Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022114.1

Orthogroup ID

OG0004996

Physical Location & Seq

Genomic Coordinates Reverse (-)

3069 .. 5113

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022114.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgagcaatgacacggagagctcaaattgcgagcctcctgaccttgagaagcagcagcaccgtgacggcggcgctgaggcggttacctcaattcccgattcttctgccgttgaggatacggtgccgccgctgctgaacgtcgtcgtttccgaaccaccaccggccccgcccgccgccaccgccaattcgtccaaggatgttaagggacagcattccagaaactccagcgctcatgaacaatgcagggtgtgtcagcaggataaagatgaagctttgattgatctcggatgccattgtcgaggtgaacttgcgaaagcgcacagatcatgtatagacacttggtttcaatccaaaggatcaaacaaatgcgagatttgccaagaggtagctgcgaatgtgtcatctccagaatcccagccaactacaaattattgggtttggagaattgaaacaacctatcgatcgcaaaacccaaaccagggctgtatgagcccactttgggtggcattctcaatcctcattggtggtctgctgttggacgtgctaatatctgccaccctaggcatctctgcagttcccattaacattatcatcggtgttattgtggtccttgggcttggaactgtactgagacttgccttggcgttttgccatgagtggggttcgaggagagttgtgcagcgggtagacacacagagagtgcctcttggctaccatcctggtctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

242

Amino Acids

26.19

Weight (kDa)

