Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002286

Physical Location & Seq

Genomic Coordinates Forward (+)

20808150 .. 20811082

Gene Structure 2933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16570.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGCCACTGTTTGACCCACCTAGGCATGACAGTGCAGAGACAATAAGGAGGGCATTAAATCTTGGAGTGAACGTGAAGATGATTACTGGGGATCAACTGGCAATTGGAAAGGAAACTGGACGTCGCTTGGGGATGGGAACCAATATGTACCCTTCATCTGCTTTGCTAGGACAGGACAAGGATGAGTCAATTGTTGCTTTACCGATTGACGAGCTGATAGAAAAAGCTGACGGCTTTGCTGGGGTTTTCCCAGAGCACAAATACGAGATTGTGAAACGCTTGCAAGCTAGGAAACATATATGTGGAATGACTGGTGATGGAGTAAATGATGCTCCTGCCCTTAAAAAAGCTGATATTGGTATAGCTGTTGCTGATGCAACAGATGCTGCTCGTAGTGCTTCTGATATTGTGCTTACTGAACCTGGCCTTAGTGTCATCATTAGTGCTGTTTTGACCAGTCGGGCAATCTTCCAGAGGATGAAAAATTACACAATATATGCTGTTTCCATCACAATTCGTATCGTGCTTGGCTTCATGTTGCTGGCTCTCATATGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATTATTGCGATCCTCAATGATGGTACTATCATGACAATATCAAAGGACAGGGTTAAACCGTCTCCTCTGCCAGATAGCTGGAAGCTGGCCGAGATTTTTGCAACTGGAATAGTGCTTGGAAGTTACTTGGCAATAATGACTGTGATATTCTTTTGGGCAGCATACAAAACAGACTTCTTCCCAAGAACATTTGGGGTGTCAACCCTTGAGAAAACAGCTAATGATGACTTTCGGAAGCTTGCCTCTGCTATATATCTACAAGTGAGCATTATTAGCCAGGCTCTGATATTTGTTACACGGTCTCGAAGTTGGTCGTTTATTGAGCGTCCTGGACTGTTGCTTGTGGTGGCTTTTATAATAGCTCAGCTGATTGCGACCTTGATTGCGGTCTATGCAAACTGGAGTTTTGCTGCCATTGAGGGGATCGGATGGGGTTGGGCCGGGGTGATCTGGCTTTATAATATAGTCACATATATCCCTCTGGATATCATAAAATTCATGATACGCTACGCTCTGAGTGGGAAGGCTTGGGATCTTCTGATTGAACAGAGGGTTGCTTTCACAAGGCAAAAGGACTTTGGAAAGGAACAACGAGAGCTTCAATGGGCACACGCACAAAGGACATTGCACGGGTTGCAACCACCGGACACCAAGATGTTTACAGAACGAACACATTTCTCAGAACTCAATCAGATCGCCGAAGAAGCCAAAAGAAGAGCTGAGATTGCAAGATTGAGGGAACTCACTACGCTGAAAGGCCACGTAGAATCCGTGGTGAGATTGAAGGGGCTGGACATTGACACGATTCAGCAATCATACACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

471

Amino Acids

52.57

Weight (kDa)

