Rh7AG125900

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
9875277 .. 9877984
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG125900.1

Sequence Viewer

Length: 1437 bp
ATGGCAATCTCAACAGCAGCAGCAGCTTCCTCAAAGCTCACATACACTTATGCCTCCTCACCTTCTTCAACCCCTTGTTTCTCAATTAGACCCACTTCCAAGCTCACCCACCTCTCCTCTTCCTTCCTAAACCCCTCCACCATCCTCCACCTCACTCCCTCCTCCACCACGCGCCACCACCCCACGCGCCGCTCCTTCACCGTCAAGGCCGCGCGTGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACGGCCGCCCTCACCATGGCCCTCGCCTCCATGGGCAACAGCGCCGTCAAGAAGTACGACGAAATCGACGCCGCGCCGGAGGAGCGCGCGCGCGGAATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAGCCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGGGCCGCCCAGATGGACGGCGCCATCCTCGTCTGCTCCGGCGCCGACGGCCCAATGCCGCAGACCAAAGAGCACATCTTGCTCGCCAAGCAAGTCGGCGTGCCCAACATGGTGGTCTTCCTCAACAAACAGGACCAGGTCGACGACGAGGAGCTTCTCGAGCTCGTCGAATTGGAGGTGCGTGAGTTGCTTTCTTCATATGAGTTTCCCGGTGATGATGTGCCCATCATTTCCGGTTCGGCTTTGTTAGCACTAGAGGCTTTGATGGCTGACCCTGCTATTAAGCGTGGTGACAATAAATGGGTAGATAAGATTTATGAGCTTATGGATGCTGTCGATAGCTATATACCTATTCCGCAACGGCAGACTGATCTGCCGTTTTTGATGGCCATTGAAGATGTGTTTTCCATCACTGGCCGTGGGACTGTGGCCACCGGCCGTGTCGAGAGGGGCACCATTAAGACTGGGGATACAGTCGACATTGTTGGGTTGAAGGATACGAGAAGCACCACTGTTACTGGTGTGGAGATGTTTCAGAAGATTCTCGATGAGGCTTTGGCCGGTGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGATTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCGGGGACTATTACCCCGCATACTAAGTTTGAGGCCATTGTCTATGTGTTGAAGAAGGAAGAGGGTGGTAGGCATTCCCCCTTTTTCTCGGGTTATAGGCCACAGTTTTACATGAGGACTACTGATGTCACCGGTAGAGTGACTCAGATTATGAATGATAAGGATGAGGAGTCCAAGATGGTTATGCCTGGTGATCGTGTCAAGATTATTGTCGAATTGATTGTGCCTGTGGCTTGTGAGTCCGGAATGAGGTTTGCTATCAGAGAAGGAGGGAAGACTGTTGGAGCAGGTGTTATTGGAGCCATACTTGAGTGA

Protein Analysis

478

Amino Acids

52.01

Weight (kDa)

