Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002286

Physical Location & Seq

Genomic Coordinates Reverse (-)

64852637 .. 64858574

Gene Structure 5938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGGCGGAGGAGAAGCCTGAAGTGCTGGACGCGGTGCTGAAGGAAACGGTTGATCTGGAGAACATACCCATTGAGGAGGTGTTTGAGAATCTGAGATGTAGCAAAGAGGGTCTCAGCAGTGAGGCTGCTGAGGAAAGATTAACCATTTTTGGGCATAACAAGCTTGAGGAAAAGCAGGAGAGCAAGTTTATCAAGTTTCTGGGGTTTATGTGGAATCCTCTCTCATGGGTTATGGAAGCTGCTGCTATAATGGCCATTGCGCTTGCAAATGGAGGAGTTCTTCGAGATGGAAGGTGGAACGAGCAAGATGCTGCTCTCCTAGTACCGGGTGACATAATTAGTATCAAACTTGGTGACATCGTTCCAGCTGATGCACGGCTACTTGAAGGGGATCCATTGAAAATTGATCAGTCTGCACTTACTGGCGAGTCTCTTCCTGTGACAAAAGGCCCCGGGGATGGTGTGTACTCTGGTTCAACTTGCAAACAAGGAGAGATTGAAGCAGTGGTCATTGCCACCGGAGTGCATACCTTCTTTGGGAAGGCTGCTCACCTCGTTGATAGCACTAACCAAGTGGGCCACTTCCAAAAGGTCTTAACTGCAATAGGGAATTTCTGCATATGCTCTATTGCTGTGGGTATGGTAATAGAGATAATTGTCATGTACCCGATTCAAGACCGAGAGTATCGTCCTGGAATTGACAATCTTCTTGTGCTTCTCATTGGTGGAATTCCAATTGCAATGCCCACAGTTCTGTCCGTGACAATGGCAATTGGGTCTCATAGATTAGCACAGCAGGGAGCTATCACAAAGAGAATGACAGCAATTGAAGAGATGGCGGGCATGGATGTGCTTTGCAGTGATAAAACTGGAACTCTAACACTGAACAAGCTTACAGTTGATAAAAATCTTATAGAGGTTTTTGCAAAAGGAGTGGATCCGGATACTGTTGTTCTGATGGCAGCTCGAGCTTCCAGGACAGAGAATCAAGATGCAATAGATACTGCTATAGTTGGGATGCTGGCTGATCCGAAGGAGGCGCGTGCTGGCATTCAAGAAATACACTTCCTTCCTTTCAATCCTACTGATAAGCGAACTGCATTGACTTATATTGACCGTGATGGCAAAATGCATAGAGTTAGCAAAGGTGCACCGGAGCAGATTCTACATCTCGCCCACAATAAGTCGGACATCGAGCGTAGAGCTCATGCTGTGATTGACAAGTTTGCTGAGCGAGGGTTACGGTCTCTTGCTGTAGCATACCAGGAGGTTCCAGAAGGAATCAAAGAGGGTGCTGGAGGCCCATGGCAATTTATTGGTCTAATGCCACTTTTTGACCCACCTAGGCATGACAGTGCAGAGACAATACGGAGGGCTTTAAATCTTGGAGTAAATGTGAAAATGATTACAGGTGATCAACTGGCCATAGGAAAGGAGACCGGACGTCGTTTGGGAATGGGAACCAATATGTATCCTTCATCTGCTTTACTAGGACAGGACAAGGATGAATCGATTGCGGCTTTACCCATTGATGATCTGATAGAAAAAGCCGATGGCTTTGCTGGTGTTTTCCCAGAGCACAAATACGAGATTGTAAAACGCTTGCAAGCAAGGAAACATATCTGTGGAATGACCGGTGATGGAGTTAATGATGCTCCTGCCCTAAAAAAAGCCGATATTGGTATTGCTGTTGCTGATGCAACAGATGCAGCCCGTAGTGCTTCTGATATTGTGCTAACTGAACCTGGCCTGAGTGTTATCATTAGTGCTGTTTTGACTAGTCGGGCAATCTTCCAGAGGATGAAAAATTACACAATATATGCTGTTTCCATCACAATTCGTATTGTGATGGGTTTCATGTTGCTGGCCCTCATATGGAAGTTCGACTTTCCACCTTTCATGGTGCTTATTATTGCAATCCTCAATGATGGTACTATCATGACGATATCAAAGGATAGGGTTAAACCATCTCCTCTGCCAGATAGCTGGAAGCTGTCGGAGATTTTTGCAACTGGAATTGTGCTCGGTACCTACTTGGCAATAATGACTGTGATATTCTTTTGGGCAGCATACAAAACAGACTTCTTCCCAAGAATATTTGGGGTATCAACCCTTGAGAAGACAGCTCATGATGACTTTCGGAAACTTGCCTCTGCTATATATCTACAAGTGAGCATCATTAGTCAGGCCCTCATTTTTGTTACACGCTCTCGAAGTTGGTCCTTTGTTGAGCGGCCTGGAATGTTGCTTGTTGTGGCTTTCCTGATAGCCCAGCTGATTGCCACCTTGATAGCAGTGTATGCTAACTGGGAGTTTGCTGCAATCGAAGGGATTGGATGGGGTTGGGCTGGGGTGATCTGGCTCTATAACATCATCTTCTATGTCCCTCTGGATATCATAAAGTTCATGATACGCTATGCTCTGAGCGGGAAGGCTTGGGATCTTCTCATTGAGCAAAGGATTGCTTTCACAAGGCAAAAAGACTTTGGAAAGGAACAGCGTGAGCTTCAATGGGCACATGCACAAAGAACACTGCATGGTTTGCAACCACCAGATACCAAGATGTTTACTGAAAGAACACATTTCACAGAACTCAATCAGATGGCTGAAGAAGCCAAAAGAAGAGCTGAAATTGCAAGGTTGAGAGAACTGCATACACTAAAAGGTCACGTAGAGTCAGTGGTGAGATTGAAGGGTCTCGACATCGACACAATTCAGCAAGCATACACAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

