Rh2AG648100

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
86810434 .. 86811663
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG648100.1

Sequence Viewer

Length: 1230 bp
ATGGCTCGTGGCAAGTTCGAGCGGAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTGGCCTCCATGGGGAACAGCGCCCCCAAGAAGTACGACGAGATCGACGCCGCGCCGGAGGAGCGCGCGCGCGGCATCACTATCAACACCGCCACCGTCGAGTACGAGACCGCCACGCGCCACTATGCGCACGTTGACTGCCCCGGTCACGCCGACTACGTCAAGAACATGATCACCGGCGCCGCGCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCGATGCCGCAGACGAAGGAGCACGTCCTGCTGGCCAAGCAGGTCGGCGTCCCCAATGTGGTGGTGTTCTTGAACAAACAGGACCAGGTGGACGACGCCGAGCTGCTTGAGCTGGTGGAATTGGAGGTCAGGGACTTGTTATCGTCGTATGAATTCCCCGGCGACGATGTTCCGGTGGTTTCGGGTTCGGCATTGCTGGCATTGGAGGCCTTAATGGCGAACCCGAAAATAAAGAGAGGGGAGAATGAATGGGTGGATAAAATTTATGACTTGATGGATTGTGTGGATGACTATATTCCAATTCCGCAGAGGCAGACTGATCTGCCGTTTCTGTTGGCCGTTGAGGATGTGTTTTCGATCACAGGACGTGGCACGGTGGCCACGGGGCGGGTGGAGAGAGGTAAAGTGAAGGTTGGGGACCATGTGGATGTAGTGGGATTGAGAGAGACTAGGAATACAACTGTCACCGGAGTTGAAATGTTTCAGAAAACACTTGATGAGGCACTTGCTGGTGACAATGTAGGGCTTTTGCTGAGGGGTATTCAGAAGATGGATATTCAGAGAGGGATGGTGGTTTCTAAGCCGGGTAGCATCACACCTCACACTAAGTTTGAGGCGATTGTGTATGTGTTGAAGAAGGAAGAGGGTGGGAGGCATTCGCCGTTCTTTGCAGGGTATAGGCCTCAGTTTTACATGAGGACTACTGATGTGACCGGTAAGGTGACGCAGATTATGAATGACAATGATGAGGTGTCGAAGATGGTTATGCCCGGAGACAGAGTGAAGATGGTGGTGGAGCTTATAATGCCGGTGGCTTGTGAGCAAGGGATGAGATTTGCGATTAGGGAAGGTGGCAAGACTGTTGGGGCTGGTGTCATTCAGTCTATTATTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

44.72

Weight (kDa)

5.56

Isoelectric Point (pI)

26.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 10 - 211 7.8e-62 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 235 - 303 6.8e-19 Elongation factor Tu domain 2
GTP_EFTU_D3 PF03143 308 - 407 3.2e-40 Elongation factor Tu C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1136
Acc16I TGCGCA 1 cut(s) 234
Acc36I ACCTGC 1 cut(s) 364
AccB1I GGYRCC 4 cut(s) 47, 284, 302, 323
AccBSI CCGCTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 63
AccII CGCG 7 cut(s) 158, 171, 173, 175, 177, 223, 290
AcoI YGGCCR 4 cut(s) 55, 366, 669, 711
AcsI RAATTY 2 cut(s) 485, 594
AcyI GRCGYC 6 cut(s) 153, 285, 303, 324, 381, 429
AfaI GTAC 2 cut(s) 140, 209
AfiI CCNNNNNNNGG 4 cut(s) 100, 117, 391, 720
AgeI ACCGGT 1 cut(s) 1046
AgsI TTSAA 3 cut(s) 406, 809, 967
AjiI CACGTC 4 cut(s) 37, 61, 358, 701
AjnI CCWGG 2 cut(s) 105, 417
AluBI AGCT 3 cut(s) 436, 445, 1132
AluI AGCT 3 cut(s) 436, 445, 1132
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 4 cut(s) 206, 322, 773, 1101
AoxI GGCC 9 cut(s) 55, 102, 108, 331, 366, 540, 669, 711, 1013