6.15

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 79 - 280 1.8e-62 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 304 - 373 1.2e-20 Elongation factor Tu domain 2
GTP_EFTU_D3 PF03143 377 - 476 5.2e-39 Elongation factor Tu C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1400
Acc36I ACCTGC 1 cut(s) 1400
AccB1I GGYRCC 4 cut(s) 254, 509, 530, 941
AccBSI CCGCTC 1 cut(s) 192
AccI GTMKAC 4 cut(s) 270, 447, 630, 966
AccII CGCG 9 cut(s) 172, 187, 212, 214, 365, 378, 380, 382, 384
AccIII TCCGGA 1 cut(s) 1364
AcoI YGGCCR 8 cut(s) 262, 294, 457, 876, 904, 918, 925, 1047
AcyI GRCGYC 3 cut(s) 360, 510, 531
AfaI GTAC 2 cut(s) 347, 416
AfiI CCNNNNNNNGG 2 cut(s) 307, 1371
AgeI ACCGGT 1 cut(s) 1253
AgsI TTSAA 4 cut(s) 69, 884, 982, 1174
AjiI CACGTC 3 cut(s) 244, 268, 445
AjnI CCWGG 2 cut(s) 624, 1309
AluBI AGCT 7 cut(s) 26, 37, 103, 643, 652, 811, 831
AluI AGCT 7 cut(s) 26, 37, 103, 643, 652, 811, 831
Alw21I GWGCWC 2 cut(s) 564, 654
Alw26I GTCTC 1 cut(s) 413
Ama87I CYCGRG 2 cut(s) 647, 1210
Aor13HI TCCGGA 1 cut(s) 1364
ApeKI GCWGC 3 cut(s) 17, 20, 23
AsiGI ACCGGT 1 cut(s) 1253
AspS9I GGNCC 4 cut(s) 310, 492, 539, 622
AsuC2I CCSGG 4 cut(s) 456, 490, 699, 1125
AvaI CYCGRG 2 cut(s) 647, 1210
AvaII GGWCC 1 cut(s) 622
BaeGI GKGCMC 3 cut(s) 594, 714, 944
BalI TGGCCA 2 cut(s) 878, 920
BanI GGYRCC 4 cut(s) 254, 509, 530, 941
BanII GRGCYC 1 cut(s) 654
BbsI GAAGAC 2 cut(s) 598, 1403
Bbv12I GWGCWC 2 cut(s) 564, 654
BbvI GCAGC 3 cut(s) 29, 32, 35
BceAI ACGGC 9 cut(s) 292, 309, 320, 523, 553, 850, 866, 891, 912
BciT130I CCWGG 2 cut(s) 626, 1311
BciVI GTATCC 2 cut(s) 952, 979
BclI TGATCA 1 cut(s) 483
BcnI CCSGG 4 cut(s) 456, 490, 699, 1125
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 743
BfoI RGCGCY 3 cut(s) 336, 513, 534
BfuAI ACCTGC 1 cut(s) 1400
BfuI GTATCC 2 cut(s) 952, 979
BlpI GCTNAGC 1 cut(s) 1119
Bme1390I CCNGG 6 cut(s) 456, 490, 626, 699, 1125, 1311
Bme18I GGWCC 1 cut(s) 622
BmeT110I CYCGRG 2 cut(s) 647, 1210
BmgBI CACGTC 3 cut(s) 244, 268, 445
BmgT120I GGNCC 4 cut(s) 310, 492, 539, 622
BmiI GGNNCC 6 cut(s) 256, 493, 511, 532, 943, 1423
BmrFI CCNGG 6 cut(s) 456, 490, 626, 699, 1125, 1311
BmrI ACTGGG 1 cut(s) 963
BmsI GCATC 1 cut(s) 808
BmuI ACTGGG 1 cut(s) 963
BpiI GAAGAC 2 cut(s) 598, 1403
Bpu10I CCTNAGC 1 cut(s) 1073
Bpu1102I GCTNAGC 1 cut(s) 1119
BpuMI CCSGG 4 cut(s) 456, 490, 699, 1125
BsaHI GRCGYC 3 cut(s) 360, 510, 531
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 7 cut(s) 274, 306, 321, 454, 489, 907, 1124
BsaWI WCCGGW 3 cut(s) 722, 1253, 1364
BsaXI ACNNNNNCTCC 2 cut(s) 1398, 1428
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 1371
Bse118I RCCGGY 3 cut(s) 923, 1049, 1253
Bse1I ACTGG 3 cut(s) 907, 958, 1012
BseAI TCCGGA 1 cut(s) 1364
BseBI CCWGG 2 cut(s) 626, 1311
BseDI CCNNGG 7 cut(s) 274, 306, 321, 454, 489, 907, 1124
BseGI GGATG 5 cut(s) 141, 513, 823, 1113, 1291
