Rh7AG090200

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004996
Physical Location & Seq
Reverse (-)
6871907 .. 6874184
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG090200.1

Sequence Viewer

Length: 621 bp
ATGAGCAATGACACGGAGAGCTCAAATTGCGAGCCTCCTGACCTTGAGAAGCAGCAGCACCGTGACGGCGGCGCTGAGGCGGTCACCTCAATTCCCGATTCTTCTGCCGTTGAGGATACGGTGCCGCCGCTGCTGAACGTCGTCGTTTCCGAACCACCACCGGCCCCGCCCGCCGCCACCGCCAATTCGTCCAAGGATGTTAAGGGACAGCATTCCAGAAACTCCAGCGCTCATGAACAATGCAGGGTGTGTCAGCAGGATAAAGATGAAGCTTTGATTGATCTCGGATGCCATTGTCGAGGTGAACTTGCGAAAGCGCACAGATCATGTATAGACACTTGGTTTCAATCCAAAGGATCAAACAAATGCGAGATTTGCCAAGAGGTAGCTGCGAATGTGTCATCTCCAGAATCCCAGCCAACTACAAATTATTGGGTTTGGAGAATTGAAACAACCTATCGATCGCAAAACCCAAACCAGGGCTGTATGAGCCCACTTTGGGTGGCATTCTCAATCCTCATTGGTGGTCTGCTGTTGGACGTGCTAATATCTGCCACCCTAGGCATCTCTGCAGTTCCCATTAACATTATCATCGGTATGCTTTTGCATGTTAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

206

Amino Acids

22.26

Weight (kDa)

