Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004416

Physical Location & Seq

Genomic Coordinates Forward (+)

19440763 .. 19441386

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGACTCTGTTGATGATTACATTCCGATTCCTCAGAGGCAGACTGAGCTGCCATTTTTGATGGCCATCGAAGATGTGTTTTCGATCACTGGCCGTGGCACTGTCGCCACTGGCCGTGTCGAGAGGGGGAAGGTTAAGGTCGGAGACACCGTCGACATTGTTGGCTTGAAGGACACCAGGAACACAACTGTCACCGGTGTCGAAATGTTTCAGAAAATTCTTGACGATGCCATGGCTGGTGACAATGTAGGGTTGTTGCTTAGGGGTATTCAGAAGATTGATATCCAGAGAGGGATGGTTTTGGCCAAACCCGGGACTATTACCCCGCATACCAAATTCGAGGCGATTGTGTATGTGTTGAAGAAGGAAGAGGGGGGCAGGCATTCACCGTTCTTCTCGGGTTACAGGCCGCAGTTTTACATGAGGACTACTGATGTCACCGGGAAGGTGACTTCGATTATGAACGATAAGGATGAGGAGTCGAAGATGGTGATGCCTGGCGATCGCGTTAAGATTGTGGTCGAGCTGATTGTTCCGGTGGCCTGTGAGCAGGGGATGAGGTTTGCTATCAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATTCAATCCATTATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0009295 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0055035 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

208

Amino Acids

22.78

Weight (kDa)

