Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003108.1

Orthogroup ID

OG0004416

Physical Location & Seq

Genomic Coordinates Forward (+)

112636 .. 113271

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003108.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggcaatctcaacagcagcagcagcttcctcaaagctcacatacccttatgcctcctcaccttcttcaaccccttgtttctcaattagacccacttccaagctcacccacctctcctcttccttcctaaacccctccaccatcctccacctcactccctcctccacgcgccaccacctccaccaccaccccacgcgccgctccttcaccgtcaaggccgcgcgtggcaagttcgagcgcaagaagccccacgtcaacatcggcaccatcggccacgtcgaccacggcaagaccaccctcagagggatggttttggctaagcccgggactattaccccgcatactaagtttgaggccattgtctatgtgttgaagaaggaagagggtggtaggcattccccctttttctcgggttataggccacagttttacatgaggactactgatgtcaccggtagagtgactcagattatgaatgataaggatgaggagtccaagatggttatgcctggtgatcgtgtcaaaattattgtcgaattgattgtgcctgtggcttgtgagtccggaatgaggtttgctatcagagaaggagggaagactgttggagcaggtgttattggagccatacttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0009295 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0055035 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

211

Amino Acids

23.12

Weight (kDa)

10.09

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20360 AT4G20360
fragaria_vesca	FvH4_5g06350 FvH4_6g51880
malus_domestica	MD06G1165400.v1.1 MD09G1022300.v1.1 MD14G1170900.v1.1
prunus_persica	Prupe.3G294300_v2.0.a1 Prupe.5G165000_v2.0.a1 Prupe.5G165000_v2.0.a1
pyrus_communis	pycom06g14780 pycom111g01870 pycom14g14280
rosa_chinensis	RchiOBHm_Chr2g0173371 RchiOBHm_Chr7g0192491
rosa_laevigata	RLG00000004361 RLG00000022183
rosa_multiflora	Rmu_sc0003108.1_g000029 Rmu_sc0014554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078950 Rroxscaffold_3G00262980
rosa_rugosa	Rorug02G0567600 Rorug07G0001900
rosa_samantha	Rh2AG648100 Rh2BG658700 Rh2DG674100 Rh7AG125900 Rh7BG128200 Rh7CG129800 Rh7DG129700
rosa_wichuraiana	Rw2G053200 Rw7G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	4 cut(s)	169, 196, 221, 223
AccIII	TCCGGA	1 cut(s)	563
AciI	CCGC	3 cut(s)	199, 219, 338
AcoI	YGGCCR	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	303, 570
AgeI	ACCGGT	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	69, 373
AjiI	CACGTC	2 cut(s)	253, 277
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	3 cut(s)	26, 37, 103
AluI	AGCT	3 cut(s)	26, 37, 103
Ama87I	CYCGRG	2 cut(s)	323, 409
Aor13HI	TCCGGA	1 cut(s)	563
AoxI	GGCC	4 cut(s)	216, 271, 354, 419
ApeKI	GCWGC	3 cut(s)	17, 20, 23
ArsI	GACNNNNNNTTYG	2 cut(s)	516, 548
AsiGI	ACCGGT	1 cut(s)	452
AspLEI	GCGC	4 cut(s)	171, 198, 223, 240
AsuC2I	CCSGG	2 cut(s)	324, 325
AsuHPI	GGTGA	5 cut(s)	51, 97, 199, 442, 524
AvaI	CYCGRG	2 cut(s)	323, 409
BanI	GGYRCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	602
BbvI	GCAGC	3 cut(s)	29, 32, 35
BccI	CCATC	4 cut(s)	149, 275, 301, 493
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	2 cut(s)	324, 325