5.47

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45530
fragaria_vesca	FvH4_5g10340
malus_domestica	MD06G1124900.v1.1
prunus_persica	Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1 Prupe.5G135500_v2.0.a1
pyrus_communis	pycom06g11550 pycom14g11700
rosa_chinensis	RchiOBHm_Chr7g0187881
rosa_multiflora	Rmu_sc0022114.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266980
rosa_rugosa	Rorug06G0485000
rosa_samantha	Rh7AG090200 Rh7BG091800 Rh7CG090900
rosa_wichuraiana	Rw7G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	687
AciI	CCGC	9 cut(s)	69, 80, 125, 128, 167, 171, 174, 180, 682
AclWI	GGATC	1 cut(s)	364
AfaI	GTAC	1 cut(s)	627
AfeI	AGCGCT	1 cut(s)	229
AfiI	CCNNNNNNNGG	4 cut(s)	478, 479, 499, 658
AgsI	TTSAA	2 cut(s)	347, 449
AjiI	CACGTC	1 cut(s)	541
AjnI	CCWGG	2 cut(s)	477, 718
AluBI	AGCT	3 cut(s)	21, 272, 389
AluI	AGCT	3 cut(s)	21, 272, 389
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	364
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	5 cut(s)	52, 55, 130, 389, 679
AspA2I	CCTAGG	1 cut(s)	559
AspLEI	GCGC	3 cut(s)	74, 230, 319
AspS9I	GGNCC	2 cut(s)	163, 607
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	607
AvrII	CCTAGG	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	2 cut(s)	23, 494
Bbv12I	GWGCWC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	5 cut(s)	64, 67, 117, 376, 691
BccI	CCATC	1 cut(s)	723
BceAI	ACGGC	2 cut(s)	82, 92
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	479, 720
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	2 cut(s)	75, 231
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	9 cut(s)	53, 56, 70, 125, 128, 131, 174, 390, 680
BlnI	CCTAGG	1 cut(s)	559
BlsI	GCNGC	9 cut(s)	54, 57, 71, 126, 129, 132, 175, 391, 681
Bme1390I	CCNGG	2 cut(s)	479, 720
Bme18I	GGWCC	1 cut(s)	607
BmgBI	CACGTC	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	163, 607
BmiI	GGNNCC	2 cut(s)	123, 165
BmrFI	CCNGG	2 cut(s)	479, 720
BmsI	GCATC	2 cut(s)	278, 573
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	2 cut(s)	208, 390
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	65
Bsa29I	ATCGAT	1 cut(s)	460
BsaJI	CCNNGG	5 cut(s)	192, 478, 559, 610, 639
Bsc4I	CCNNNNNNNGG	4 cut(s)	478, 479, 499, 658
Bse118I	RCCGGY	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	479, 720
BseCI	ATCGAT	1 cut(s)	460
BseDI	CCNNGG	5 cut(s)	192, 478, 559, 610, 639
BseGI	GGATG	3 cut(s)	202, 293, 715
BseLI	CCNNNNNNNGG	4 cut(s)	478, 479, 499, 658
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	66, 620
BseRI	GAGGAG	1 cut(s)	682
BseXI	GCAGC	5 cut(s)	64, 67, 117, 376, 691
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	698
Bsh1285I	CGRYCG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	121
BshVI	ATCGAT	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	4 cut(s)	478, 479, 499, 658
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	2 cut(s)	211, 506
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	23, 494
Bsp143I	GATC	4 cut(s)	280, 323, 356, 461
BspACI	CCGC	9 cut(s)	69, 80, 125, 128, 167, 171, 174, 180, 682
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	67, 621
BspDI	ATCGAT	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	123, 165
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	5 cut(s)	192, 478, 559, 610, 639
BssMI	GATC	4 cut(s)	280, 323, 356, 461
BssT1I	CCWWGG	4 cut(s)	192, 559, 610, 639
Bst2UI	CCWGG	2 cut(s)	479, 720
Bst4CI	ACNGT	3 cut(s)	62, 121, 625
BstC8I	GCNNGC	2 cut(s)	32, 171
BstDEI	CTNAG	2 cut(s)	75, 629
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	3 cut(s)	202, 293, 715
BstH2I	RGCGCY	2 cut(s)	75, 231
BstHHI	GCGC	3 cut(s)	74, 230, 319
BstKTI	GATC	4 cut(s)	283, 326, 359, 464
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	4 cut(s)	280, 323, 356, 461
BstMCI	CGRYCG	1 cut(s)	464
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 130, 170, 179, 375, 489
BstNI	CCWGG	2 cut(s)	479, 720
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	477, 718
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	5 cut(s)	64, 67, 117, 376, 691
Bsu15I	ATCGAT	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	164
BsuTUI	ATCGAT	1 cut(s)	460
BtrI	CACGTC	1 cut(s)	541
BtsCI	GGATG	3 cut(s)	202, 293, 715
Cac8I	GCNNGC	2 cut(s)	32, 171
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	3 cut(s)	74, 230, 319
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	163, 607
ClaI	ATCGAT	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	626
CviAII	CATG	3 cut(s)	233, 327, 653
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	2 cut(s)	75, 629