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 2 cut(s) 485, 594
AsiGI ACCGGT 1 cut(s) 1046
Asp700I GAANNNNTTC 1 cut(s) 813
AspS9I GGNCC 4 cut(s) 103, 332, 415, 751
AsuC2I CCSGG 4 cut(s) 249, 492, 918, 1104
AsuHPI GGTGA 6 cut(s) 76, 88, 271, 790, 857, 1066
AvaII GGWCC 2 cut(s) 415, 751
BalI TGGCCA 2 cut(s) 368, 713
BanI GGYRCC 4 cut(s) 47, 284, 302, 323
BauI CACGAG 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 866
BbvI GCAGC 1 cut(s) 423
BccI CCATC 8 cut(s) 59, 289, 314, 601, 877, 895, 1087, 1114
BceAI ACGGC 6 cut(s) 85, 316, 346, 643, 656, 979
BciT130I CCWGG 2 cut(s) 107, 419
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 4 cut(s) 249, 492, 918, 1104
BcoDI GTCTC 4 cut(s) 206, 322, 773, 1101
BfaI CTAG 1 cut(s) 783
BfoI RGCGCY 4 cut(s) 129, 288, 306, 327
BfuAI ACCTGC 1 cut(s) 364
BglI GCCNNNNNGGC 1 cut(s) 548
BisI GCNGC 6 cut(s) 90, 156, 178, 288, 341, 437
BlsI GCNGC 6 cut(s) 91, 157, 179, 289, 342, 438
Bme1390I CCNGG 6 cut(s) 107, 249, 419, 492, 918, 1104
Bme18I GGWCC 2 cut(s) 415, 751
BmgBI CACGTC 4 cut(s) 37, 61, 358, 701
BmgT120I GGNCC 4 cut(s) 103, 332, 415, 751
BmiI GGNNCC 5 cut(s) 49, 286, 304, 325, 752
BmrFI CCNGG 6 cut(s) 107, 249, 419, 492, 918, 1104
BmsI GCATC 3 cut(s) 189, 327, 933
Bpu10I CCTNAGC 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 4 cut(s) 249, 492, 918, 1104
BsaHI GRCGYC 6 cut(s) 153, 285, 303, 324, 381, 429
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 7 cut(s) 67, 99, 105, 114, 247, 490, 714
BsaWI WCCGGW 3 cut(s) 505, 800, 1046
BsaXI ACNNNNNCTCC 2 cut(s) 1098, 1128
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 117, 391, 720
Bse118I RCCGGY 3 cut(s) 281, 1046, 1141
Bse3DI GCAATG 1 cut(s) 524
BseBI CCWGG 2 cut(s) 107, 419
BseDI CCNNGG 7 cut(s) 67, 99, 105, 114, 247, 490, 714
BseGI GGATG 6 cut(s) 306, 625, 685, 766, 906, 1167
BseLI CCNNNNNNNGG 4 cut(s) 100, 117, 391, 720
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 2 cut(s) 857, 1031
BsePI GCGCGC 3 cut(s) 169, 171, 173
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 423
Bsh1236I CGCG 7 cut(s) 158, 171, 173, 175, 177, 223, 290
BshFI GGCC 9 cut(s) 57, 104, 110, 333, 368, 542, 671, 713, 1015
BshNI GGYRCC 4 cut(s) 47, 284, 302, 323
BshTI ACCGGT 1 cut(s) 1046
BsiHKAI GWGCWC 1 cut(s) 357
BslFI GGGAC 3 cut(s) 368, 479, 764
BslI CCNNNNNNNGG 4 cut(s) 100, 117, 391, 720
BsmAI GTCTC 4 cut(s) 206, 322, 773, 1101
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 3 cut(s) 368, 479, 764
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 9 cut(s) 57, 104, 110, 333, 368, 542, 671, 713, 1015
