Rw7G010840

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
10086161 .. 10087598
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010840.1

Sequence Viewer

Length: 1332 bp
ATGGCAATCTCAACAGCAGCAGCAGCTTCCTCAAAGCTCACATACCCTTATGCCTCCTCACCTTCTTCAACCCCTTGTTTCTCAATTAGACCCACTTCCAAGCTCACCCACCTCTCCTCTTCCTTCCTAAACCCCTCCACCATCCTCCACCTCACTCCCTCCTCCACGCGCCACCACCACCACCCCACGCGCCGCTCCTTCACCGTCAAGGCCGCGCGTGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCATGGGCAACAGCGCCGTCAAGAAGTACGACGAAATCGACGCCGCGCCGGAGGAGCGCGCGCGCGGAATCACCATCAACACCGCCACCAACATGATCACCGGGGCGGCCCAGATGGACGGCGCCATCCTCGTCTGCTCCGGCGCCGACGGGCCAATGCCGCAGACCAAAGAGCACATCTTGCTGGCCAAGCAAGTCGGCGTGCCCAACATGGTGGTCTTCCTCAACAAACAGGACCAGGTCGACGACGAGGAGCTTCTCGAGCTCGTCGAATTGGAGGTGCGTGAGTTGCTTTCTTCATATGAGTTTCCCGGTGATGATGTGCCCATCATTTCCGGTTCGGCTTTGTTAGCACTAGAGGCTTTGATGGCCGACCCTGCTATTAAGCGTGGTGACAATAAATGGGTAGATAAGATTTATGAGCTTATGGATGCTGTTGATAGCTACATACCTATTCCGCAACGGCAGACTGATCTGCCGTTTTTGATGGCCATTGAAGATGTGTTTTCCATCACCGGCCGTGGGACTGTGGCCACCGGCCGTGTCGAGAGGGGCACCATTAAGACTGGGGATACAGTCGACATTGTTGGGTTGAAGGATACGAGAAGCACCACTGTTACCGGTGTGGAGATGTTTCAGAAGATTCTCGATGAGGCTTTGGCCGGTGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGATTGATATTCAGAGAGGGATGTTTGAGGCCATTGTCTATGTGTTGAAGAAGGAAGAGGGTGGTAGGCATTCCCCCTTTTTCTCGGGTTATAGGCCACAGTTTTACATGAGGACTACTGATGTCACCGGTAGAGTCACTCAGATTATGAATGATAAGGATGAGGAGTCCAAGATGGTTATGCCTGGTGATCGTGTCAAGATTATTGTCGAATTGATTGTGCCTGTGGCTTGTGAGTCCGGAATGAGGTTTGCTATCAGAGAAGGAGGGAAGACTGTTGGAGCAGGTGTTATTGGAGCCATACTTGAGTGA

Protein Analysis

443

Amino Acids

48.14

Weight (kDa)

