Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Forward (+)

20652409 .. 20655088

Gene Structure 2680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAGGATCCCGAATAAATATCAATGTATTGAAACATATCAATCTTGTTCTGCATCGTCCTCCATTCACAACCAGTTTTACACATACATCAAGTTAACAATTTTCTTCATATTTCCTTCCTCCTGTTTGCTCAAAATGGCTCTTTCACTCACTATTGAGAAAGAACTTGCTCAAAACTCAGAAAGAATTAAGTCTGTGGATCTACATCCAACTGAGCCATGGGTTCTGGTCAGTTTGTATTCAGGTGCTGTTTGTATCTGGAATTACCAATCACAGACCATGGAGAAGTCCTTCAAGGTCACTGAATCACCAGTCAGGTCAGCAAAGTTTGTAGCACGCGAACACTGGATAGTAACCGCGGCTGATGACACATTTATTCGCGTCTACAACTATGACACGACGGAAAAGATCAAAGAGTTTGAAGCACATACAGATTATGTCAGGAGTGTGACTGTCCATCCTACTCTACCTTATCTCTTGTCATGCTCGGACGACAACGTTATAAAGCTTTGGGATTGGGAGAAGGATTGGTCATGCACTCAGATCTTTGAGGGACATTCTCACTATGTGATGCAGGTGGCGTTCAATCCACATGACGCCGATACTTTTTCCAGTGCGTCTCTTGATGGCACTGTCAAGGTATGGAAGATTGGCACCGCTGCTCAGGAGTTTACATTAGAGGGCCACTTAAAGGGAGTGAATTGTGTTGATTACTTCATTCACAACGATAAAACGTATCTATTGAGTGGCTCTGACGATTTTACTGTTAAGGTATGGGACTACGAAACCAAAAGCTGTGTCCAAACTTTAGAAGGCCATGAGCACAATGTAACTGCTGTATGTGTTCATCCTGAGCTTCCCATAATAATCACAGCTTCTGAGGATGGGAATGTTCACATTTGGCATGCAACCACTTTTAGGCTTGAAAAGAGACTGAGCTACGATCTCGAAAGAGTTTGGGCCATCGCACACTCGAAAGGATCAGACAAAGTTGCATTTGGATTTGACAAAGGAATAGTTGTGGTTAAAATGAATGGGTCTGTTGATCTCCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

353

Amino Acids

40.21

Weight (kDa)

