Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002286

Physical Location & Seq

Genomic Coordinates Reverse (-)

56774418 .. 56776689

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0432900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCTCGGTGCTTGCCTTACACGCCTTCCGTGAAGGCAGTGAATAGAGAGGCCTTGCTCGAACCGATTAAGCTCCAGAGAAAATTGGAGAAGAAAGCCAAGACACATAGGAAGAAGGAGAAGAAAGAGAAGGGGGAGAAGAGAAAATGGCATAAAGAGGATGAGTTATCTACTTGCGCTGTTATTTGGGGAGCGGATGCAATAGCAAGGGGCCCTCAAGTAGTAGAATCAAATCAACTGGAGAAAAGTGACATTACCGAAGAACGGTTGTCTGATAACATTTGCTACTTGTCTGATGGCATCCAAAGTGGCACAAAGAGGAAAAGAACCATCATTCGCATTAAATCATTGCCCAAGCGCAGTGATGCAGAGTCCTCACATGCCTCTTGTGCCGAGCATACTTCTGGGAAGTCAGATTTCCAAACAGATCTAAAGATGACAGAAATTGTTCATGCACCTAGTGCAGAGACAAATGTAGAATTTGAGGAAGCCACTTGTACTTCGGACCAAAAGGTGTCAACATGTGAAGACCATAGGGGTTTACTGCACCAGTCTTTGATTGGTAATTGGGTTCAACCTCTACTTCAGACAGCACACGACGATTGTGGTGATGAAGATTGGCTTTTTGAGACGAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAAAGCTAGCAATGAGGTGGTGTCCCGTTGTACAAGTCAGACGTTGTGGCCACAAGCACACTGGTTGCCTGAGCCTGGCTTATCCGCACTACCCTTTACTGTTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

258

Amino Acids

29.3

Weight (kDa)