6.16

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 80 - 136 2.2e-15 Elongation factor Tu GTP binding domain
GTP_EFTU PF00009 137 - 258 8.4e-26 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 282 - 348 1.3e-19 Elongation factor Tu domain 2
GTP_EFTU_D3 PF03143 348 - 441 3.8e-36 Elongation factor Tu C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1295
Acc36I ACCTGC 1 cut(s) 1295
AccB1I GGYRCC 4 cut(s) 257, 443, 464, 875
AccBSI CCGCTC 1 cut(s) 195
AccI GTMKAC 3 cut(s) 273, 564, 900
AccII CGCG 9 cut(s) 169, 190, 215, 217, 368, 381, 383, 385, 387
AccIII TCCGGA 1 cut(s) 1259
AcoI YGGCCR 8 cut(s) 265, 507, 690, 810, 838, 852, 859, 981
AcyI GRCGYC 3 cut(s) 363, 444, 465
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 310, 843, 1266
AgeI ACCGGT 2 cut(s) 941, 1148
AgsI TTSAA 4 cut(s) 69, 818, 916, 1069
AjiI CACGTC 2 cut(s) 247, 271
AjnI CCWGG 2 cut(s) 558, 1204
AluBI AGCT 7 cut(s) 26, 37, 103, 577, 586, 745, 765
AluI AGCT 7 cut(s) 26, 37, 103, 577, 586, 745, 765
Alw21I GWGCWC 2 cut(s) 498, 588
Ama87I CYCGRG 2 cut(s) 581, 1105
Aor13HI TCCGGA 1 cut(s) 1259
ApeKI GCWGC 3 cut(s) 17, 20, 23
AsiGI ACCGGT 2 cut(s) 941, 1148
AspS9I GGNCC 4 cut(s) 313, 430, 473, 556
AsuC2I CCSGG 2 cut(s) 424, 633
AvaI CYCGRG 2 cut(s) 581, 1105
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 3 cut(s) 528, 648, 878
BalI TGGCCA 3 cut(s) 509, 812, 854
BanI GGYRCC 4 cut(s) 257, 443, 464, 875
BanII GRGCYC 1 cut(s) 588
BbsI GAAGAC 2 cut(s) 532, 1298
Bbv12I GWGCWC 2 cut(s) 498, 588
BbvI GCAGC 3 cut(s) 29, 32, 35
BceAI ACGGC 7 cut(s) 295, 323, 457, 784, 800, 825, 846
BciT130I CCWGG 2 cut(s) 560, 1206
BciVI GTATCC 2 cut(s) 886, 913
BclI TGATCA 1 cut(s) 417
BcnI CCSGG 2 cut(s) 424, 633
BfaI CTAG 1 cut(s) 677
BfoI RGCGCY 3 cut(s) 339, 447, 468
BfuAI ACCTGC 1 cut(s) 1295
BfuI GTATCC 2 cut(s) 886, 913
BisI GCNGC 9 cut(s) 18, 21, 24, 193, 213, 300, 366, 429, 482
BlsI GCNGC 9 cut(s) 19, 22, 25, 194, 214, 301, 367, 430, 483
Bme1390I CCNGG 4 cut(s) 424, 560, 633, 1206
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 2 cut(s) 581, 1105
BmgBI CACGTC 2 cut(s) 247, 271
BmgT120I GGNCC 4 cut(s) 313, 430, 473, 556
BmiI GGNNCC 5 cut(s) 259, 445, 466, 877, 1318
BmrFI CCNGG 4 cut(s) 424, 560, 633, 1206
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 1 cut(s) 742
BmuI ACTGGG 1 cut(s) 897
BpiI GAAGAC 2 cut(s) 532, 1298
Bpu10I CCTNAGC 1 cut(s) 1007
BpuMI CCSGG 2 cut(s) 424, 633
BsaHI GRCGYC 3 cut(s) 363, 444, 465
BsaJI CCNNGG 5 cut(s) 277, 309, 324, 423, 841
BsaWI WCCGGW 4 cut(s) 656, 941, 1148, 1259
BsaXI ACNNNNNCTCC 2 cut(s) 1293, 1323
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 843, 1266
Bse118I RCCGGY 5 cut(s) 836, 857, 941, 983, 1148
Bse1I ACTGG 1 cut(s) 892
BseAI TCCGGA 1 cut(s) 1259
BseBI CCWGG 2 cut(s) 560, 1206
BseDI CCNNGG 5 cut(s) 277, 309, 324, 423, 841