5.71

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	46 - 216	2.8e-17	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	50 - 159	5.9e-12	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	55 - 220	3.6e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	55 - 201	3.3e-20	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	56 - 219	1.1e-27	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	58 - 150	2.8e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	58 - 171	1.1e-08	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	60 - 176	2.3e-17	Prp19 WD40 domain
WDR55	PF24796	61 - 244	2.7e-17	WDR55
Beta-prop_SCAP	PF24017	86 - 304	1.3e-07	SCAP Beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	97 - 217	6.2e-09	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	103 - 176	6.2e-11	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	114 - 209	3.1e-09	G protein beta WD-40 repeat protein
Beta-prop_WDR75_1st	PF23869	121 - 174	2e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	136 - 172	3e-09	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	159 - 234	9.1e-14	THOC3 beta-propeller domain
Beta-prop_EIPR1	PF23609	159 - 215	7.4e-06	EIPR1 beta-propeller
Beta-prop_EML	PF23409	162 - 328	1.9e-10	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	177 - 215	6.7e-07	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	178 - 226	2.6e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	179 - 332	1.1e-27	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	180 - 237	5.1e-06	Prp19 WD40 domain
EIF3I	PF24805	183 - 270	2.4e-08	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	189 - 306	3.2e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	199 - 327	3.7e-28	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	203 - 340	4.9e-15	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	204 - 301	8.8e-13	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	205 - 301	3.1e-06	WDR36/Utp21 first beta-propeller
WD40	PF00400	224 - 260	1.1e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	225 - 313	8e-08	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	231 - 308	1e-14	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	231 - 338	7.2e-15	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	234 - 342	9e-09	CDC20/Fizzy WD40 domain
WDR55	PF24796	239 - 341	1.8e-10	WDR55
Beta-prop_WDR75_1st	PF23869	240 - 313	3.4e-08	WD repeat-containing protein 75 first beta-propeller
WD40_WDHD1_1st	PF24817	240 - 336	1.1e-14	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	242 - 302	1e-05	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	243 - 306	1.8e-07	TEP-1 second beta-propeller
WD40	PF00400	265 - 301	2.9e-09	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	278 - 342	4.3e-07	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AarI	CACCTGC	1 cut(s)	565
Acc36I	ACCTGC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	3 cut(s)	339, 359, 381
AciI	CCGC	3 cut(s)	357, 359, 657
AclI	AACGTT	1 cut(s)	498
AclWI	GGATC	3 cut(s)	14, 207, 988
AcyI	GRCGYC	1 cut(s)	597
AdeI	CACNNNGTG	1 cut(s)	568
AfiI	CCNNNNNNNGG	2 cut(s)	691, 918
AgsI	TTSAA	5 cut(s)	32, 295, 422, 586, 926
AluBI	AGCT	6 cut(s)	508, 795, 856, 875, 939, 1055
AluI	AGCT	6 cut(s)	508, 795, 856, 875, 939, 1055
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	2 cut(s)	624, 925
AlwI	GGATC	3 cut(s)	14, 207, 988
AlwNI	CAGNNNCTG	2 cut(s)	248, 878