9.02

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47950 AT3G47950 AT5G62670
fragaria_vesca	FvH4_5g15700 FvH4_5g15700 FvH4_5g15700 FvH4_5g15700 FvH4_6g49360
malus_domestica	MD06G1186400.v1.1 MD14G1192600.v1.1 MD17G1046600.v1.1
prunus_persica	Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.5G185000_v2.0.a1
pyrus_communis	pycom06g16560 pycom06g16570 pycom14g16020 pycom17g04150
rosa_chinensis	RchiOBHm_Chr2g0169231 RchiOBHm_Chr7g0180411
rosa_laevigata	RLG00000005268 RLG00000021844
rosa_multiflora	Rmu_co8446409.1_g000001 Rmu_sc0003526.1_g000005 Rmu_ssc0000440.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082330 Rroxscaffold_3G00272910
rosa_rugosa	Rorug02G0538400 Rorug06G0432800 Rorug06G0432900 Rorug06G0432900
rosa_samantha	Rh2AG609900 Rh2BG622800 Rh2CG591300 Rh7AG033500 Rh7BG033500 Rh7CG035400 Rh7DG033900
rosa_wichuraiana	Rw2G050570 Rw7G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	941, 1044
AatII	GACGTC	1 cut(s)	124
AciI	CCGC	1 cut(s)	971
AclWI	GGATC	4 cut(s)	99, 589, 1016, 1125
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	1079
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	2 cut(s)	149, 610
AfiI	CCNNNNNNNGG	1 cut(s)	1005
AgsI	TTSAA	3 cut(s)	1130, 1187, 1369
AjnI	CCWGG	3 cut(s)	421, 861, 913
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	32, 651, 891
AlwI	GGATC	4 cut(s)	99, 589, 1016, 1125
AlwNI	CAGNNNCTG	2 cut(s)	386, 868
AoxI	GGCC	4 cut(s)	424, 672, 1023, 1342
ApeKI	GCWGC	3 cut(s)	386, 743, 995
ApoI	RAATTY	1 cut(s)	1079
AspA2I	CCTAGG	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	1023
AsuC2I	CCSGG	1 cut(s)	1027
AsuHPI	GGTGA	3 cut(s)	326, 1042, 1372
AvrII	CCTAGG	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	1195
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	373, 755, 982
BccI	CCATC	5 cut(s)	127, 311, 515, 599, 1008
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	3 cut(s)	423, 863, 915
BcnI	CCSGG	1 cut(s)	1027
BcoDI	GTCTC	3 cut(s)	32, 651, 891
BfaI	CTAG	3 cut(s)	21, 167, 288
BisI	GCNGC	3 cut(s)	387, 744, 996
BlnI	CCTAGG	1 cut(s)	20
BlpI	GCTNAGC	1 cut(s)	948
BlsI	GCNGC	3 cut(s)	388, 745, 997
Bme1390I	CCNGG	4 cut(s)	423, 863, 915, 1027
BmgT120I	GGNCC	1 cut(s)	1023
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	4 cut(s)	423, 863, 915, 1027
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	3 cut(s)	319, 364, 373
BmuI	ACTGGG	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	1006
Bpu1102I	GCTNAGC	1 cut(s)	948
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	1027
BsaAI	YACGTR	1 cut(s)	1348
BsaHI	GRCGYC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	891
BsaJI	CCNNGG	3 cut(s)	20, 1026, 1356
BsaWI	WCCGGW	1 cut(s)	1228
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	1005
Bse1I	ACTGG	7 cut(s)	91, 102, 121, 316, 456, 694, 989
Bse3DI	GCAATG	1 cut(s)	1208
BseBI	CCWGG	3 cut(s)	423, 863, 915
BseDI	CCNNGG	3 cut(s)	20, 1026, 1356
BseGI	GGATG	4 cut(s)	138, 187, 483, 1019
BseLI	CCNNNNNNNGG	1 cut(s)	1005
BseMI	GCAATG	1 cut(s)	1208
BseMII	CTCAG	4 cut(s)	962, 1091, 1278, 1296
BseNI	ACTGG	7 cut(s)	91, 102, 121, 316, 456, 694, 989
BseRI	GAGGAG	1 cut(s)	639
BseSI	GKGCMC	1 cut(s)	1195
BseXI	GCAGC	3 cut(s)	373, 755, 982
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	426, 674, 1025, 1344
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	1026, 1229
BslI	CCNNNNNNNGG	1 cut(s)	1005
BsmAI	GTCTC	3 cut(s)	32, 651, 891
BsmBI	CGTCTC	1 cut(s)	651
BsnI	GGCC	4 cut(s)	426, 674, 1025, 1344