BseGI GGATG 5 cut(s) 141, 447, 757, 1047, 1186
BseLI CCNNNNNNNGG 3 cut(s) 310, 843, 1266
BseMII CTCAG 1 cut(s) 1175
BseNI ACTGG 1 cut(s) 892
BsePI GCGCGC 3 cut(s) 379, 381, 383
BseRI GAGGAG 6 cut(s) 46, 106, 151, 389, 587, 1199
BseSI GKGCMC 3 cut(s) 528, 648, 878
BseX3I CGGCCG 2 cut(s) 838, 859
BseXI GCAGC 3 cut(s) 29, 32, 35
Bsh1236I CGCG 9 cut(s) 169, 190, 215, 217, 368, 381, 383, 385, 387
Bsh1285I CGRYCG 2 cut(s) 841, 862
BshNI GGYRCC 4 cut(s) 257, 443, 464, 875
BshTI ACCGGT 2 cut(s) 941, 1148
BsiEI CGRYCG 2 cut(s) 841, 862
BsiHKAI GWGCWC 2 cut(s) 498, 588
BsiHKCI CYCGRG 2 cut(s) 581, 1105
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 3 cut(s) 310, 843, 1266
BsmFI GGGAC 1 cut(s) 859
BsmI GAATGC 1 cut(s) 1090
BsoBI CYCGRG 2 cut(s) 581, 1105
Bsp1286I GDGCHC 5 cut(s) 498, 528, 588, 648, 878
Bsp13I TCCGGA 1 cut(s) 1259
Bsp143I GATC 3 cut(s) 417, 793, 1210
Bsp19I CCATGG 2 cut(s) 309, 324
BspCNI CTCAG 1 cut(s) 1174
BspEI TCCGGA 1 cut(s) 1259
BspFNI CGCG 9 cut(s) 169, 190, 215, 217, 368, 381, 383, 385, 387
BspLI GGNNCC 5 cut(s) 259, 445, 466, 877, 1318
BspMI ACCTGC 1 cut(s) 1295
BspT107I GGYRCC 4 cut(s) 257, 443, 464, 875
BsrBI CCGCTC 1 cut(s) 195
BsrFI RCCGGY 5 cut(s) 836, 857, 941, 983, 1148
BsrI ACTGG 1 cut(s) 892
BssAI RCCGGY 5 cut(s) 836, 857, 941, 983, 1148
BssECI CCNNGG 5 cut(s) 277, 309, 324, 423, 841
BssHII GCGCGC 3 cut(s) 379, 381, 383
BssMI GATC 3 cut(s) 417, 793, 1210
BssNI GRCGYC 3 cut(s) 363, 444, 465
BssT1I CCWWGG 2 cut(s) 309, 324
Bst2UI CCWGG 2 cut(s) 560, 1206
Bst4CI ACNGT 6 cut(s) 205, 850, 898, 937, 1122, 1297
Bst6I CTCTTC 2 cut(s) 124, 1071
BstACI GRCGYC 3 cut(s) 363, 444, 465
BstAPI GCANNNNNTGC 1 cut(s) 502
BstC8I GCNNGC 5 cut(s) 381, 383, 385, 507, 524
BstDEI CTNAG 2 cut(s) 1007, 1161
BstDSI CCRYGG 4 cut(s) 277, 309, 324, 841
BstF5I GGATG 5 cut(s) 141, 447, 757, 1047, 1186
BstFNI CGCG 9 cut(s) 169, 190, 215, 217, 368, 381, 383, 385, 387
BstH2I RGCGCY 3 cut(s) 339, 447, 468
BstKTI GATC 3 cut(s) 420, 796, 1213
BstMBI GATC 3 cut(s) 417, 793, 1210
BstMCI CGRYCG 2 cut(s) 841, 862
BstNI CCWGG 2 cut(s) 560, 1206
BstSCI CCNGG 4 cut(s) 422, 558, 631, 1204
BstSLI GKGCMC 3 cut(s) 528, 648, 878
BstUI CGCG 9 cut(s) 169, 190, 215, 217, 368, 381, 383, 385, 387
BstV1I GCAGC 3 cut(s) 29, 32, 35
BstV2I GAAGAC 2 cut(s) 532, 1298
BstXI CCANNNNNNTGG 1 cut(s) 535
BstZI CGGCCG 2 cut(s) 838, 859
BsuI GTATCC 2 cut(s) 886, 913
BtgI CCRYGG 4 cut(s) 277, 309, 324, 841
BtrI CACGTC 2 cut(s) 247, 271
BtsCI GGATG 5 cut(s) 141, 447, 757, 1047, 1186
BtsIMutI CAGTG 1 cut(s) 933
BveI ACCTGC 1 cut(s) 1295
Cac8I GCNNGC 5 cut(s) 381, 383, 385, 507, 524
Cfr10I RCCGGY 5 cut(s) 836, 857, 941, 983, 1148
Cfr13I GGNCC 4 cut(s) 313, 430, 473, 556
CseI GACGC 1 cut(s) 371
CsiI ACCWGGT 1 cut(s) 558
Csp6I GTAC 1 cut(s) 349
CspAI ACCGGT 2 cut(s) 941, 1148
CviAII CATG 5 cut(s) 310, 325, 415, 532, 1129