6.19

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU_D2	PF03144	33 - 102	3e-20	Elongation factor Tu domain 2
GTP_EFTU_D3	PF03143	106 - 205	1.6e-40	Elongation factor Tu C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20360 AT4G20360
fragaria_vesca	FvH4_5g06350 FvH4_6g51880
malus_domestica	MD06G1165400.v1.1 MD09G1022300.v1.1 MD14G1170900.v1.1
prunus_persica	Prupe.3G294300_v2.0.a1 Prupe.5G165000_v2.0.a1 Prupe.5G165000_v2.0.a1
pyrus_communis	pycom06g14780 pycom111g01870 pycom14g14280
rosa_chinensis	RchiOBHm_Chr2g0173371 RchiOBHm_Chr7g0192491
rosa_laevigata	RLG00000004361 RLG00000022183
rosa_multiflora	Rmu_sc0003108.1_g000029 Rmu_sc0014554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078950 Rroxscaffold_3G00262980
rosa_rugosa	Rorug02G0567600 Rorug07G0001900
rosa_samantha	Rh2AG648100 Rh2BG658700 Rh2DG674100 Rh7AG125900 Rh7BG128200 Rh7CG129800 Rh7DG129700
rosa_wichuraiana	Rw2G053200 Rw7G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	507
AciI	CCGC	2 cut(s)	326, 410
AcoI	YGGCCR	4 cut(s)	63, 91, 112, 303
AcsI	RAATTY	2 cut(s)	216, 335
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	169, 361, 608
AjnI	CCWGG	2 cut(s)	176, 496
AluBI	AGCT	3 cut(s)	49, 526, 596
AluI	AGCT	3 cut(s)	49, 526, 596
Alw26I	GTCTC	1 cut(s)	138
Ama87I	CYCGRG	2 cut(s)	311, 397
AoxI	GGCC	6 cut(s)	63, 91, 112, 303, 407, 540
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	2 cut(s)	216, 335
AsiGI	ACCGGT	1 cut(s)	194
AsiSI	GCGATCGC	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	207
AsuC2I	CCSGG	3 cut(s)	312, 313, 442
AsuHPI	GGTGA	6 cut(s)	184, 251, 378, 430, 460, 502
AvaI	CYCGRG	2 cut(s)	311, 397
BalI	TGGCCA	2 cut(s)	65, 305
BbsI	GAAGAC	1 cut(s)	590
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	4 cut(s)	55, 74, 289, 481
BceAI	ACGGC	2 cut(s)	78, 99
BciT130I	CCWGG	2 cut(s)	178, 498
BcnI	CCSGG	3 cut(s)	312, 313, 442
BcoDI	GTCTC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	50, 410
BlsI	GCNGC	2 cut(s)	51, 411
Bme1390I	CCNGG	5 cut(s)	178, 312, 313, 442, 498
BmeT110I	CYCGRG	2 cut(s)	311, 397
BmrFI	CCNGG	5 cut(s)	178, 312, 313, 442, 498
BmsI	GCATC	2 cut(s)	217, 483
BpiI	GAAGAC	1 cut(s)	590
Bpu10I	CCTNAGC	1 cut(s)	260
BpuMI	CCSGG	3 cut(s)	312, 313, 442
BsaBI	GATNNNNATC	2 cut(s)	65, 281
BsaJI	CCNNGG	3 cut(s)	94, 231, 311
BsaWI	WCCGGW	2 cut(s)	194, 535
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	94, 115
Bse8I	GATNNNNATC	2 cut(s)	65, 281
BseBI	CCWGG	2 cut(s)	178, 498
BseDI	CCNNGG	3 cut(s)	94, 231, 311
BseGI	GGATG	3 cut(s)	300, 478, 561
BseJI	GATNNNNATC	2 cut(s)	65, 281
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	36, 47
BseNI	ACTGG	2 cut(s)	94, 115
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	6 cut(s)	65, 93, 114, 305, 409, 542
BshTI	ACCGGT	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	505
BsiHKCI	CYCGRG	2 cut(s)	311, 397
BsiSI	CCGG	4 cut(s)	195, 312, 441, 536
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	6 cut(s)	65, 93, 114, 305, 409, 542
BsoBI	CYCGRG	2 cut(s)	311, 397
Bsp143I	GATC	2 cut(s)	84, 502
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	2 cut(s)	326, 410
BspANI	GGCC	6 cut(s)	65, 93, 114, 305, 409, 542
BspCNI	CTCAG	2 cut(s)	37, 46
BspFNI	CGCG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	94, 115
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	94, 231, 311
BssMI	GATC	2 cut(s)	84, 502
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	178, 498
Bst4CI	ACNGT	5 cut(s)	103, 151, 190, 390, 589
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	3 cut(s)	33, 45, 260
BstDSI	CCRYGG	2 cut(s)	94, 231
BstF5I	GGATG	3 cut(s)	300, 478, 561
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	2 cut(s)	87, 505
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	84, 502
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	178, 498
BstSCI	CCNGG	5 cut(s)	176, 310, 311, 440, 496
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	590
BsuRI	GGCC	6 cut(s)	65, 93, 114, 305, 409, 542