Bso31I	GGTCTC	1 cut(s)	891
Bsp1286I	GDGCHC	2 cut(s)	258, 1195
Bsp143I	GATC	6 cut(s)	91, 594, 1008, 1032, 1117, 1278
Bsp1720I	GCTNAGC	1 cut(s)	948
BspACI	CCGC	1 cut(s)	971
BspANI	GGCC	4 cut(s)	426, 674, 1025, 1344
BspCNI	CTCAG	4 cut(s)	961, 1092, 1277, 1297
BspHI	TCATGA	2 cut(s)	615, 1083
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	4 cut(s)	99, 589, 1016, 1125
BspQI	GCTCTTC	1 cut(s)	1294
BspTNI	GGTCTC	1 cut(s)	891
BsrDI	GCAATG	1 cut(s)	1208
BsrI	ACTGG	7 cut(s)	91, 102, 121, 316, 456, 694, 989
BssECI	CCNNGG	3 cut(s)	20, 1026, 1356
BssMI	GATC	6 cut(s)	91, 594, 1008, 1032, 1117, 1278
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	3 cut(s)	423, 863, 915
Bst4CI	ACNGT	7 cut(s)	9, 32, 645, 727, 885, 921, 1408
Bst6I	CTCTTC	1 cut(s)	1294
BstACI	GRCGYC	1 cut(s)	121
BstAPI	GCANNNNNTGC	2 cut(s)	383, 1219
BstBAI	YACGTR	1 cut(s)	1348
BstC8I	GCNNGC	5 cut(s)	281, 285, 543, 672, 825
BstDEI	CTNAG	5 cut(s)	428, 948, 1100, 1264, 1305
BstDSI	CCRYGG	1 cut(s)	1356
BstF5I	GGATG	4 cut(s)	138, 187, 483, 1019
BstKTI	GATC	6 cut(s)	94, 597, 1011, 1035, 1120, 1281
BstMAI	GTCTC	3 cut(s)	32, 651, 891
BstMBI	GATC	6 cut(s)	91, 594, 1008, 1032, 1117, 1278
BstMWI	GCNNNNNNNGC	7 cut(s)	383, 395, 858, 977, 1219, 1289, 1310
BstNI	CCWGG	3 cut(s)	423, 863, 915
BstSCI	CCNGG	4 cut(s)	421, 861, 913, 1025
BstSLI	GKGCMC	1 cut(s)	1195
BstV1I	GCAGC	3 cut(s)	373, 755, 982
BstX2I	RGATCY	1 cut(s)	1117
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	1117
BsuRI	GGCC	4 cut(s)	426, 674, 1025, 1344
BtgI	CCRYGG	1 cut(s)	1356
BtsCI	GGATG	4 cut(s)	138, 187, 483, 1019
BtsIMutI	CAGTG	2 cut(s)	5, 37
Cac8I	GCNNGC	5 cut(s)	281, 285, 543, 672, 825
CaiI	CAGNNNCTG	2 cut(s)	386, 868
CciI	TCATGA	2 cut(s)	615, 1083
Cfr13I	GGNCC	1 cut(s)	1023
CseI	GACGC	1 cut(s)	899
Csp6I	GTAC	2 cut(s)	148, 609
CviAII	CATG	5 cut(s)	26, 535, 577, 616, 1084
CviQI	GTAC	2 cut(s)	148, 609
DdeI	CTNAG	5 cut(s)	428, 948, 1100, 1264, 1305
DpnI	GATC	6 cut(s)	93, 596, 1010, 1034, 1119, 1280
DpnII	GATC	6 cut(s)	91, 594, 1008, 1032, 1117, 1278
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	1294
EarI	CTCTTC	1 cut(s)	1294
Eco130I	CCWWGG	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	891
Eco32I	GATATC	1 cut(s)	1072
EcoRII	CCWGG	3 cut(s)	421, 861, 913
EcoRV	GATATC	1 cut(s)	1072
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	651
FaeI	CATG	5 cut(s)	29, 538, 580, 619, 1087
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FatI	CATG	5 cut(s)	25, 534, 576, 615, 1083
FauNDI	CATATG	1 cut(s)	551
Fnu4HI	GCNGC	3 cut(s)	387, 744, 996
FokI	GGATG	4 cut(s)	145, 194, 490, 1026
Fsp4HI	GCNGC	3 cut(s)	387, 744, 996
FspBI	CTAG	3 cut(s)	21, 167, 288
GluI	GCNGC	3 cut(s)	387, 744, 996
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	1006
HaeIII	GGCC	4 cut(s)	426, 674, 1025, 1344
HapII	CCGG	2 cut(s)	1026, 1229
HgaI	GACGC	1 cut(s)	899
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	5 cut(s)	29, 538, 580, 619, 1087
HincII	GTYRAC	1 cut(s)	786
HindII	GTYRAC	1 cut(s)	786
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	3 cut(s)	185, 1352, 1390
HpaII	CCGG	2 cut(s)	1026, 1229
HphI	GGTGA	3 cut(s)	326, 1042, 1372
Hpy166II	GTNNAC	3 cut(s)	70, 786, 1245
Hpy188I	TCNGA	8 cut(s)	403, 819, 870, 1013, 1101, 1125, 1267, 1278
Hpy188III	TCNNGA	5 cut(s)	472, 616, 888, 1067, 1084
Hpy8I	GTNNAC	3 cut(s)	70, 786, 1245
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	3 cut(s)	162, 1102, 1363
HpyCH4III	ACNGT	7 cut(s)	9, 32, 645, 727, 885, 921, 1408
