGCY | 4 cut(s) | 58, 84, 252, 333 |
| CviKI_1 | RGCY | 4 cut(s) | 58, 84, 252, 333 |
| DdeI | CTNAG | 1 cut(s) | 75 |
| DpnI | GATC | 3 cut(s) | 306, 310, 351 |
| DpnII | GATC | 3 cut(s) | 304, 308, 349 |
| DriI | GACNNNNNGTC | 1 cut(s) | 235 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 235 |
| Eco47I | GGWCC | 2 cut(s) | 71, 229 |
| Eco57I | CTGAAG | 1 cut(s) | 180 |
| EcoRII | CCWGG | 1 cut(s) | 42 |
| FaeI | CATG | 3 cut(s) | 170, 260, 356 |
| FaiI | YATR | 4 cut(s) | 168, 258, 354, 358 |
| FatI | CATG | 3 cut(s) | 166, 256, 352 |
| FauI | CCCGC | 1 cut(s) | 322 |
| Fnu4HI | GCNGC | 5 cut(s) | 53, 56, 67, 119, 122 |
| FokI | GGATG | 1 cut(s) | 326 |
| Fsp4HI | GCNGC | 5 cut(s) | 53, 56, 67, 119, 122 |
| FspBI | CTAG | 2 cut(s) | 59, 81 |
| GluI | GCNGC | 5 cut(s) | 53, 56, 67, 119, 122 |
| GsuI | CTGGAG | 1 cut(s) | 65 |
| HgaI | GACGC | 1 cut(s) | 141 |
| Hin1I | GRCGYC | 1 cut(s) | 152 |
| Hin1II | CATG | 3 cut(s) | 170, 260, 356 |
| HphI | GGTGA | 2 cut(s) | 20, 175 |
| Hpy188I | TCNGA | 3 cut(s) | 160, 205, 313 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 167, 257 |
| HpyAV | CCTTC | 1 cut(s) | 225 |
| HpyCH4III | ACNGT | 4 cut(s) | 106, 115, 181, 193 |
| HpyCH4V | TGCA | 1 cut(s) | 267 |
| HpyF3I | CTNAG | 1 cut(s) | 75 |
| Hsp92I | GRCGYC | 1 cut(s) | 152 |
| Hsp92II | CATG | 3 cut(s) | 170, 260, 356 |
| Kzo9I | GATC | 3 cut(s) | 304, 308, 349 |
| LpnPI | CCDG | 9 cut(s) | 29, 51, 56, 87, 106, 116, 248, 262, 266 |
| Lsp1109I | GCAGC | 3 cut(s) | 64, 67, 105 |
| LweI | GCATC | 1 cut(s) | 304 |
| MaeI | CTAG | 2 cut(s) | 59, 81 |
| MaeIII | GTNAC | 2 cut(s) | 33, 181 |
| MalI | GATC | 3 cut(s) | 306, 310, 351 |
| MboI | GATC | 3 cut(s) | 304, 308, 349 |
| MluCI | AATT | 1 cut(s) | 196 |
| MnlI | CCTC | 4 cut(s) | 199, 202, 234, 319 |
| MspR9I | CCNGG | 1 cut(s) | 44 |
| MvaI | CCWGG | 1 cut(s) | 44 |
| NdeII | GATC | 3 cut(s) | 304, 308, 349 |
| NlaIII | CATG | 3 cut(s) | 170, 260, 356 |
| NlaIV | GGNNCC | 1 cut(s) | 213 |
| NmuCI | GTSAC | 1 cut(s) | 181 |
| PagI | TCATGA | 2 cut(s) | 166, 256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 149 |
| PkrI | GCNGC | 5 cut(s) | 54, 57, 68, 120, 123 |
| Ple19I | CGATCG | 1 cut(s) | 311 |
| Psp6I | CCWGG | 1 cut(s) | 42 |
| PspGI | CCWGG | 1 cut(s) | 42 |
| PspN4I | GGNNCC | 1 cut(s) | 213 |
| PspPI | GGNCC | 2 cut(s) | 71, 229 |
| PvuI | CGATCG | 1 cut(s) | 311 |
| SatI | GCNGC | 5 cut(s) | 53, 56, 67, 119, 122 |
| Sau3AI | GATC | 3 cut(s) | 304, 308, 349 |
| Sau96I | GGNCC | 2 cut(s) | 71, 229 |
| ScrFI | CCNGG | 1 cut(s) | 44 |
| SetI | ASST | 9 cut(s) | 40, 45, 60, 64, 86, 135, 213, 237, 254 |
| SfaNI | GCATC | 1 cut(s) | 304 |
| SinI | GGWCC | 2 cut(s) | 71, 229 |
| Sse9I | AATT | 1 cut(s) | 196 |
| SsiI | CCGC | 6 cut(s) | 66, 69, 122, 173, 186, 329 |
| SspMI | CTAG | 2 cut(s) | 59, 81 |
| StyD4I | CCNGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 4 cut(s) | 106, 115, 181, 193 |
| TaqI | TCGA | 3 cut(s) | 239, 307, 324 |
| TasI | AATT | 1 cut(s) | 196 |
| TauI | GCSGC | 2 cut(s) | 69, 124 |
| TseFI | GTSAC | 1 cut(s) | 181 |
| TseI | GCWGC | 3 cut(s) | 52, 55, 118 |
| Tsp45I | GTSAC | 1 cut(s) | 181 |
| TspDTI | ATGAA | 4 cut(s) | 155, 183, 273, 306 |
| VpaK11BI | GGWCC | 2 cut(s) | 71, 229 |
| XspI | CTAG | 2 cut(s) | 59, 81 |