AoxI	GGCC	3 cut(s)	682, 814, 960
ApeKI	GCWGC	1 cut(s)	659
ArsI	GACNNNNNNTTYG	2 cut(s)	783, 815
Asp700I	GAANNNNTTC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	682, 960
AsuHPI	GGTGA	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	4 cut(s)	465, 620, 878, 971
BcoDI	GTCTC	2 cut(s)	624, 925
BfuAI	ACCTGC	1 cut(s)	565
BglII	AGATCT	1 cut(s)	543
BisI	GCNGC	2 cut(s)	360, 660
BlsI	GCNGC	2 cut(s)	361, 661
BmgT120I	GGNCC	2 cut(s)	682, 960
BmiI	GGNNCC	2 cut(s)	8, 655
BmsI	GCATC	2 cut(s)	62, 561
Bpu10I	CCTNAGC	2 cut(s)	663, 852
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	597
BsaJI	CCNNGG	3 cut(s)	218, 279, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	691, 918
Bse1I	ACTGG	4 cut(s)	73, 311, 350, 612
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	218, 279, 357
BseGI	GGATG	4 cut(s)	205, 457, 847, 889
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	691, 918
BseMII	CTCAG	7 cut(s)	192, 204, 554, 677, 843, 870, 926
BseNI	ACTGG	4 cut(s)	73, 311, 350, 612
BseXI	GCAGC	1 cut(s)	646
Bsh1236I	CGCG	3 cut(s)	339, 359, 381
BshFI	GGCC	3 cut(s)	684, 816, 962
BshNI	GGYRCC	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	825
BslFI	GGGAC	2 cut(s)	567, 791
BslI	CCNNNNNNNGG	2 cut(s)	691, 918
BsmAI	GTCTC	2 cut(s)	624, 925
BsmBI	CGTCTC	1 cut(s)	624
BsmFI	GGGAC	2 cut(s)	567, 791
BsnI	GGCC	3 cut(s)	684, 816, 962
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp143I	GATC	7 cut(s)	6, 199, 408, 543, 943, 980, 1045
Bsp19I	CCATGG	2 cut(s)	218, 279
BspACI	CCGC	3 cut(s)	357, 359, 657
BspANI	GGCC	3 cut(s)	684, 816, 962
BspCNI	CTCAG	7 cut(s)	191, 205, 553, 676, 844, 871, 927
BspFNI	CGCG	3 cut(s)	339, 359, 381
BspLI	GGNNCC	2 cut(s)	8, 655
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	3 cut(s)	14, 207, 988
BspT107I	GGYRCC	1 cut(s)	653
BsrI	ACTGG	4 cut(s)	73, 311, 350, 612
BssECI	CCNNGG	3 cut(s)	218, 279, 357
BssMI	GATC	7 cut(s)	6, 199, 408, 543, 943, 980, 1045
BssNI	GRCGYC	1 cut(s)	597
BssT1I	CCWWGG	2 cut(s)	218, 279
Bst4CI	ACNGT	3 cut(s)	454, 634, 766
BstACI	GRCGYC	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	337, 906
BstDEI	CTNAG	8 cut(s)	178, 213, 540, 663, 852, 879, 935, 1056
BstDSI	CCRYGG	3 cut(s)	218, 279, 357
BstF5I	GGATG	4 cut(s)	205, 457, 847, 889
BstFNI	CGCG	3 cut(s)	339, 359, 381
BstKTI	GATC	7 cut(s)	9, 202, 411, 546, 946, 983, 1048
BstMAI	GTCTC	2 cut(s)	624, 925
BstMBI	GATC	7 cut(s)	6, 199, 408, 543, 943, 980, 1045
BstNSI	RCATGY	1 cut(s)	908
BstUI	CGCG	3 cut(s)	339, 359, 381
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	3 cut(s)	6, 199, 543
BstYI	RGATCY	3 cut(s)	6, 199, 543
BsuRI	GGCC	3 cut(s)	684, 816, 962
BtgI	CCRYGG	3 cut(s)	218, 279, 357
BtgZI	GCGATG	1 cut(s)	949
BtsCI	GGATG	4 cut(s)	205, 457, 847, 889
BtsIMutI	CAGTG	4 cut(s)	300, 343, 619, 630
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	337, 906
CaiI	CAGNNNCTG	2 cut(s)	248, 878
Cfr13I	GGNCC	2 cut(s)	682, 960
Cfr42I	CCGCGG	1 cut(s)	360
CseI	GACGC	3 cut(s)	370, 605, 606
CviAII	CATG	7 cut(s)	219, 280, 483, 534, 593, 818, 905
DdeI	CTNAG	8 cut(s)	178, 213, 540, 663, 852, 879, 935, 1056
DpnI	GATC	7 cut(s)	8, 201, 410, 545, 945, 982, 1047
DpnII	GATC	7 cut(s)	6, 199, 408, 543, 943, 980, 1045
DraIII	CACNNNGTG	1 cut(s)	568
Eco130I	CCWWGG	2 cut(s)	218, 279
EcoT14I	CCWWGG	2 cut(s)	218, 279
ErhI	CCWWGG	2 cut(s)	218, 279
Esp3I	CGTCTC	1 cut(s)	624
FaeI	CATG	7 cut(s)	222, 283, 486, 537, 596, 821, 908