DpnI	GATC	4 cut(s)	282, 325, 358, 463
DpnII	GATC	4 cut(s)	280, 323, 356, 461
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	4 cut(s)	192, 559, 610, 639
Eco24I	GRGCYC	2 cut(s)	23, 494
Eco47I	GGWCC	1 cut(s)	607
Eco47III	AGCGCT	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	21
Eco91I	GGTNACC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	21
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	477, 718
EcoT14I	CCWWGG	4 cut(s)	192, 559, 610, 639
EcoT38I	GRGCYC	2 cut(s)	23, 494
ErhI	CCWWGG	4 cut(s)	192, 559, 610, 639
FaeI	CATG	3 cut(s)	236, 330, 656
FaiI	YATR	5 cut(s)	234, 328, 332, 488, 654
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	3 cut(s)	232, 326, 652
FauI	CCCGC	3 cut(s)	174, 178, 675
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	9 cut(s)	53, 56, 70, 125, 128, 131, 174, 390, 680
FokI	GGATG	3 cut(s)	209, 300, 702
FriOI	GRGCYC	2 cut(s)	23, 494
Fsp4HI	GCNGC	9 cut(s)	53, 56, 70, 125, 128, 131, 174, 390, 680
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	3 cut(s)	73, 229, 318
GluI	GCNGC	9 cut(s)	53, 56, 70, 125, 128, 131, 174, 390, 680
GsaI	CCCAGC	1 cut(s)	418
GsuI	CTGGAG	2 cut(s)	208, 390
HaeII	RGCGCY	2 cut(s)	75, 231
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	3 cut(s)	74, 230, 319
Hin1II	CATG	3 cut(s)	236, 330, 656
Hin6I	GCGC	3 cut(s)	72, 228, 317
HinP1I	GCGC	3 cut(s)	72, 228, 317
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	2 cut(s)	98, 410
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	305, 688
Hpy188I	TCNGA	2 cut(s)	151, 287
Hpy188III	TCNNGA	5 cut(s)	38, 95, 216, 233, 407
Hpy8I	GTNNAC	2 cut(s)	305, 688
Hpy99I	CGWCG	2 cut(s)	143, 146
HpyCH4III	ACNGT	3 cut(s)	62, 121, 625
HpyCH4IV	ACGT	2 cut(s)	138, 540
HpyCH4V	TGCA	3 cut(s)	243, 572, 679
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 130, 170, 179, 375, 489
HpyF3I	CTNAG	2 cut(s)	75, 629
HpySE526I	ACGT	2 cut(s)	138, 540
Hsp92II	CATG	3 cut(s)	236, 330, 656
HspAI	GCGC	3 cut(s)	72, 228, 317
Kzo9I	GATC	4 cut(s)	280, 323, 356, 461
Lsp1109I	GCAGC	5 cut(s)	64, 67, 117, 376, 691
LweI	GCATC	2 cut(s)	278, 573
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	138, 540
MaeIII	GTNAC	2 cut(s)	62, 82
MalI	GATC	4 cut(s)	282, 325, 358, 463
MboI	GATC	4 cut(s)	280, 323, 356, 461
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	23, 494
MluCI	AATT	5 cut(s)	25, 90, 184, 427, 444
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	9 cut(s)	45, 70, 97, 106, 293, 376, 527, 660, 714
MseI	TTAA	2 cut(s)	201, 582
MspA1I	CMGCKG	2 cut(s)	130, 682
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	479, 720
Mva1269I	GAATGC	2 cut(s)	211, 506
MvaI	CCWGG	2 cut(s)	479, 720
MwoI	GCNNNNNNNGC	6 cut(s)	27, 130, 170, 179, 375, 489
NdeII	GATC	4 cut(s)	280, 323, 356, 461
NlaIII	CATG	3 cut(s)	236, 330, 656
NlaIV	GGNNCC	2 cut(s)	123, 165
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	2 cut(s)	211, 506
PfeI	GAWTC	2 cut(s)	98, 410
PkrI	GCNGC	9 cut(s)	54, 57, 71, 126, 129, 132, 175, 391, 681
Ple19I	CGATCG	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	477, 718
PspEI	GGTNACC	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	2 cut(s)	477, 718
PspN4I	GGNNCC	2 cut(s)	123, 165
PspPI	GGNCC	2 cut(s)	163, 607
PstI	CTGCAG	1 cut(s)	574
PvuI	CGATCG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	201, 582
SatI	GCNGC	9 cut(s)	53, 56, 70, 125, 128, 131, 174, 390, 680
Sau3AI	GATC	4 cut(s)	280, 323, 356, 461
Sau96I	GGNCC	2 cut(s)	163, 607
ScrFI	CCNGG	2 cut(s)	479, 720
SduI	GDGCHC	2 cut(s)	23, 494
SfaNI	GCATC	2 cut(s)	278, 573
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	607
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	25, 90, 184, 427, 444
SsiI	CCGC	9 cut(s)	69, 80, 125, 128, 167, 171, 174, 180, 682
SspMI	CTAG	1 cut(s)	560
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	477, 718
StyI	CCWWGG	4 cut(s)	192, 559, 610, 639
TaaI	ACNGT	3 cut(s)	62, 121, 625
TaiI	ACGT	2 cut(s)	141, 543
TaqI	TCGA	3 cut(s)	298, 460, 665
TasI	AATT	5 cut(s)	25, 90, 184, 427, 444
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	4 cut(s)	72, 127, 130, 176
TfiI	GAWTC	2 cut(s)	98, 410
Tru1I	TTAA	2 cut(s)	201, 582
Tru9I	TTAA	2 cut(s)	201, 582
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	5 cut(s)	52, 55, 130, 389, 679
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	249, 282
TspGWI	ACGGA	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	607
XmaJI	CCTAGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	687
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.