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	5 cut(s)	18, 21, 24, 199, 219
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	5 cut(s)	19, 22, 25, 200, 220
Bme1390I	CCNGG	3 cut(s)	324, 325, 510
BmeT110I	CYCGRG	2 cut(s)	323, 409
BmgBI	CACGTC	2 cut(s)	253, 277
BmiI	GGNNCC	2 cut(s)	265, 622
BmrFI	CCNGG	3 cut(s)	324, 325, 510
BpiI	GAAGAC	1 cut(s)	602
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuMI	CCSGG	2 cut(s)	324, 325
BsaJI	CCNNGG	2 cut(s)	283, 323
BsaWI	WCCGGW	2 cut(s)	452, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 570
Bse118I	RCCGGY	1 cut(s)	452
BseAI	TCCGGA	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	283, 323
BseGI	GGATG	3 cut(s)	141, 312, 490
BseLI	CCNNNNNNNGG	2 cut(s)	303, 570
BseMII	CTCAG	2 cut(s)	313, 479
BseRI	GAGGAG	4 cut(s)	46, 106, 151, 503
BseXI	GCAGC	3 cut(s)	29, 32, 35
Bsh1236I	CGCG	4 cut(s)	169, 196, 221, 223
BshFI	GGCC	4 cut(s)	218, 273, 356, 421
BshNI	GGYRCC	1 cut(s)	263
BshTI	ACCGGT	1 cut(s)	452
BsiHKCI	CYCGRG	2 cut(s)	323, 409
BsiSI	CCGG	3 cut(s)	324, 453, 564
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	303, 570
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	4 cut(s)	218, 273, 356, 421
BsoBI	CYCGRG	2 cut(s)	323, 409
Bsp13I	TCCGGA	1 cut(s)	563
Bsp143I	GATC	1 cut(s)	514
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	3 cut(s)	199, 219, 338
BspANI	GGCC	4 cut(s)	218, 273, 356, 421
BspCNI	CTCAG	2 cut(s)	312, 478
BspEI	TCCGGA	1 cut(s)	563
BspFNI	CGCG	4 cut(s)	169, 196, 221, 223
BspLI	GGNNCC	2 cut(s)	265, 622
BspMI	ACCTGC	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	283, 323
BssMI	GATC	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	211, 426, 601
Bst6I	CTCTTC	2 cut(s)	124, 375
BstDEI	CTNAG	4 cut(s)	299, 318, 345, 465
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	3 cut(s)	141, 312, 490
BstFNI	CGCG	4 cut(s)	169, 196, 221, 223
BstHHI	GCGC	4 cut(s)	171, 198, 223, 240
BstKTI	GATC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	514
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 244, 270
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	322, 323, 508
BstUI	CGCG	4 cut(s)	169, 196, 221, 223
BstV1I	GCAGC	3 cut(s)	29, 32, 35
BstV2I	GAAGAC	1 cut(s)	602
BsuRI	GGCC	4 cut(s)	218, 273, 356, 421
BtgI	CCRYGG	1 cut(s)	283
BtrI	CACGTC	2 cut(s)	253, 277
BtsCI	GGATG	3 cut(s)	141, 312, 490
BveI	ACCTGC	1 cut(s)	599
CfoI	GCGC	4 cut(s)	171, 198, 223, 240
Cfr10I	RCCGGY	1 cut(s)	452
Cfr9I	CCCGGG	1 cut(s)	323
CspAI	ACCGGT	1 cut(s)	452
CviAII	CATG	1 cut(s)	433
DdeI	CTNAG	4 cut(s)	299, 318, 345, 465
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	124, 375
EarI	CTCTTC	2 cut(s)	124, 375
Eco88I	CYCGRG	2 cut(s)	323, 409
EcoRII	CCWGG	1 cut(s)	508
FaeI	CATG	1 cut(s)	436
FaiI	YATR	9 cut(s)	43, 51, 342, 366, 417, 434, 473, 506, 626
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	1 cut(s)	432
FauI	CCCGC	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	5 cut(s)	18, 21, 24, 199, 219