FaqI	GGGAC	2 cut(s)	567, 791
FatI	CATG	7 cut(s)	218, 279, 482, 533, 592, 817, 904
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	360, 660
FokI	GGATG	4 cut(s)	192, 444, 834, 896
Fsp4HI	GCNGC	2 cut(s)	360, 660
GluI	GCNGC	2 cut(s)	360, 660
HaeIII	GGCC	3 cut(s)	684, 816, 962
HgaI	GACGC	3 cut(s)	370, 605, 606
Hin1I	GRCGYC	1 cut(s)	597
Hin1II	CATG	7 cut(s)	222, 283, 486, 537, 596, 821, 908
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	2 cut(s)	506, 1053
HinfI	GANTC	1 cut(s)	305
HpaI	GTTAAC	1 cut(s)	96
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	4 cut(s)	96, 385, 672, 895
Hpy188I	TCNGA	6 cut(s)	181, 490, 543, 754, 880, 985
Hpy188III	TCNNGA	7 cut(s)	10, 259, 442, 623, 665, 851, 947
Hpy8I	GTNNAC	4 cut(s)	96, 385, 672, 895
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	4 cut(s)	126, 301, 517, 806
HpyCH4III	ACNGT	3 cut(s)	454, 634, 766
HpyCH4IV	ACGT	2 cut(s)	498, 734
HpyCH4V	TGCA	5 cut(s)	53, 537, 574, 908, 995
HpyF3I	CTNAG	8 cut(s)	178, 213, 540, 663, 852, 879, 935, 1056
HpySE526I	ACGT	2 cut(s)	498, 734
Hsp92I	GRCGYC	1 cut(s)	597
Hsp92II	CATG	7 cut(s)	222, 283, 486, 537, 596, 821, 908
KspAI	GTTAAC	1 cut(s)	96
KspI	CCGCGG	1 cut(s)	360
Kzo9I	GATC	7 cut(s)	6, 199, 408, 543, 943, 980, 1045
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	2 cut(s)	62, 561
MaeII	ACGT	2 cut(s)	498, 734
MaeIII	GTNAC	4 cut(s)	298, 352, 448, 829
MalI	GATC	7 cut(s)	8, 201, 410, 545, 945, 982, 1047
MboI	GATC	7 cut(s)	6, 199, 408, 543, 943, 980, 1045
MboII	GAAGA	2 cut(s)	97, 658
MflI	RGATCY	3 cut(s)	6, 199, 543
MhlI	GDGCHC	1 cut(s)	825
MluCI	AATT	4 cut(s)	99, 186, 262, 700
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	70, 130, 544, 673, 874
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	5 cut(s)	95, 189, 689, 768, 1026
MspA1I	CMGCKG	2 cut(s)	359, 659
MvnI	CGCG	3 cut(s)	339, 359, 381
NcoI	CCATGG	2 cut(s)	218, 279
NdeII	GATC	7 cut(s)	6, 199, 408, 543, 943, 980, 1045
NlaIII	CATG	7 cut(s)	222, 283, 486, 537, 596, 821, 908
NlaIV	GGNNCC	2 cut(s)	8, 655
NmuCI	GTSAC	2 cut(s)	298, 448
NspI	RCATGY	1 cut(s)	908
PaeI	GCATGC	1 cut(s)	908
PaqCI	CACCTGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	361, 661
PsiI	TTATAA	1 cut(s)	503
Psp1406I	AACGTT	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	8, 655
PspPI	GGNCC	2 cut(s)	682, 960
PstNI	CAGNNNCTG	2 cut(s)	248, 878
PsuI	RGATCY	3 cut(s)	6, 199, 543
SacII	CCGCGG	1 cut(s)	360
SaqAI	TTAA	5 cut(s)	95, 189, 689, 768, 1026
SatI	GCNGC	2 cut(s)	360, 660
Sau3AI	GATC	7 cut(s)	6, 199, 408, 543, 943, 980, 1045
Sau96I	GGNCC	2 cut(s)	682, 960
SduI	GDGCHC	1 cut(s)	825
SfaNI	GCATC	2 cut(s)	62, 561
Sfr303I	CCGCGG	1 cut(s)	360
SgrBI	CCGCGG	1 cut(s)	360
SphI	GCATGC	1 cut(s)	908
Sse9I	AATT	4 cut(s)	99, 186, 262, 700
SsiI	CCGC	3 cut(s)	357, 359, 657
StyI	CCWWGG	2 cut(s)	218, 279
TaaI	ACNGT	3 cut(s)	454, 634, 766
TaiI	ACGT	2 cut(s)	501, 737
TaqI	TCGA	2 cut(s)	948, 974
TasI	AATT	4 cut(s)	99, 186, 262, 700
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	5 cut(s)	95, 189, 689, 768, 1026
Tru9I	TTAA	5 cut(s)	95, 189, 689, 768, 1026
TscAI	CASTG	4 cut(s)	307, 350, 619, 637
TseFI	GTSAC	2 cut(s)	298, 448
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	2 cut(s)	298, 448
TspDTI	ATGAA	4 cut(s)	97, 706, 836, 1046
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	4 cut(s)	307, 350, 619, 637
XceI	RCATGY	1 cut(s)	908
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.