BseLI CCNNNNNNNGG 2 cut(s) 307, 1371
BseMII CTCAG 1 cut(s) 1280
BseNI ACTGG 3 cut(s) 907, 958, 1012
BsePI GCGCGC 3 cut(s) 376, 378, 380
BseRI GAGGAG 6 cut(s) 46, 106, 151, 386, 653, 1304
BseSI GKGCMC 3 cut(s) 594, 714, 944
BseX3I CGGCCG 2 cut(s) 294, 925
BseXI GCAGC 3 cut(s) 29, 32, 35
Bsh1236I CGCG 9 cut(s) 172, 187, 212, 214, 365, 378, 380, 382, 384
Bsh1285I CGRYCG 2 cut(s) 297, 928
BshNI GGYRCC 4 cut(s) 254, 509, 530, 941
BshTI ACCGGT 1 cut(s) 1253
BsiEI CGRYCG 2 cut(s) 297, 928
BsiHKAI GWGCWC 2 cut(s) 564, 654
BsiHKCI CYCGRG 2 cut(s) 647, 1210
BslFI GGGAC 2 cut(s) 925, 1141
BslI CCNNNNNNNGG 2 cut(s) 307, 1371
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 925, 1141
BsmI GAATGC 1 cut(s) 1195
Bso31I GGTCTC 1 cut(s) 413
BsoBI CYCGRG 2 cut(s) 647, 1210
Bsp1286I GDGCHC 5 cut(s) 564, 594, 654, 714, 944
Bsp13I TCCGGA 1 cut(s) 1364
Bsp143I GATC 3 cut(s) 483, 859, 1315
Bsp1720I GCTNAGC 1 cut(s) 1119
Bsp19I CCATGG 2 cut(s) 306, 321
BspCNI CTCAG 1 cut(s) 1279
BspEI TCCGGA 1 cut(s) 1364
BspFNI CGCG 9 cut(s) 172, 187, 212, 214, 365, 378, 380, 382, 384
BspLI GGNNCC 6 cut(s) 256, 493, 511, 532, 943, 1423
BspMI ACCTGC 1 cut(s) 1400
BspT107I GGYRCC 4 cut(s) 254, 509, 530, 941
BspTNI GGTCTC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 192
BsrFI RCCGGY 3 cut(s) 923, 1049, 1253
BsrI ACTGG 3 cut(s) 907, 958, 1012
BssAI RCCGGY 3 cut(s) 923, 1049, 1253
BssECI CCNNGG 7 cut(s) 274, 306, 321, 454, 489, 907, 1124
BssHII GCGCGC 3 cut(s) 376, 378, 380
BssMI GATC 3 cut(s) 483, 859, 1315
BssNI GRCGYC 3 cut(s) 360, 510, 531
BssT1I CCWWGG 2 cut(s) 306, 321
Bst2UI CCWGG 2 cut(s) 626, 1311
Bst4CI ACNGT 7 cut(s) 202, 409, 916, 964, 1003, 1227, 1402
Bst6I CTCTTC 2 cut(s) 124, 1176
BstACI GRCGYC 3 cut(s) 360, 510, 531
BstAPI GCANNNNNTGC 1 cut(s) 568
BstC8I GCNNGC 5 cut(s) 378, 380, 382, 573, 590
BstDEI CTNAG 4 cut(s) 1073, 1119, 1146, 1266
BstDSI CCRYGG 4 cut(s) 274, 306, 321, 907
BstF5I GGATG 5 cut(s) 141, 513, 823, 1113, 1291
BstFNI CGCG 9 cut(s) 172, 187, 212, 214, 365, 378, 380, 382, 384
BstH2I RGCGCY 3 cut(s) 336, 513, 534
BstKTI GATC 3 cut(s) 486, 862, 1318
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 3 cut(s) 483, 859, 1315
BstMCI CGRYCG 2 cut(s) 297, 928
BstNI CCWGG 2 cut(s) 626, 1311
BstSCI CCNGG 6 cut(s) 454, 488, 624, 697, 1123, 1309
BstSLI GKGCMC 3 cut(s) 594, 714, 944
BstUI CGCG 9 cut(s) 172, 187, 212, 214, 365, 378, 380, 382, 384
BstV1I GCAGC 3 cut(s) 29, 32, 35
BstV2I GAAGAC 2 cut(s) 598, 1403
BstXI CCANNNNNNTGG 1 cut(s) 601
BstZI CGGCCG 2 cut(s) 294, 925
BsuI GTATCC 2 cut(s) 952, 979
BtgI CCRYGG 4 cut(s) 274, 306, 321, 907
BtrI CACGTC 3 cut(s) 244, 268, 445
BtsCI GGATG 5 cut(s) 141, 513, 823, 1113, 1291
BtsIMutI CAGTG 2 cut(s) 900, 999
BveI ACCTGC 1 cut(s) 1400
Cac8I GCNNGC 5 cut(s) 378, 380, 382, 573, 590
Cfr10I RCCGGY 3 cut(s) 923, 1049, 1253
Cfr13I GGNCC 4 cut(s) 310, 492, 539, 622