4.94

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 81 - 126 4.8e-12 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 8 cut(s) 69, 80, 125, 128, 167, 171, 174, 180
AclWI GGATC 1 cut(s) 364
AfeI AGCGCT 1 cut(s) 229
AfiI CCNNNNNNNGG 3 cut(s) 478, 479, 499
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 2 cut(s) 347, 449
AjiI CACGTC 1 cut(s) 541
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 3 cut(s) 21, 272, 389
AluI AGCT 3 cut(s) 21, 272, 389
Alw21I GWGCWC 1 cut(s) 23
AlwI GGATC 1 cut(s) 364
Aor51HI AGCGCT 1 cut(s) 229
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 4 cut(s) 52, 55, 130, 389
AspA2I CCTAGG 1 cut(s) 559
AspLEI GCGC 3 cut(s) 74, 230, 319
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 76, 314
AvrII CCTAGG 1 cut(s) 559
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 2 cut(s) 23, 494
Bbv12I GWGCWC 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 4 cut(s) 64, 67, 117, 376
BceAI ACGGC 2 cut(s) 82, 92
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 479
BciVI GTATCC 1 cut(s) 109
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 570
BfoI RGCGCY 2 cut(s) 75, 231
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 390
BlnI CCTAGG 1 cut(s) 559
BlsI GCNGC 8 cut(s) 54, 57, 71, 126, 129, 132, 175, 391
Bme1390I CCNGG 1 cut(s) 479
BmgBI CACGTC 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 123, 165
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 2 cut(s) 278, 573
BpmI CTGGAG 2 cut(s) 208, 390
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 460
BsaJI CCNNGG 3 cut(s) 192, 478, 559
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 479, 499
Bse118I RCCGGY 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 479
BseCI ATCGAT 1 cut(s) 460
BseDI CCNNGG 3 cut(s) 192, 478, 559
BseGI GGATG 2 cut(s) 202, 293
BseLI CCNNNNNNNGG 3 cut(s) 478, 479, 499
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 4 cut(s) 64, 67, 117, 376
BseYI CCCAGC 1 cut(s) 414
Bsh1285I CGRYCG 1 cut(s) 464
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 121
BshVI ATCGAT 1 cut(s) 460
BsiEI CGRYCG 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 3 cut(s) 478, 479, 499
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 2 cut(s) 211, 506
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 23, 494
Bsp143I GATC 4 cut(s) 280, 323, 356, 461
BspACI CCGC 8 cut(s) 69, 80, 125, 128, 167, 171, 174, 180
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 67
BspDI ATCGAT 1 cut(s) 460
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 123, 165
BspMAI CTGCAG 1 cut(s) 574
BspPI GGATC 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 192, 478, 559
BssMI GATC 4 cut(s) 280, 323, 356, 461
BssT1I CCWWGG 2 cut(s) 192, 559
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 62, 121
BstC8I GCNNGC 2 cut(s) 32, 171
BstDEI CTNAG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 202, 293
BstH2I RGCGCY 2 cut(s) 75, 231
BstHHI GCGC 3 cut(s) 74, 230, 319
BstKTI GATC 4 cut(s) 283, 326, 359, 464
BstMBI GATC 4 cut(s) 280, 323, 356, 461
BstMCI CGRYCG 1 cut(s) 464
BstMWI GCNNNNNNNGC 6 cut(s) 27, 130, 170, 179, 375, 489
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 2 cut(s) 611, 619
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 4 cut(s) 64, 67, 117, 376
Bsu15I ATCGAT 1 cut(s) 460
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 164
BsuTUI ATCGAT 1 cut(s) 460
BtrI CACGTC 1 cut(s) 541
BtsCI GGATG 2 cut(s) 202, 293
Cac8I GCNNGC 2 cut(s) 32, 171
CciI TCATGA 1 cut(s) 232
CfoI GCGC 3 cut(s) 74, 230, 319
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 460
CviAII CATG 4 cut(s) 233, 327, 608, 616
CviJI RGCY 8 cut(s) 21, 34, 164, 272, 389, 418, 483, 492
CviKI_1 RGCY 8 cut(s) 21, 34, 164, 272, 389, 418, 483, 492
DdeI CTNAG 1 cut(s) 75
DpnI GATC 4 cut(s) 282, 325, 358, 463
DpnII GATC 4 cut(s) 280, 323, 356, 461
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 192, 559
Eco24I GRGCYC 2 cut(s) 23, 494
Eco47III AGCGCT 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 21
Eco91I GGTNACC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 21
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 477
EcoT14I CCWWGG 2 cut(s) 192, 559
EcoT38I GRGCYC 2 cut(s) 23, 494
ErhI CCWWGG 2 cut(s) 192, 559
FaeI CATG 4 cut(s) 236, 330, 611, 619
FaiI YATR 7 cut(s) 234, 328, 332, 488, 599, 609, 617
FaqI GGGAC 1 cut(s) 219
FatI CATG 4 cut(s) 232, 326, 607, 615
FauI CCCGC 2 cut(s) 174, 178
Fnu4HI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 390
FokI GGATG 2 cut(s) 209, 300
FriOI GRGCYC 2 cut(s) 23, 494
Fsp4HI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 390
FspBI CTAG 1 cut(s) 560
GlaI GCGC 3 cut(s) 73, 229, 318
GluI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 390
GsaI CCCAGC 1 cut(s) 418
GsuI CTGGAG 2 cut(s) 208, 390
HaeII RGCGCY 2 cut(s) 75, 231
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 161
HhaI GCGC 3 cut(s) 74, 230, 319
Hin1II CATG 4 cut(s) 236, 330, 611, 619
Hin6I GCGC 3 cut(s) 72, 228, 317
HinP1I GCGC 3 cut(s) 72, 228, 317
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 2 cut(s) 98, 410
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 76, 314
Hpy166II GTNNAC 2 cut(s) 305, 613
Hpy188I TCNGA 2 cut(s) 151, 287
Hpy188III TCNNGA 5 cut(s) 38, 95, 216, 233, 407
Hpy8I GTNNAC 2 cut(s) 305, 613
Hpy99I CGWCG 2 cut(s) 143, 146
HpyCH4III ACNGT 2 cut(s) 62, 121
HpyCH4IV ACGT 2 cut(s) 138, 540
HpyCH4V TGCA 3 cut(s) 243, 572, 607
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 130, 170, 179, 375, 489
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 138, 540
Hsp92II CATG 4 cut(s) 236, 330, 611, 619
HspAI GCGC 3 cut(s) 72, 228, 317
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 4 cut(s) 280, 323, 356, 461
Lsp1109I GCAGC 4 cut(s) 64, 67, 117, 376
LweI GCATC 2 cut(s) 278, 573
MaeI CTAG 1 cut(s) 560
MaeII ACGT 2 cut(s) 138, 540
MaeIII GTNAC 2 cut(s) 62, 82
MalI GATC 4 cut(s) 282, 325, 358, 463
MboI GATC 4 cut(s) 280, 323, 356, 461
MboII GAAGA 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 23, 494
MluCI AATT 5 cut(s) 25, 90, 184, 427, 444
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 7 cut(s) 45, 70, 97, 106, 293, 376, 527
MseI TTAA 3 cut(s) 201, 582, 612
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 479
Mva1269I GAATGC 2 cut(s) 211, 506
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 6 cut(s) 27, 130, 170, 179, 375, 489
NdeII GATC 4 cut(s) 280, 323, 356, 461
NlaIII CATG 4 cut(s) 236, 330, 611, 619
NlaIV GGNNCC 2 cut(s) 123, 165
NmuCI GTSAC 2 cut(s) 62, 82
NspI RCATGY 2 cut(s) 611, 619
PagI TCATGA 1 cut(s) 232
PciI ACATGT 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 2 cut(s) 211, 506
PfeI GAWTC 2 cut(s) 98, 410
PkrI GCNGC 8 cut(s) 54, 57, 71, 126, 129, 132, 175, 391
Ple19I CGATCG 1 cut(s) 464
PscI ACATGT 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 477
PspEI GGTNACC 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 2 cut(s) 123, 165
PspPI GGNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 574
PvuI CGATCG 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 596
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 201, 582, 612
SatI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 390
Sau3AI GATC 4 cut(s) 280, 323, 356, 461
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 2 cut(s) 23, 494
SfaNI GCATC 2 cut(s) 278, 573
SfcI CTRYAG 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 5 cut(s) 25, 90, 184, 427, 444
SsiI CCGC 8 cut(s) 69, 80, 125, 128, 167, 171, 174, 180
SspMI CTAG 1 cut(s) 560
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 2 cut(s) 192, 559
TaaI ACNGT 2 cut(s) 62, 121
TaiI ACGT 2 cut(s) 141, 543
TaqI TCGA 2 cut(s) 298, 460
TasI AATT 5 cut(s) 25, 90, 184, 427, 444
TauI GCSGC 4 cut(s) 72, 127, 130, 176
TfiI GAWTC 2 cut(s) 98, 410
Tru1I TTAA 3 cut(s) 201, 582, 612
Tru9I TTAA 3 cut(s) 201, 582, 612
TseFI GTSAC 2 cut(s) 62, 82
TseI GCWGC 4 cut(s) 52, 55, 130, 389
Tsp45I GTSAC 2 cut(s) 62, 82
TspDTI ATGAA 2 cut(s) 249, 282
TspGWI ACGGA 1 cut(s) 29
XceI RCATGY 2 cut(s) 611, 619
XmaJI CCTAGG 1 cut(s) 559
XspI CTAG 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.