BtgI	CCRYGG	2 cut(s)	94, 231
BtsCI	GGATG	3 cut(s)	300, 478, 561
BtsIMutI	CAGTG	3 cut(s)	87, 99, 108
Cac8I	GCNNGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	194
Cfr9I	CCCGGG	1 cut(s)	311
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	2 cut(s)	232, 421
DdeI	CTNAG	3 cut(s)	33, 45, 260
DpnI	GATC	2 cut(s)	86, 504
DpnII	GATC	2 cut(s)	84, 502
EaeI	YGGCCR	4 cut(s)	63, 91, 112, 303
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	283
Eco88I	CYCGRG	2 cut(s)	311, 397
EcoRII	CCWGG	2 cut(s)	176, 496
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	235, 424
FaiI	YATR	5 cut(s)	233, 330, 354, 422, 461
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	231, 420
FauI	CCCGC	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	50, 410
FokI	GGATG	3 cut(s)	307, 485, 568
Fsp4HI	GCNGC	2 cut(s)	50, 410
GluI	GCNGC	2 cut(s)	50, 410
HaeIII	GGCC	6 cut(s)	65, 93, 114, 305, 409, 542
HapII	CCGG	4 cut(s)	195, 312, 441, 536
Hin1II	CATG	2 cut(s)	235, 424
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	3 cut(s)	5, 28, 479
HpaII	CCGG	4 cut(s)	195, 312, 441, 536
HphI	GGTGA	6 cut(s)	184, 251, 378, 430, 460, 502
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	6 cut(s)	27, 36, 143, 213, 273, 572
Hpy188III	TCNNGA	3 cut(s)	121, 221, 286
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	5 cut(s)	124, 163, 358, 439, 569
HpyCH4III	ACNGT	5 cut(s)	103, 151, 190, 390, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	3 cut(s)	33, 45, 260
Hsp92II	CATG	2 cut(s)	235, 424
Kzo9I	GATC	2 cut(s)	84, 502
LmnI	GCTCC	1 cut(s)	593
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	2 cut(s)	217, 483
MaeIII	GTNAC	5 cut(s)	190, 239, 401, 436, 448
MalI	GATC	2 cut(s)	86, 504
MboI	GATC	2 cut(s)	84, 502
MboII	GAAGA	7 cut(s)	83, 286, 373, 380, 385, 496, 595
MlsI	TGGCCA	2 cut(s)	65, 305
MluCI	AATT	2 cut(s)	216, 335
MluNI	TGGCCA	2 cut(s)	65, 305
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	121, 571
Mox20I	TGGCCA	2 cut(s)	65, 305
MroXI	GAANNNNTTC	1 cut(s)	207
MscI	TGGCCA	2 cut(s)	65, 305
MseI	TTAA	2 cut(s)	135, 510
Msp20I	TGGCCA	2 cut(s)	65, 305
MspI	CCGG	4 cut(s)	195, 312, 441, 536
MspR9I	CCNGG	5 cut(s)	178, 312, 313, 442, 498
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	178, 498
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	3 cut(s)	312, 313, 442
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	84, 502
NlaIII	CATG	2 cut(s)	235, 424
NmuCI	GTSAC	4 cut(s)	190, 239, 436, 448
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	51, 411
Ple19I	CGATCG	1 cut(s)	505
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp6I	CCWGG	2 cut(s)	176, 496
PspGI	CCWGG	2 cut(s)	176, 496
PsyI	GACNNNGTC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	505
RgaI	GCGATCGC	1 cut(s)	505
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	135, 510
SatI	GCNGC	2 cut(s)	50, 410
Sau3AI	GATC	2 cut(s)	84, 502
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	5 cut(s)	178, 312, 313, 442, 498
SetI	ASST	7 cut(s)	51, 135, 141, 450, 528, 563, 598
SfaAI	GCGATCGC	1 cut(s)	505
SfaNI	GCATC	2 cut(s)	217, 483
SgfI	GCGATCGC	1 cut(s)	505
SgrAI	CRCCGGYG	1 cut(s)	194
SmaI	CCCGGG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	216, 335
SsiI	CCGC	2 cut(s)	326, 410
StyD4I	CCNGG	5 cut(s)	176, 310, 311, 440, 496
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	5 cut(s)	103, 151, 190, 390, 589
TaqI	TCGA	9 cut(s)	69, 83, 120, 153, 201, 339, 455, 482, 522
TasI	AATT	2 cut(s)	216, 335
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	135, 510
Tru9I	TTAA	2 cut(s)	135, 510
TscAI	CASTG	3 cut(s)	94, 106, 115
TseFI	GTSAC	4 cut(s)	190, 239, 436, 448
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	4 cut(s)	190, 239, 436, 448
TspDTI	ATGAA	1 cut(s)	476
TspMI	CCCGGG	1 cut(s)	311
TspRI	CASTG	3 cut(s)	94, 106, 115
Tth111I	GACNNNGTC	1 cut(s)	149
XapI	RAATTY	2 cut(s)	216, 335
XmaI	CCCGGG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.