CseI GACGC 1 cut(s) 368
CsiI ACCWGGT 1 cut(s) 624
Csp6I GTAC 2 cut(s) 346, 415
CspAI ACCGGT 1 cut(s) 1253
CviAII CATG 5 cut(s) 307, 322, 481, 598, 1234
CviQI GTAC 2 cut(s) 346, 415
DdeI CTNAG 4 cut(s) 1073, 1119, 1146, 1266
DinI GGCGCC 2 cut(s) 511, 532
DpnI GATC 3 cut(s) 485, 861, 1317
DpnII GATC 3 cut(s) 483, 859, 1315
EaeI YGGCCR 8 cut(s) 262, 294, 457, 876, 904, 918, 925, 1047
EagI CGGCCG 2 cut(s) 294, 925
Eam1104I CTCTTC 2 cut(s) 124, 1176
EarI CTCTTC 2 cut(s) 124, 1176
Ecl136II GAGCTC 1 cut(s) 652
EclXI CGGCCG 2 cut(s) 294, 925
Eco130I CCWWGG 2 cut(s) 306, 321
Eco24I GRGCYC 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 622
Eco52I CGGCCG 2 cut(s) 294, 925
Eco53kI GAGCTC 1 cut(s) 652
Eco88I CYCGRG 2 cut(s) 647, 1210
EcoICRI GAGCTC 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 624, 1309
EcoT14I CCWWGG 2 cut(s) 306, 321
EcoT38I GRGCYC 1 cut(s) 654
EgeI GGCGCC 2 cut(s) 511, 532
EheI GGCGCC 2 cut(s) 511, 532
ErhI CCWWGG 2 cut(s) 306, 321
FaeI CATG 5 cut(s) 310, 325, 484, 601, 1237
FaqI GGGAC 2 cut(s) 925, 1141
FatI CATG 5 cut(s) 306, 321, 480, 597, 1233
FauI CCCGC 1 cut(s) 1146
FauNDI CATATG 1 cut(s) 688
FbaI TGATCA 1 cut(s) 483
FblI GTMKAC 4 cut(s) 270, 447, 630, 966
FokI GGATG 5 cut(s) 128, 500, 830, 1120, 1298
FriOI GRGCYC 1 cut(s) 654
FspBI CTAG 1 cut(s) 743
HaeII RGCGCY 3 cut(s) 336, 513, 534
HgaI GACGC 1 cut(s) 368
Hin1I GRCGYC 3 cut(s) 360, 510, 531
Hin1II CATG 5 cut(s) 310, 325, 484, 601, 1237
HincII GTYRAC 5 cut(s) 247, 271, 448, 631, 967
HindII GTYRAC 5 cut(s) 247, 271, 448, 631, 967
HinfI GANTC 5 cut(s) 387, 1030, 1264, 1292, 1361
Hpy166II GTNNAC 5 cut(s) 247, 271, 448, 631, 967
Hpy188I TCNGA 5 cut(s) 1026, 1086, 1101, 1269, 1385
Hpy188III TCNNGA 7 cut(s) 340, 475, 647, 934, 1034, 1324, 1365
Hpy8I GTNNAC 5 cut(s) 247, 271, 448, 631, 967
Hpy99I CGWCG 9 cut(s) 272, 353, 362, 413, 449, 539, 635, 638, 659
HpyAV CCTTC 6 cut(s) 72, 133, 205, 976, 1171, 1382
HpyCH4III ACNGT 7 cut(s) 202, 409, 916, 964, 1003, 1227, 1402
HpyCH4IV ACGT 4 cut(s) 243, 267, 444, 471
HpyF3I CTNAG 4 cut(s) 1073, 1119, 1146, 1266
HpySE526I ACGT 4 cut(s) 243, 267, 444, 471
Hsp92I GRCGYC 3 cut(s) 360, 510, 531
Hsp92II CATG 5 cut(s) 310, 325, 484, 601, 1237
KasI GGCGCC 2 cut(s) 509, 530
Kpn2I TCCGGA 1 cut(s) 1364
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 3 cut(s) 483, 859, 1315
LmnI GCTCC 6 cut(s) 197, 373, 530, 640, 1406, 1421
Lsp1109I GCAGC 3 cut(s) 29, 32, 35
LweI GCATC 1 cut(s) 808
MabI ACCWGGT 1 cut(s) 624
MaeI CTAG 1 cut(s) 743
MaeII ACGT 4 cut(s) 243, 267, 444, 471
MaeIII GTNAC 5 cut(s) 779, 1003, 1052, 1249, 1261
MalI GATC 3 cut(s) 485, 861, 1317
MauBI CGCGCGCG 2 cut(s) 378, 380
MbiI CCGCTC 1 cut(s) 192
MboI GATC 3 cut(s) 483, 859, 1315
MhlI GDGCHC 5 cut(s) 564, 594, 654, 714, 944
MlsI TGGCCA 2 cut(s) 878, 920
MluCI AATT 3 cut(s) 84, 659, 1337