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 1007, 1161
DinI GGCGCC 2 cut(s) 445, 466
DpnI GATC 3 cut(s) 419, 795, 1212
DpnII GATC 3 cut(s) 417, 793, 1210
EaeI YGGCCR 8 cut(s) 265, 507, 690, 810, 838, 852, 859, 981
EagI CGGCCG 2 cut(s) 838, 859
Eam1104I CTCTTC 2 cut(s) 124, 1071
EarI CTCTTC 2 cut(s) 124, 1071
Ecl136II GAGCTC 1 cut(s) 586
EclXI CGGCCG 2 cut(s) 838, 859
Eco130I CCWWGG 2 cut(s) 309, 324
Eco24I GRGCYC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 556
Eco52I CGGCCG 2 cut(s) 838, 859
Eco53kI GAGCTC 1 cut(s) 586
Eco88I CYCGRG 2 cut(s) 581, 1105
EcoICRI GAGCTC 1 cut(s) 586
EcoRII CCWGG 2 cut(s) 558, 1204
EcoT14I CCWWGG 2 cut(s) 309, 324
EcoT38I GRGCYC 1 cut(s) 588
EgeI GGCGCC 2 cut(s) 445, 466
EheI GGCGCC 2 cut(s) 445, 466
ErhI CCWWGG 2 cut(s) 309, 324
FaeI CATG 5 cut(s) 313, 328, 418, 535, 1132
FaqI GGGAC 1 cut(s) 859
FatI CATG 5 cut(s) 309, 324, 414, 531, 1128
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 1 cut(s) 417
FblI GTMKAC 3 cut(s) 273, 564, 900
Fnu4HI GCNGC 9 cut(s) 18, 21, 24, 193, 213, 300, 366, 429, 482
FokI GGATG 5 cut(s) 128, 434, 764, 1054, 1193
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 9 cut(s) 18, 21, 24, 193, 213, 300, 366, 429, 482
FspBI CTAG 1 cut(s) 677
GluI GCNGC 9 cut(s) 18, 21, 24, 193, 213, 300, 366, 429, 482
HaeII RGCGCY 3 cut(s) 339, 447, 468
HgaI GACGC 1 cut(s) 371
Hin1I GRCGYC 3 cut(s) 363, 444, 465
Hin1II CATG 5 cut(s) 313, 328, 418, 535, 1132
HincII GTYRAC 4 cut(s) 250, 274, 565, 901
HindII GTYRAC 4 cut(s) 250, 274, 565, 901
HinfI GANTC 5 cut(s) 390, 964, 1155, 1187, 1256
Hpy166II GTNNAC 4 cut(s) 250, 274, 565, 901
Hpy188I TCNGA 5 cut(s) 960, 1020, 1035, 1164, 1280
Hpy188III TCNNGA 6 cut(s) 343, 581, 868, 968, 1219, 1260
Hpy8I GTNNAC 4 cut(s) 250, 274, 565, 901
Hpy99I CGWCG 7 cut(s) 275, 356, 365, 473, 569, 572, 593
HpyAV CCTTC 6 cut(s) 72, 133, 208, 910, 1066, 1277
HpyCH4III ACNGT 6 cut(s) 205, 850, 898, 937, 1122, 1297
HpyCH4IV ACGT 2 cut(s) 246, 270
HpyF3I CTNAG 2 cut(s) 1007, 1161
HpySE526I ACGT 2 cut(s) 246, 270
Hsp92I GRCGYC 3 cut(s) 363, 444, 465
Hsp92II CATG 5 cut(s) 313, 328, 418, 535, 1132
KasI GGCGCC 2 cut(s) 443, 464
Kpn2I TCCGGA 1 cut(s) 1259
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 3 cut(s) 417, 793, 1210
LmnI GCTCC 6 cut(s) 200, 376, 464, 574, 1301, 1316
Lsp1109I GCAGC 3 cut(s) 29, 32, 35
LweI GCATC 1 cut(s) 742
MabI ACCWGGT 1 cut(s) 558
MaeI CTAG 1 cut(s) 677
MaeII ACGT 2 cut(s) 246, 270
MaeIII GTNAC 5 cut(s) 713, 937, 986, 1144, 1156
MalI GATC 3 cut(s) 419, 795, 1212
MauBI CGCGCGCG 2 cut(s) 381, 383
MbiI CCGCTC 1 cut(s) 195
MboI GATC 3 cut(s) 417, 793, 1210
MhlI GDGCHC 5 cut(s) 498, 528, 588, 648, 878
MlsI TGGCCA 3 cut(s) 509, 812, 854
MluCI AATT 3 cut(s) 84, 593, 1232
MluNI TGGCCA 3 cut(s) 509, 812, 854
Mly113I GGCGCC 2 cut(s) 444, 465
MlyI GAGTC 3 cut(s) 1164, 1196, 1265