HpyCH4IV	ACGT	3 cut(s)	72, 121, 1347
HpyCH4V	TGCA	8 cut(s)	35, 283, 377, 686, 980, 1213, 1222, 1313
HpyF10VI	GCNNNNNNNGC	7 cut(s)	383, 395, 858, 977, 1219, 1289, 1310
HpyF3I	CTNAG	5 cut(s)	428, 948, 1100, 1264, 1305
HpySE526I	ACGT	3 cut(s)	72, 121, 1347
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	5 cut(s)	29, 538, 580, 619, 1087
Kzo9I	GATC	6 cut(s)	91, 594, 1008, 1032, 1117, 1278
LguI	GCTCTTC	1 cut(s)	1294
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	3 cut(s)	373, 755, 982
LweI	GCATC	3 cut(s)	319, 364, 373
MaeI	CTAG	3 cut(s)	21, 167, 288
MaeII	ACGT	3 cut(s)	72, 121, 1347
MaeIII	GTNAC	3 cut(s)	707, 877, 1051
MalI	GATC	6 cut(s)	93, 596, 1010, 1034, 1119, 1280
MboI	GATC	6 cut(s)	91, 594, 1008, 1032, 1117, 1278
MboII	GAAGA	6 cut(s)	88, 460, 754, 1112, 1298, 1311
MfeI	CAATTG	2 cut(s)	102, 189
MflI	RGATCY	1 cut(s)	1117
MhlI	GDGCHC	2 cut(s)	258, 1195
MluCI	AATT	5 cut(s)	102, 189, 484, 513, 1079
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	9 cut(s)	42, 468, 608, 660, 838, 997, 1074, 1128, 1314
MseI	TTAA	4 cut(s)	56, 342, 639, 1411
MslI	CAYNNNNRTG	3 cut(s)	30, 300, 1238
MspA1I	CMGCKG	1 cut(s)	952
MspI	CCGG	2 cut(s)	1026, 1229
MspR9I	CCNGG	4 cut(s)	423, 863, 915, 1027
MunI	CAATTG	2 cut(s)	102, 189
MvaI	CCWGG	3 cut(s)	423, 863, 915
MwoI	GCNNNNNNNGC	7 cut(s)	383, 395, 858, 977, 1219, 1289, 1310
NciI	CCSGG	1 cut(s)	1027
NdeI	CATATG	1 cut(s)	551
NdeII	GATC	6 cut(s)	91, 594, 1008, 1032, 1117, 1278
NlaIII	CATG	5 cut(s)	29, 538, 580, 619, 1087
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	700
NmuCI	GTSAC	1 cut(s)	1051
PagI	TCATGA	2 cut(s)	615, 1083
PciSI	GCTCTTC	1 cut(s)	1294
PcsI	WCGNNNNNNNCGW	1 cut(s)	1353
PfeI	GAWTC	2 cut(s)	1352, 1390
PfoI	TCCNGGA	1 cut(s)	913
PkrI	GCNGC	3 cut(s)	388, 745, 997
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	1348
PsiI	TTATAA	2 cut(s)	941, 1044
Psp6I	CCWGG	3 cut(s)	421, 861, 913
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	3 cut(s)	421, 861, 913
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	1023
PstNI	CAGNNNCTG	2 cut(s)	386, 868
PsuI	RGATCY	1 cut(s)	1117
PvuII	CAGCTG	1 cut(s)	952
RsaI	GTAC	2 cut(s)	149, 610
RsaNI	GTAC	2 cut(s)	148, 609
RseI	CAYNNNNRTG	3 cut(s)	30, 300, 1238
SapI	GCTCTTC	1 cut(s)	1294
SaqAI	TTAA	4 cut(s)	56, 342, 639, 1411
SatI	GCNGC	3 cut(s)	387, 744, 996
Sau3AI	GATC	6 cut(s)	91, 594, 1008, 1032, 1117, 1278
Sau96I	GGNCC	1 cut(s)	1023
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	4 cut(s)	423, 863, 915, 1027
SduI	GDGCHC	2 cut(s)	258, 1195
SfaNI	GCATC	3 cut(s)	319, 364, 373
SmiMI	CAYNNNNRTG	3 cut(s)	30, 300, 1238
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	5 cut(s)	102, 189, 484, 513, 1079
SsiI	CCGC	1 cut(s)	971
SspMI	CTAG	3 cut(s)	21, 167, 288
StyD4I	CCNGG	4 cut(s)	421, 861, 913, 1025
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	7 cut(s)	9, 32, 645, 727, 885, 921, 1408
TaiI	ACGT	3 cut(s)	75, 124, 1350
TaqI	TCGA	1 cut(s)	889
TasI	AATT	5 cut(s)	102, 189, 484, 513, 1079
TfiI	GAWTC	2 cut(s)	1352, 1390
Tru1I	TTAA	4 cut(s)	56, 342, 639, 1411
Tru9I	TTAA	4 cut(s)	56, 342, 639, 1411
TscAI	CASTG	2 cut(s)	12, 37
TseFI	GTSAC	1 cut(s)	1051
TseI	GCWGC	3 cut(s)	386, 743, 995
Tsp45I	GTSAC	1 cut(s)	1051
TspDTI	ATGAA	5 cut(s)	144, 494, 523, 565, 1072
TspGWI	ACGGA	1 cut(s)	1345
TspRI	CASTG	2 cut(s)	12, 37
XapI	RAATTY	1 cut(s)	1079
XmaJI	CCTAGG	1 cut(s)	20
XspI	CTAG	3 cut(s)	21, 167, 288
ZraI	GACGTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.