FokI	GGATG	3 cut(s)	128, 319, 497
Fsp4HI	GCNGC	5 cut(s)	18, 21, 24, 199, 219
GlaI	GCGC	4 cut(s)	170, 197, 222, 239
GluI	GCNGC	5 cut(s)	18, 21, 24, 199, 219
HaeIII	GGCC	4 cut(s)	218, 273, 356, 421
HapII	CCGG	3 cut(s)	324, 453, 564
HhaI	GCGC	4 cut(s)	171, 198, 223, 240
Hin1II	CATG	1 cut(s)	436
Hin6I	GCGC	4 cut(s)	169, 196, 221, 238
HinP1I	GCGC	4 cut(s)	169, 196, 221, 238
HincII	GTYRAC	2 cut(s)	256, 280
HindII	GTYRAC	2 cut(s)	256, 280
HinfI	GANTC	3 cut(s)	463, 491, 560
HpaII	CCGG	3 cut(s)	324, 453, 564
HphI	GGTGA	5 cut(s)	51, 97, 199, 442, 524
Hpy166II	GTNNAC	2 cut(s)	256, 280
Hpy188I	TCNGA	3 cut(s)	302, 468, 584
Hpy188III	TCNNGA	1 cut(s)	564
Hpy8I	GTNNAC	2 cut(s)	256, 280
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	5 cut(s)	72, 133, 214, 370, 581
HpyCH4III	ACNGT	3 cut(s)	211, 426, 601
HpyCH4IV	ACGT	2 cut(s)	252, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 244, 270
HpyF3I	CTNAG	4 cut(s)	299, 318, 345, 465
HpySE526I	ACGT	2 cut(s)	252, 276
Hsp92II	CATG	1 cut(s)	436
HspAI	GCGC	4 cut(s)	169, 196, 221, 238
Kpn2I	TCCGGA	1 cut(s)	563
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	3 cut(s)	206, 605, 620
LpnPI	CCDG	7 cut(s)	337, 466, 495, 522, 561, 577, 594
Lsp1109I	GCAGC	3 cut(s)	29, 32, 35
MaeII	ACGT	2 cut(s)	252, 276
MaeIII	GTNAC	2 cut(s)	448, 460
MalI	GATC	1 cut(s)	516
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	1 cut(s)	514
MboII	GAAGA	5 cut(s)	57, 111, 385, 392, 607
MluCI	AATT	3 cut(s)	84, 525, 536
MlyI	GAGTC	3 cut(s)	457, 500, 569
MmeI	TCCRAC	1 cut(s)	583
MroI	TCCGGA	1 cut(s)	563
MspI	CCGG	3 cut(s)	324, 453, 564
MspR9I	CCNGG	3 cut(s)	324, 325, 510
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	4 cut(s)	169, 196, 221, 223
MwoI	GCNNNNNNNGC	3 cut(s)	23, 244, 270
NciI	CCSGG	2 cut(s)	324, 325
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	1 cut(s)	436
NlaIV	GGNNCC	2 cut(s)	265, 622
NmuCI	GTSAC	2 cut(s)	448, 460
PaqCI	CACCTGC	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	394
PinAI	ACCGGT	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	19, 22, 25, 200, 220
PleI	GAGTC	3 cut(s)	457, 499, 568
PpsI	GAGTC	3 cut(s)	457, 499, 568
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	265, 622
SalI	GTCGAC	1 cut(s)	278
SatI	GCNGC	5 cut(s)	18, 21, 24, 199, 219
Sau3AI	GATC	1 cut(s)	514
SchI	GAGTC	3 cut(s)	457, 500, 569
ScrFI	CCNGG	3 cut(s)	324, 325, 510
SmaI	CCCGGG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	3 cut(s)	84, 525, 536
SsiI	CCGC	3 cut(s)	199, 219, 338
StyD4I	CCNGG	3 cut(s)	322, 323, 508
TaaI	ACNGT	3 cut(s)	211, 426, 601
TaiI	ACGT	2 cut(s)	255, 279
TaqI	TCGA	3 cut(s)	234, 279, 534
TasI	AATT	3 cut(s)	84, 525, 536
TauI	GCSGC	2 cut(s)	201, 221
TseFI	GTSAC	2 cut(s)	448, 460
TseI	GCWGC	3 cut(s)	17, 20, 23
Tsp45I	GTSAC	2 cut(s)	448, 460
TspDTI	ATGAA	1 cut(s)	488
TspMI	CCCGGG	1 cut(s)	323
XmaI	CCCGGG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.