MmeI TCCRAC 1 cut(s) 1279
Mox20I TGGCCA 3 cut(s) 509, 812, 854
MroI TCCGGA 1 cut(s) 1259
MscI TGGCCA 3 cut(s) 509, 812, 854
MseI TTAA 2 cut(s) 705, 882
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 3 cut(s) 509, 812, 854
MspR9I CCNGG 4 cut(s) 424, 560, 633, 1206
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 2 cut(s) 560, 1206
MvnI CGCG 9 cut(s) 169, 190, 215, 217, 368, 381, 383, 385, 387
NarI GGCGCC 2 cut(s) 444, 465
NciI CCSGG 2 cut(s) 424, 633
NcoI CCATGG 2 cut(s) 309, 324
NdeI CATATG 1 cut(s) 622
NdeII GATC 3 cut(s) 417, 793, 1210
NlaIII CATG 5 cut(s) 313, 328, 418, 535, 1132
NlaIV GGNNCC 5 cut(s) 259, 445, 466, 877, 1318
NmuCI GTSAC 4 cut(s) 713, 986, 1144, 1156
PaeR7I CTCGAG 1 cut(s) 581
PaqCI CACCTGC 1 cut(s) 1295
PauI GCGCGC 3 cut(s) 379, 381, 383
PcsI WCGNNNNNNNCGW 3 cut(s) 270, 357, 588
PctI GAATGC 1 cut(s) 1090
PfeI GAWTC 2 cut(s) 390, 964
PflFI GACNNNGTC 1 cut(s) 560
PinAI ACCGGT 2 cut(s) 941, 1148
PkrI GCNGC 9 cut(s) 19, 22, 25, 194, 214, 301, 367, 430, 483
PleI GAGTC 3 cut(s) 1163, 1195, 1264
PluTI GGCGCC 2 cut(s) 447, 468
PpsI GAGTC 3 cut(s) 1163, 1195, 1264
Psp124BI GAGCTC 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 558, 1204
PspGI CCWGG 2 cut(s) 558, 1204
PspN4I GGNNCC 5 cut(s) 259, 445, 466, 877, 1318
PspPI GGNCC 4 cut(s) 313, 430, 473, 556
PsyI GACNNNGTC 1 cut(s) 560
PteI GCGCGC 3 cut(s) 379, 381, 383
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 588
SalI GTCGAC 3 cut(s) 272, 563, 899
SaqAI TTAA 2 cut(s) 705, 882
SatI GCNGC 9 cut(s) 18, 21, 24, 193, 213, 300, 366, 429, 482
Sau3AI GATC 3 cut(s) 417, 793, 1210
Sau96I GGNCC 4 cut(s) 313, 430, 473, 556
SchI GAGTC 3 cut(s) 1164, 1196, 1265
ScrFI CCNGG 4 cut(s) 424, 560, 633, 1206
SduI GDGCHC 5 cut(s) 498, 528, 588, 648, 878
SexAI ACCWGGT 1 cut(s) 558
SfaNI GCATC 1 cut(s) 742
SfoI GGCGCC 2 cut(s) 445, 466
Sfr274I CTCGAG 1 cut(s) 581
SinI GGWCC 1 cut(s) 556
SlaI CTCGAG 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 581, 1325
SmoI CTYRAG 2 cut(s) 581, 1325
Sse9I AATT 3 cut(s) 84, 593, 1232
SspDI GGCGCC 2 cut(s) 443, 464
SspMI CTAG 1 cut(s) 677
SstI GAGCTC 1 cut(s) 588
StyD4I CCNGG 4 cut(s) 422, 558, 631, 1204
StyI CCWWGG 2 cut(s) 309, 324
TaaI ACNGT 6 cut(s) 205, 850, 898, 937, 1122, 1297
TaiI ACGT 2 cut(s) 249, 273
TasI AATT 3 cut(s) 84, 593, 1232
TauI GCSGC 6 cut(s) 195, 215, 302, 368, 431, 484
TfiI GAWTC 2 cut(s) 390, 964
Tru1I TTAA 2 cut(s) 705, 882
Tru9I TTAA 2 cut(s) 705, 882
TscAI CASTG 1 cut(s) 940
TseFI GTSAC 4 cut(s) 713, 986, 1144, 1156
TseI GCWGC 3 cut(s) 17, 20, 23
Tsp45I GTSAC 4 cut(s) 713, 986, 1144, 1156
TspDTI ATGAA 2 cut(s) 609, 1184
TspRI CASTG 1 cut(s) 940
Tth111I GACNNNGTC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 581
XmiI GTMKAC 3 cut(s) 273, 564, 900
XspI CTAG 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.