911

Amino Acids

100.59

Weight (kDa)

5.9

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	21 - 84	4.7e-15	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	93 - 186	1.1e-28	P-type ATPase actuator domain
Hydrolase	PF00702	282 - 559	1.8e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47950 AT3G47950 AT5G62670
fragaria_vesca	FvH4_5g15700 FvH4_5g15700 FvH4_5g15700 FvH4_5g15700 FvH4_6g49360
malus_domestica	MD06G1186400.v1.1 MD14G1192600.v1.1 MD17G1046600.v1.1
prunus_persica	Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.5G185000_v2.0.a1
pyrus_communis	pycom06g16560 pycom06g16570 pycom14g16020 pycom17g04150
rosa_chinensis	RchiOBHm_Chr2g0169231 RchiOBHm_Chr7g0180411
rosa_laevigata	RLG00000005268 RLG00000021844
rosa_multiflora	Rmu_co8446409.1_g000001 Rmu_sc0003526.1_g000005 Rmu_ssc0000440.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082330 Rroxscaffold_3G00272910
rosa_rugosa	Rorug02G0538400 Rorug06G0432800 Rorug06G0432900 Rorug06G0432900
rosa_samantha	Rh2AG609900 Rh2BG622800 Rh2CG591300 Rh7AG033500 Rh7BG033500 Rh7CG035400 Rh7DG033900
rosa_wichuraiana	Rw2G050570 Rw7G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1447
Acc65I	GGTACC	1 cut(s)	2027
AccB1I	GGYRCC	1 cut(s)	2027
AccBSI	CCGCTC	2 cut(s)	2233, 2427
AccII	CGCG	2 cut(s)	32, 1042
AccIII	TCCGGA	1 cut(s)	940
AciI	CCGC	6 cut(s)	5, 32, 839, 1517, 2233, 2427
AclWI	GGATC	6 cut(s)	386, 399, 932, 945, 1022, 2448
AcoI	YGGCCR	2 cut(s)	252, 1422
AcsI	RAATTY	2 cut(s)	610, 729
AcuI	CTGAAG	3 cut(s)	39, 59, 2628
AcyI	GRCGYC	1 cut(s)	1444
AfaI	GTAC	5 cut(s)	324, 467, 665, 1933, 2029
AfiI	CCNNNNNNNGG	5 cut(s)	150, 325, 458, 537, 1875
AgeI	ACCGGT	1 cut(s)	1634
AhdI	GACNNNNNGTC	1 cut(s)	1443
AhlI	ACTAGT	1 cut(s)	1778
AjnI	CCWGG	5 cut(s)	691, 974, 1263, 1744, 2236
AleI	CACNNNNGTG	1 cut(s)	521
Alw21I	GWGCWC	4 cut(s)	1153, 1207, 1581, 2025
Alw26I	GTCTC	7 cut(s)	116, 435, 783, 1251, 1355, 1430, 2702
Alw44I	GTGCAC	1 cut(s)	1149
AlwI	GGATC	6 cut(s)	386, 399, 932, 945, 1022, 2448