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 4 cut(s) 147, 276, 652, 690
Bsp19I CCATGG 2 cut(s) 99, 114
BspANI GGCC 9 cut(s) 57, 104, 110, 333, 368, 542, 671, 713, 1015
BspCNI CTCAG 2 cut(s) 858, 1030
BspFNI CGCG 7 cut(s) 158, 171, 173, 175, 177, 223, 290
BspLI GGNNCC 5 cut(s) 49, 286, 304, 325, 752
BspMI ACCTGC 1 cut(s) 364
BspT107I GGYRCC 4 cut(s) 47, 284, 302, 323
BspTNI GGTCTC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 524
BsrFI RCCGGY 3 cut(s) 281, 1046, 1141
BssAI RCCGGY 3 cut(s) 281, 1046, 1141
BssECI CCNNGG 7 cut(s) 67, 99, 105, 114, 247, 490, 714
BssHII GCGCGC 3 cut(s) 169, 171, 173
BssMI GATC 4 cut(s) 147, 276, 652, 690
BssNI GRCGYC 6 cut(s) 153, 285, 303, 324, 381, 429
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 99, 114
Bst2BI CACGAG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 107, 419
Bst4CI ACNGT 4 cut(s) 202, 709, 796, 1195
Bst6I CTCTTC 1 cut(s) 969
BstACI GRCGYC 6 cut(s) 153, 285, 303, 324, 381, 429
BstAPI GCANNNNNTGC 1 cut(s) 361
BstC8I GCNNGC 5 cut(s) 171, 173, 175, 366, 531
BstDEI CTNAG 4 cut(s) 866, 912, 939, 1017
BstDSI CCRYGG 4 cut(s) 67, 99, 114, 714
BstF5I GGATG 6 cut(s) 306, 625, 685, 766, 906, 1167
BstFNI CGCG 7 cut(s) 158, 171, 173, 175, 177, 223, 290
BstH2I RGCGCY 4 cut(s) 129, 288, 306, 327
BstKTI GATC 4 cut(s) 150, 279, 655, 693
BstMAI GTCTC 4 cut(s) 206, 322, 773, 1101
BstMBI GATC 4 cut(s) 147, 276, 652, 690
BstNI CCWGG 2 cut(s) 107, 419
BstSCI CCNGG 6 cut(s) 105, 247, 417, 490, 916, 1102
BstUI CGCG 7 cut(s) 158, 171, 173, 175, 177, 223, 290
BstV1I GCAGC 1 cut(s) 423
BstXI CCANNNNNNTGG 2 cut(s) 106, 394
BsuRI GGCC 9 cut(s) 57, 104, 110, 333, 368, 542, 671, 713, 1015
BtgI CCRYGG 4 cut(s) 67, 99, 114, 714
BtrI CACGTC 4 cut(s) 37, 61, 358, 701
BtsCI GGATG 6 cut(s) 306, 625, 685, 766, 906, 1167
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 5 cut(s) 171, 173, 175, 366, 531
Cfr10I RCCGGY 3 cut(s) 281, 1046, 1141
Cfr13I GGNCC 4 cut(s) 103, 332, 415, 751
CseI GACGC 4 cut(s) 161, 370, 437, 1066
CsiI ACCWGGT 1 cut(s) 417
Csp6I GTAC 2 cut(s) 139, 208
CspAI ACCGGT 1 cut(s) 1046
CviAII CATG 5 cut(s) 100, 115, 274, 755, 1027
CviQI GTAC 2 cut(s) 139, 208
DdeI CTNAG 4 cut(s) 866, 912, 939, 1017
DinI GGCGCC 3 cut(s) 286, 304, 325
DpnI GATC 4 cut(s) 149, 278, 654, 692
DpnII GATC 4 cut(s) 147, 276, 652, 690
EaeI YGGCCR 4 cut(s) 55, 366, 669, 711
Eam1104I CTCTTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 969
Eco130I CCWWGG 2 cut(s) 99, 114
Eco147I AGGCCT 2 cut(s) 542, 1015
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 415, 751