MluNI TGGCCA 2 cut(s) 878, 920
Mly113I GGCGCC 2 cut(s) 510, 531
MlyI GAGTC 3 cut(s) 1258, 1301, 1370
MmeI TCCRAC 1 cut(s) 1384
Mox20I TGGCCA 2 cut(s) 878, 920
MroI TCCGGA 1 cut(s) 1364
MscI TGGCCA 2 cut(s) 878, 920
MseI TTAA 2 cut(s) 771, 948
Msp20I TGGCCA 2 cut(s) 878, 920
MspR9I CCNGG 6 cut(s) 456, 490, 626, 699, 1125, 1311
Mva1269I GAATGC 1 cut(s) 1195
MvaI CCWGG 2 cut(s) 626, 1311
MvnI CGCG 9 cut(s) 172, 187, 212, 214, 365, 378, 380, 382, 384
NarI GGCGCC 2 cut(s) 510, 531
NciI CCSGG 4 cut(s) 456, 490, 699, 1125
NcoI CCATGG 2 cut(s) 306, 321
NdeI CATATG 1 cut(s) 688
NdeII GATC 3 cut(s) 483, 859, 1315
NlaIII CATG 5 cut(s) 310, 325, 484, 601, 1237
NlaIV GGNNCC 6 cut(s) 256, 493, 511, 532, 943, 1423
NmuCI GTSAC 4 cut(s) 779, 1052, 1249, 1261
PaeR7I CTCGAG 1 cut(s) 647
PaqCI CACCTGC 1 cut(s) 1400
PauI GCGCGC 3 cut(s) 376, 378, 380
PcsI WCGNNNNNNNCGW 5 cut(s) 267, 354, 444, 468, 654
PctI GAATGC 1 cut(s) 1195
PfeI GAWTC 2 cut(s) 387, 1030
PflFI GACNNNGTC 2 cut(s) 470, 626
PinAI ACCGGT 1 cut(s) 1253
PleI GAGTC 3 cut(s) 1258, 1300, 1369
PluTI GGCGCC 2 cut(s) 513, 534
PpsI GAGTC 3 cut(s) 1258, 1300, 1369
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 2 cut(s) 624, 1309
PspGI CCWGG 2 cut(s) 624, 1309
PspN4I GGNNCC 6 cut(s) 256, 493, 511, 532, 943, 1423
PspPI GGNCC 4 cut(s) 310, 492, 539, 622
PsyI GACNNNGTC 2 cut(s) 470, 626
PteI GCGCGC 3 cut(s) 376, 378, 380
RsaI GTAC 2 cut(s) 347, 416
RsaNI GTAC 2 cut(s) 346, 415
SacI GAGCTC 1 cut(s) 654
SalI GTCGAC 4 cut(s) 269, 446, 629, 965
SaqAI TTAA 2 cut(s) 771, 948
Sau3AI GATC 3 cut(s) 483, 859, 1315
Sau96I GGNCC 4 cut(s) 310, 492, 539, 622
SchI GAGTC 3 cut(s) 1258, 1301, 1370
ScrFI CCNGG 6 cut(s) 456, 490, 626, 699, 1125, 1311
SduI GDGCHC 5 cut(s) 564, 594, 654, 714, 944
SexAI ACCWGGT 1 cut(s) 624
SfaNI GCATC 1 cut(s) 808
SfoI GGCGCC 2 cut(s) 511, 532
Sfr274I CTCGAG 1 cut(s) 647
SinI GGWCC 1 cut(s) 622
SlaI CTCGAG 1 cut(s) 647
SmlI CTYRAG 2 cut(s) 647, 1430
SmoI CTYRAG 2 cut(s) 647, 1430
Sse9I AATT 3 cut(s) 84, 659, 1337
SspDI GGCGCC 2 cut(s) 509, 530
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 6 cut(s) 454, 488, 624, 697, 1123, 1309
StyI CCWWGG 2 cut(s) 306, 321
TaaI ACNGT 7 cut(s) 202, 409, 916, 964, 1003, 1227, 1402
TaiI ACGT 4 cut(s) 246, 270, 447, 474
TaqII GACCGA 1 cut(s) 437
TasI AATT 3 cut(s) 84, 659, 1337
TauI GCSGC 7 cut(s) 192, 212, 299, 365, 432, 497, 550
TfiI GAWTC 2 cut(s) 387, 1030
Tru1I TTAA 2 cut(s) 771, 948
Tru9I TTAA 2 cut(s) 771, 948
TscAI CASTG 2 cut(s) 907, 1006
TseFI GTSAC 4 cut(s) 779, 1052, 1249, 1261
TseI GCWGC 3 cut(s) 17, 20, 23
Tsp45I GTSAC 4 cut(s) 779, 1052, 1249, 1261
TspDTI ATGAA 2 cut(s) 675, 1289
TspRI CASTG 2 cut(s) 907, 1006
Tth111I GACNNNGTC 2 cut(s) 470, 626
VpaK11BI GGWCC 1 cut(s) 622
XhoI CTCGAG 1 cut(s) 647
XmiI GTMKAC 4 cut(s) 270, 447, 630, 966
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.