7.11

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47950 AT3G47950 AT5G62670
fragaria_vesca	FvH4_5g15700 FvH4_5g15700 FvH4_5g15700 FvH4_5g15700 FvH4_6g49360
malus_domestica	MD06G1186400.v1.1 MD14G1192600.v1.1 MD17G1046600.v1.1
prunus_persica	Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.5G185000_v2.0.a1
pyrus_communis	pycom06g16560 pycom06g16570 pycom14g16020 pycom17g04150
rosa_chinensis	RchiOBHm_Chr2g0169231 RchiOBHm_Chr7g0180411
rosa_laevigata	RLG00000005268 RLG00000021844
rosa_multiflora	Rmu_co8446409.1_g000001 Rmu_sc0003526.1_g000005 Rmu_ssc0000440.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082330 Rroxscaffold_3G00272910
rosa_rugosa	Rorug02G0538400 Rorug06G0432800 Rorug06G0432900 Rorug06G0432900
rosa_samantha	Rh2AG609900 Rh2BG622800 Rh2CG591300 Rh7AG033500 Rh7BG033500 Rh7CG035400 Rh7DG033900
rosa_wichuraiana	Rw2G050570 Rw7G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	2 cut(s)	194, 750
AcoI	YGGCCR	1 cut(s)	713
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	569
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	499, 697
AfiI	CCNNNNNNNGG	2 cut(s)	264, 740
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	3 cut(s)	575, 659, 667
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	2 cut(s)	73, 671
AluI	AGCT	2 cut(s)	73, 671
Alw26I	GTCTC	3 cut(s)	9, 461, 623
AoxI	GGCC	3 cut(s)	51, 211, 713
ApaI	GGGCCC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	179, 360
AspS9I	GGNCC	3 cut(s)	211, 212, 505
AsuHPI	GGTGA	1 cut(s)	620
AsuNHI	GCTAGC	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	534
BccI	CCATC	2 cut(s)	290, 338
BciT130I	CCWGG	1 cut(s)	741
BcoDI	GTCTC	3 cut(s)	9, 461, 623
BfaI	CTAG	2 cut(s)	459, 672
BglII	AGATCT	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	211, 212, 505
BmiI	GGNNCC	2 cut(s)	212, 213
BmrFI	CCNGG	1 cut(s)	741
BmsI	GCATC	3 cut(s)	187, 309, 355
BmtI	GCTAGC	1 cut(s)	675
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	2 cut(s)	59, 260
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 740
Bse1I	ACTGG	3 cut(s)	243, 550, 731
Bse3DI	GCAATG	2 cut(s)	347, 682
BseBI	CCWGG	1 cut(s)	741
BseGI	GGATG	3 cut(s)	166, 202, 300
BseLI	CCNNNNNNNGG	2 cut(s)	264, 740
BseMI	GCAATG	2 cut(s)	347, 682
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	3 cut(s)	243, 550, 731
BseSI	GKGCMC	1 cut(s)	215
BsgI	GTGCAG	2 cut(s)	483, 530
BshFI	GGCC	3 cut(s)	53, 213, 715
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	2 cut(s)	264, 740
BsmAI	GTCTC	3 cut(s)	9, 461, 623
BsmBI	CGTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	673
BsnI	GGCC	3 cut(s)	53, 213, 715
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	695
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	2 cut(s)	194, 750
BspANI	GGCC	3 cut(s)	53, 213, 715
BspCNI	CTCAG	1 cut(s)	727
BspLI	GGNNCC	2 cut(s)	212, 213
BspOI	GCTAGC	1 cut(s)	675
BsrBI	CCGCTC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	347, 682
BsrGI	TGTACA	1 cut(s)	695
BsrI	ACTGG	3 cut(s)	243, 550, 731
BssMI	GATC	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	267, 766
Bst6I	CTCTTC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	14, 673
BstDEI	CTNAG	1 cut(s)	735
BstF5I	GGATG	3 cut(s)	166, 202, 300
BstHHI	GCGC	2 cut(s)	179, 360
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	3 cut(s)	9, 461, 623
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 389, 461
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	2 cut(s)	383, 525
BstSCI	CCNGG	1 cut(s)	739
BstSLI	GKGCMC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	3 cut(s)	53, 213, 715
BtsCI	GGATG	3 cut(s)	166, 202, 300
BtsI	GCAGTG	2 cut(s)	45, 367
BtsIMutI	CAGTG	3 cut(s)	45, 367, 724
Cac8I	GCNNGC	2 cut(s)	14, 673
CfoI	GCGC	2 cut(s)	179, 360
Cfr13I	GGNCC	3 cut(s)	211, 212, 505
Csp6I	GTAC	2 cut(s)	498, 696
CviAII	CATG	3 cut(s)	380, 452, 522
CviQI	GTAC	2 cut(s)	498, 696
DdeI	CTNAG	1 cut(s)	735
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
DraIII	CACNNNGTG	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	713
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	569
EcoO109I	RGGNCCY	2 cut(s)	211, 212
EcoRII	CCWGG	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	215
Esp3I	CGTCTC	1 cut(s)	623
FaeI	CATG	3 cut(s)	383, 455, 525
FaiI	YATR	7 cut(s)	108, 153, 381, 399, 453, 523, 534
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	3 cut(s)	379, 451, 521
FokI	GGATG	3 cut(s)	173, 209, 287
FriOI	GRGCYC	1 cut(s)	215
FspBI	CTAG	2 cut(s)	459, 672
GlaI	GCGC	2 cut(s)	178, 359
GsuI	CTGGAG	2 cut(s)	59, 260
HaeIII	GGCC	3 cut(s)	53, 213, 715
HhaI	GCGC	2 cut(s)	179, 360
Hin1II	CATG	3 cut(s)	383, 455, 525
Hin6I	GCGC	2 cut(s)	177, 358
HinP1I	GCGC	2 cut(s)	177, 358
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	227, 371, 663
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	2 cut(s)	519, 542
Hpy188I	TCNGA	6 cut(s)	274, 295, 415, 505, 588, 705
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	519, 542
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	4 cut(s)	28, 36, 109, 124
HpyCH4III	ACNGT	2 cut(s)	267, 766
HpyCH4IV	ACGT	2 cut(s)	649, 707
HpyCH4V	TGCA	5 cut(s)	200, 368, 455, 464, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 389, 461
HpyF3I	CTNAG	1 cut(s)	735
HpySE526I	ACGT	2 cut(s)	649, 707
Hsp92II	CATG	3 cut(s)	383, 455, 525
HspAI	GCGC	2 cut(s)	177, 358
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	2 cut(s)	78, 191
LpnPI	CCDG	9 cut(s)	89, 224, 390, 563, 623, 712, 726, 747, 753
LweI	GCATC	3 cut(s)	187, 309, 355
MaeI	CTAG	2 cut(s)	459, 672
MaeII	ACGT	2 cut(s)	649, 707
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	429
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	1 cut(s)	427
MboII	GAAGA	7 cut(s)	103, 124, 133, 151, 272, 539, 626
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	715
MluCI	AATT	4 cut(s)	83, 444, 479, 565
MluNI	TGGCCA	1 cut(s)	715
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	9 cut(s)	43, 151, 225, 312, 385, 394, 478, 588, 673
Mox20I	TGGCCA	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	715
MseI	TTAA	2 cut(s)	69, 342
Msp20I	TGGCCA	1 cut(s)	715
MspR9I	CCNGG	1 cut(s)	741
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	3 cut(s)	22, 389, 461
NdeII	GATC	1 cut(s)	427
NheI	GCTAGC	1 cut(s)	671
NlaIII	CATG	3 cut(s)	383, 455, 525
NlaIV	GGNNCC	2 cut(s)	212, 213
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	2 cut(s)	383, 525
PceI	AGGCCT	1 cut(s)	53
PciI	ACATGT	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	227, 663
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PscI	ACATGT	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	2 cut(s)	212, 213
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	3 cut(s)	211, 212, 505
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	2 cut(s)	499, 697
RsaNI	GTAC	2 cut(s)	498, 696
SaqAI	TTAA	2 cut(s)	69, 342
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	3 cut(s)	211, 212, 505
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	8 cut(s)	75, 460, 516, 580, 652, 673, 684, 710
SfaNI	GCATC	3 cut(s)	187, 309, 355
SinI	GGWCC	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	4 cut(s)	83, 444, 479, 565
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	194, 750
SspMI	CTAG	2 cut(s)	459, 672
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	739
TaaI	ACNGT	2 cut(s)	267, 766
TaiI	ACGT	2 cut(s)	652, 710
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	83, 444, 479, 565
TatI	WGTACW	2 cut(s)	497, 695
TfiI	GAWTC	2 cut(s)	227, 663
Tru1I	TTAA	2 cut(s)	69, 342
Tru9I	TTAA	2 cut(s)	69, 342
TscAI	CASTG	3 cut(s)	45, 367, 731
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	440, 627
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	3 cut(s)	45, 367, 731
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	2 cut(s)	383, 525
XcmI	CCANNNNNNNNNTGG	2 cut(s)	557, 723
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	2 cut(s)	459, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.