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 2 cut(s) 105, 417
EcoT14I CCWWGG 2 cut(s) 99, 114
EgeI GGCGCC 3 cut(s) 286, 304, 325
EheI GGCGCC 3 cut(s) 286, 304, 325
ErhI CCWWGG 2 cut(s) 99, 114
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 5 cut(s) 103, 118, 277, 758, 1030
FaqI GGGAC 3 cut(s) 368, 479, 764
FatI CATG 5 cut(s) 99, 114, 273, 754, 1026
FauI CCCGC 1 cut(s) 714
FbaI TGATCA 1 cut(s) 276
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 6 cut(s) 90, 156, 178, 288, 341, 437
FokI GGATG 6 cut(s) 293, 632, 692, 773, 913, 1174
Fsp4HI GCNGC 6 cut(s) 90, 156, 178, 288, 341, 437
FspAI RTGCGCAY 1 cut(s) 234
FspBI CTAG 1 cut(s) 783
FspI TGCGCA 1 cut(s) 234
GluI GCNGC 6 cut(s) 90, 156, 178, 288, 341, 437
HaeII RGCGCY 4 cut(s) 129, 288, 306, 327
HaeIII GGCC 9 cut(s) 57, 104, 110, 333, 368, 542, 671, 713, 1015
HgaI GACGC 4 cut(s) 161, 370, 437, 1066
Hin1I GRCGYC 6 cut(s) 153, 285, 303, 324, 381, 429
Hin1II CATG 5 cut(s) 103, 118, 277, 758, 1030
HincII GTYRAC 3 cut(s) 40, 64, 241
HindII GTYRAC 3 cut(s) 40, 64, 241
HphI GGTGA 6 cut(s) 76, 88, 271, 790, 857, 1066
Hpy166II GTNNAC 4 cut(s) 40, 64, 241, 424
Hpy188I TCNGA 3 cut(s) 819, 879, 894
Hpy188III TCNNGA 2 cut(s) 268, 403
Hpy8I GTNNAC 4 cut(s) 40, 64, 241, 424
Hpy99I CGWCG 9 cut(s) 65, 146, 155, 206, 317, 332, 431, 481, 500
HpyAV CCTTC 4 cut(s) 343, 736, 964, 1175
HpyCH4III ACNGT 4 cut(s) 202, 709, 796, 1195
HpyCH4IV ACGT 6 cut(s) 36, 60, 237, 264, 357, 700
HpyCH4V TGCA 1 cut(s) 1004
HpyF3I CTNAG 4 cut(s) 866, 912, 939, 1017
HpySE526I ACGT 6 cut(s) 36, 60, 237, 264, 357, 700
Hsp92I GRCGYC 6 cut(s) 153, 285, 303, 324, 381, 429
Hsp92II CATG 5 cut(s) 103, 118, 277, 758, 1030
KasI GGCGCC 3 cut(s) 284, 302, 323
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 4 cut(s) 147, 276, 652, 690
LmnI GCTCC 3 cut(s) 166, 352, 1129
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 3 cut(s) 189, 327, 933
MabI ACCWGGT 1 cut(s) 417
MaeI CTAG 1 cut(s) 783
MaeII ACGT 6 cut(s) 36, 60, 237, 264, 357, 700
MaeIII GTNAC 5 cut(s) 251, 796, 845, 1042, 1054
MalI GATC 4 cut(s) 149, 278, 654, 692
MauBI CGCGCGCG 2 cut(s) 171, 173
MbiI CCGCTC 1 cut(s) 22
MboI GATC 4 cut(s) 147, 276, 652, 690
MboII GAAGA 6 cut(s) 37, 892, 979, 986, 1102, 1129
MhlI GDGCHC 1 cut(s) 357
MlsI TGGCCA 2 cut(s) 368, 713
MluCI AATT 4 cut(s) 452, 485, 594, 633
MluNI TGGCCA 2 cut(s) 368, 713
Mly113I GGCGCC 3 cut(s) 285, 303, 324
Mox20I TGGCCA 2 cut(s) 368, 713
MroXI GAANNNNTTC 1 cut(s) 813
MscI TGGCCA 2 cut(s) 368, 713
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 759
