Rh7CG090900

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004996
Physical Location & Seq
Reverse (-)
6832272 .. 6834606
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG090900.1

Sequence Viewer

Length: 624 bp
ATGAGCAATGACACGGAGACCTCAAATTGCGAGCCTGCTGACCTTGAGAAGCAGCAGCACCGTGACGGCGGCGCTGAGGCGGTCACCTCAATTCCCGATTCTTCTGCCGTTGAGGATACGGTGCCGCCGCTGCTGAACGTCGTCGTTTCCGAACCACCACCGGCCCCGCCCGCCGCATCCACCGCCAATTCGTCCAAGGAGGTTAAGGGACAGCATTCCAGAAACTCCAGCGCTCACGAACAATGCAGGGTGTGTCAGCAGGATAAAGATGAAGCTTTGATTGATCTCGGATGCCATTGTCGAGGTGAACTTGCGAAAGCGCACAGATCATGTATAGACACTTGGTTTCAATCCAAAGGATCAAACAAATGCGAGATTTGCCAAGAGGTAGCTGCGAATGTGTCATCTCCAGAATCCCAGCCAACTACAAATTATTGGGTTTGGAGAATTGAAACAACCTATCGATCGCAAAACCCAGGCCAGGGCTGTATGAGCCCACTTTGGGTGGCATTCTCAATCCTCATTGGTGGTCTGCTGTTGGACGTGCTAATATCTGCCACCCTAGGCATCTCTGCAGTTCCCATTAACATTATCATCGGTATGCTTTTGCATGTTAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

207

Amino Acids

22.3

Weight (kDa)