Msp20I TGGCCA 2 cut(s) 368, 713
MspR9I CCNGG 6 cut(s) 107, 249, 419, 492, 918, 1104
MteI GCGCNGCGC 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 988
MvaI CCWGG 2 cut(s) 107, 419
MvnI CGCG 7 cut(s) 158, 171, 173, 175, 177, 223, 290
NarI GGCGCC 3 cut(s) 285, 303, 324
NciI CCSGG 4 cut(s) 249, 492, 918, 1104
NcoI CCATGG 2 cut(s) 99, 114
NdeII GATC 4 cut(s) 147, 276, 652, 690
NlaIII CATG 5 cut(s) 103, 118, 277, 758, 1030
NlaIV GGNNCC 5 cut(s) 49, 286, 304, 325, 752
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 5 cut(s) 251, 796, 845, 1042, 1054
NsbI TGCGCA 1 cut(s) 234
PauI GCGCGC 3 cut(s) 169, 171, 173
PceI AGGCCT 2 cut(s) 542, 1015
PcsI WCGNNNNNNNCGW 3 cut(s) 60, 147, 261
PctI GAATGC 1 cut(s) 988
PdmI GAANNNNTTC 1 cut(s) 813
PflFI GACNNNGTC 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 1046
PkrI GCNGC 6 cut(s) 91, 157, 179, 289, 342, 438
PluTI GGCGCC 3 cut(s) 288, 306, 327
PsiI TTATAA 1 cut(s) 1136
Psp6I CCWGG 2 cut(s) 105, 417
PspGI CCWGG 2 cut(s) 105, 417
PspN4I GGNNCC 5 cut(s) 49, 286, 304, 325, 752
PspPI GGNCC 4 cut(s) 103, 332, 415, 751
PsyI GACNNNGTC 1 cut(s) 263
PteI GCGCGC 3 cut(s) 169, 171, 173
RsaI GTAC 2 cut(s) 140, 209
RsaNI GTAC 2 cut(s) 139, 208
RseI CAYNNNNRTG 1 cut(s) 759
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 6 cut(s) 90, 156, 178, 288, 341, 437
Sau3AI GATC 4 cut(s) 147, 276, 652, 690
Sau96I GGNCC 4 cut(s) 103, 332, 415, 751
ScrFI CCNGG 6 cut(s) 107, 249, 419, 492, 918, 1104
SduI GDGCHC 1 cut(s) 357
SexAI ACCWGGT 1 cut(s) 417
SfaNI GCATC 3 cut(s) 189, 327, 933
SfoI GGCGCC 3 cut(s) 286, 304, 325
SgrAI CRCCGGYG 1 cut(s) 281
SinI GGWCC 2 cut(s) 415, 751
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 452, 485, 594, 633
SseBI AGGCCT 2 cut(s) 542, 1015
SspDI GGCGCC 3 cut(s) 284, 302, 323
SspMI CTAG 1 cut(s) 783
StuI AGGCCT 2 cut(s) 542, 1015
StyD4I CCNGG 6 cut(s) 105, 247, 417, 490, 916, 1102
StyI CCWWGG 2 cut(s) 99, 114
TaaI ACNGT 4 cut(s) 202, 709, 796, 1195
TaiI ACGT 6 cut(s) 39, 63, 240, 267, 360, 703
TaqI TCGA 6 cut(s) 18, 63, 150, 204, 689, 1088
TasI AATT 4 cut(s) 452, 485, 594, 633
TauI GCSGC 5 cut(s) 92, 158, 180, 290, 343
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TseFI GTSAC 5 cut(s) 251, 796, 845, 1042, 1054
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 5 cut(s) 251, 796, 845, 1042, 1054
TspDTI ATGAA 3 cut(s) 498, 594, 1082
Tth111I GACNNNGTC 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 415, 751
XapI RAATTY 2 cut(s) 485, 594
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.