4.95

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 82 - 127 4.8e-12 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 8 cut(s) 69, 80, 125, 128, 167, 171, 174, 183
AclWI GGATC 1 cut(s) 367
AfeI AGCGCT 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 481, 482, 502
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 2 cut(s) 350, 452
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 2 cut(s) 475, 480
AluBI AGCT 2 cut(s) 275, 392
AluI AGCT 2 cut(s) 275, 392
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 367
Aor51HI AGCGCT 1 cut(s) 232
AoxI GGCC 2 cut(s) 162, 478
ApeKI GCWGC 4 cut(s) 52, 55, 130, 392
AspA2I CCTAGG 1 cut(s) 562
AspLEI GCGC 3 cut(s) 74, 233, 322
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 76, 317
AvrII CCTAGG 1 cut(s) 562
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 497
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 4 cut(s) 64, 67, 117, 379
BceAI ACGGC 2 cut(s) 82, 92
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 2 cut(s) 477, 482
BciVI GTATCC 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 1 cut(s) 573
BfoI RGCGCY 2 cut(s) 75, 234
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 393
BlnI CCTAGG 1 cut(s) 562
BlsI GCNGC 8 cut(s) 54, 57, 71, 126, 129, 132, 175, 394
Bme1390I CCNGG 2 cut(s) 477, 482
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 123, 165
BmrFI CCNGG 2 cut(s) 477, 482
BmsI GCATC 3 cut(s) 185, 281, 576
BpmI CTGGAG 2 cut(s) 211, 393
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 195, 475, 481, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 482, 502
Bse118I RCCGGY 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 2 cut(s) 477, 482
BseCI ATCGAT 1 cut(s) 463
BseDI CCNNGG 4 cut(s) 195, 475, 481, 562
BseGI GGATG 2 cut(s) 176, 296
BseLI CCNNNNNNNGG 3 cut(s) 481, 482, 502
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 4 cut(s) 64, 67, 117, 379
BseYI CCCAGC 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 467
BshFI GGCC 2 cut(s) 164, 480
BshNI GGYRCC 1 cut(s) 121
BshVI ATCGAT 1 cut(s) 463
BsiEI CGRYCG 1 cut(s) 467
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 3 cut(s) 481, 482, 502
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 2 cut(s) 214, 509
BsnI GGCC 2 cut(s) 164, 480
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 4 cut(s) 283, 326, 359, 464
BspACI CCGC 8 cut(s) 69, 80, 125, 128, 167, 171, 174, 183
BspANI GGCC 2 cut(s) 164, 480
BspCNI CTCAG 1 cut(s) 67
BspDI ATCGAT 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 123, 165
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 4 cut(s) 195, 475, 481, 562
BssMI GATC 4 cut(s) 283, 326, 359, 464
BssT1I CCWWGG 2 cut(s) 195, 562
Bst2UI CCWGG 2 cut(s) 477, 482
Bst4CI ACNGT 2 cut(s) 62, 121
BstC8I GCNNGC 3 cut(s) 32, 36, 171
BstDEI CTNAG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 176, 296
BstH2I RGCGCY 2 cut(s) 75, 234
BstHHI GCGC 3 cut(s) 74, 233, 322
BstKTI GATC 4 cut(s) 286, 329, 362, 467
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 4 cut(s) 283, 326, 359, 464
BstMCI CGRYCG 1 cut(s) 467
BstMWI GCNNNNNNNGC 5 cut(s) 130, 170, 182, 378, 492
BstNI CCWGG 2 cut(s) 477, 482
BstNSI RCATGY 2 cut(s) 614, 622
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 475, 480
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 4 cut(s) 64, 67, 117, 379
Bsu15I ATCGAT 1 cut(s) 463
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 164, 480
BsuTUI ATCGAT 1 cut(s) 463
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 2 cut(s) 176, 296
Cac8I GCNNGC 3 cut(s) 32, 36, 171
CfoI GCGC 3 cut(s) 74, 233, 322
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 463
CviAII CATG 3 cut(s) 330, 611, 619
CviJI RGCY 8 cut(s) 34, 164, 275, 392, 421, 480, 486, 495
CviKI_1 RGCY 8 cut(s) 34, 164, 275, 392, 421, 480, 486, 495
DdeI CTNAG 1 cut(s) 75
DpnI GATC 4 cut(s) 285, 328, 361, 466
DpnII GATC 4 cut(s) 283, 326, 359, 464
Eco130I CCWWGG 2 cut(s) 195, 562
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 1 cut(s) 11
Eco47III AGCGCT 1 cut(s) 232
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 475, 480
EcoT14I CCWWGG 2 cut(s) 195, 562
EcoT38I GRGCYC 1 cut(s) 497
ErhI CCWWGG 2 cut(s) 195, 562
FaeI CATG 3 cut(s) 333, 614, 622
FaiI YATR 6 cut(s) 331, 335, 491, 602, 612, 620
FaqI GGGAC 1 cut(s) 222
FatI CATG 3 cut(s) 329, 610, 618
FauI CCCGC 2 cut(s) 174, 178
Fnu4HI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 393
FokI GGATG 2 cut(s) 163, 303
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 393
FspBI CTAG 1 cut(s) 563
GlaI GCGC 3 cut(s) 73, 232, 321
GluI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 393
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 2 cut(s) 211, 393
HaeII RGCGCY 2 cut(s) 75, 234
HaeIII GGCC 2 cut(s) 164, 480
HapII CCGG 1 cut(s) 161
HhaI GCGC 3 cut(s) 74, 233, 322
Hin1II CATG 3 cut(s) 333, 614, 622
Hin6I GCGC 3 cut(s) 72, 231, 320
HinP1I GCGC 3 cut(s) 72, 231, 320
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 2 cut(s) 98, 413
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 76, 317
Hpy166II GTNNAC 2 cut(s) 308, 616
Hpy188I TCNGA 2 cut(s) 151, 290
Hpy188III TCNNGA 4 cut(s) 95, 219, 236, 410
Hpy8I GTNNAC 2 cut(s) 308, 616
Hpy99I CGWCG 2 cut(s) 143, 146
HpyCH4III ACNGT 2 cut(s) 62, 121
HpyCH4IV ACGT 2 cut(s) 138, 543
HpyCH4V TGCA 3 cut(s) 246, 575, 610
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 170, 182, 378, 492
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 138, 543
Hsp92II CATG 3 cut(s) 333, 614, 622
HspAI GCGC 3 cut(s) 72, 231, 320
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 4 cut(s) 283, 326, 359, 464
Lsp1109I GCAGC 4 cut(s) 64, 67, 117, 379
LweI GCATC 3 cut(s) 185, 281, 576
MaeI CTAG 1 cut(s) 563
MaeII ACGT 2 cut(s) 138, 543
MaeIII GTNAC 2 cut(s) 62, 82
MalI GATC 4 cut(s) 285, 328, 361, 466
MboI GATC 4 cut(s) 283, 326, 359, 464
MboII GAAGA 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 5 cut(s) 25, 90, 187, 430, 447
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 8 cut(s) 31, 70, 97, 106, 193, 296, 379, 530
MseI TTAA 3 cut(s) 204, 585, 615
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 477, 482
Mva1269I GAATGC 2 cut(s) 214, 509
MvaI CCWGG 2 cut(s) 477, 482
MwoI GCNNNNNNNGC 5 cut(s) 130, 170, 182, 378, 492
NdeII GATC 4 cut(s) 283, 326, 359, 464
NlaIII CATG 3 cut(s) 333, 614, 622
NlaIV GGNNCC 2 cut(s) 123, 165
NmuCI GTSAC 2 cut(s) 62, 82
NspI RCATGY 2 cut(s) 614, 622
PciI ACATGT 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 2 cut(s) 214, 509
PfeI GAWTC 2 cut(s) 98, 413
PkrI GCNGC 8 cut(s) 54, 57, 71, 126, 129, 132, 175, 394
Ple19I CGATCG 1 cut(s) 467
PscI ACATGT 1 cut(s) 618
Psp6I CCWGG 2 cut(s) 475, 480
PspEI GGTNACC 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 2 cut(s) 475, 480
PspN4I GGNNCC 2 cut(s) 123, 165
PspPI GGNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 577
PvuI CGATCG 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 599
SaqAI TTAA 3 cut(s) 204, 585, 615
SatI GCNGC 8 cut(s) 53, 56, 70, 125, 128, 131, 174, 393
Sau3AI GATC 4 cut(s) 283, 326, 359, 464
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 477, 482
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 3 cut(s) 185, 281, 576
SfcI CTRYAG 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 5 cut(s) 25, 90, 187, 430, 447
SsiI CCGC 8 cut(s) 69, 80, 125, 128, 167, 171, 174, 183
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 475, 480
StyI CCWWGG 2 cut(s) 195, 562
TaaI ACNGT 2 cut(s) 62, 121
TaiI ACGT 2 cut(s) 141, 546
TaqI TCGA 2 cut(s) 301, 463
TasI AATT 5 cut(s) 25, 90, 187, 430, 447
TauI GCSGC 4 cut(s) 72, 127, 130, 176
TfiI GAWTC 2 cut(s) 98, 413
Tru1I TTAA 3 cut(s) 204, 585, 615
Tru9I TTAA 3 cut(s) 204, 585, 615
TseFI GTSAC 2 cut(s) 62, 82
TseI GCWGC 4 cut(s) 52, 55, 130, 392
Tsp45I GTSAC 2 cut(s) 62, 82
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 29
XceI RCATGY 2 cut(s) 614, 622
XmaJI CCTAGG 1 cut(s) 562
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.