Ama87I	CYCGRG	2 cut(s)	452, 966
Aor13HI	TCCGGA	1 cut(s)	940
AoxI	GGCC	9 cut(s)	252, 448, 577, 1300, 1422, 1747, 1866, 2187, 2234
ApaLI	GTGCAC	1 cut(s)	1149
ApeKI	GCWGC	9 cut(s)	125, 239, 242, 311, 545, 962, 1709, 2066, 2318
ApoI	RAATTY	2 cut(s)	610, 729
AsiGI	ACCGGT	1 cut(s)	1634
Asp718I	GGTACC	1 cut(s)	2027
AspA2I	CCTAGG	1 cut(s)	1343
AspLEI	GCGC	2 cut(s)	262, 1042
AspS9I	GGNCC	6 cut(s)	449, 577, 1301, 1867, 2188, 2220
AsuC2I	CCSGG	3 cut(s)	327, 453, 454
AsuHPI	GGTGA	7 cut(s)	341, 365, 542, 1424, 1649, 2365, 2695
AvaI	CYCGRG	2 cut(s)	452, 966
AvaII	GGWCC	1 cut(s)	2220
AvrII	CCTAGG	1 cut(s)	1343
BaeGI	GKGCMC	2 cut(s)	1153, 2518
BaeI	ACNNNNGTAYC	2 cut(s)	936, 969
BalI	TGGCCA	2 cut(s)	254, 1424
BamHI	GGATCC	2 cut(s)	391, 937
BanI	GGYRCC	1 cut(s)	2027
BanII	GRGCYC	1 cut(s)	1207
BbsI	GAAGAC	1 cut(s)	2126
Bbv12I	GWGCWC	4 cut(s)	1153, 1207, 1581, 2025
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	9 cut(s)	112, 226, 229, 298, 532, 974, 1721, 2078, 2305
BceAI	ACGGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	4 cut(s)	290, 324, 1541, 1575
BciT130I	CCWGG	5 cut(s)	693, 976, 1265, 1746, 2238
BciVI	GTATCC	2 cut(s)	937, 1482
BclI	TGATCA	2 cut(s)	406, 1414
BcnI	CCSGG	3 cut(s)	327, 453, 454
BcoDI	GTCTC	7 cut(s)	116, 435, 783, 1251, 1355, 1430, 2702
BcuI	ACTAGT	1 cut(s)	1778
BfaI	CTAG	5 cut(s)	320, 1344, 1490, 1779, 2734
BfmI	CTRYAG	2 cut(s)	1008, 1254
BfuI	GTATCC	2 cut(s)	937, 1482
BlnI	CCTAGG	1 cut(s)	1343
BlpI	GCTNAGC	1 cut(s)	1230
Bme1390I	CCNGG	8 cut(s)	327, 453, 454, 693, 976, 1265, 1746, 2238
Bme18I	GGWCC	1 cut(s)	2220
BmeRI	GACNNNNNGTC	1 cut(s)	1443
BmeT110I	CYCGRG	2 cut(s)	452, 966
BmgT120I	GGNCC	6 cut(s)	449, 577, 1301, 1867, 2188, 2220
BmiI	GGNNCC	6 cut(s)	393, 451, 939, 1272, 1462, 2029
BmrFI	CCNGG	8 cut(s)	327, 453, 454, 693, 976, 1265, 1746, 2238
BmrI	ACTGGG	1 cut(s)	2317
BmsI	GCATC	8 cut(s)	298, 361, 982, 1008, 1642, 1687, 1696, 2184
BmuI	ACTGGG	1 cut(s)	2317
BpiI	GAAGAC	1 cut(s)	2126
BpmI	CTGGAG	2 cut(s)	77, 1317
Bpu10I	CCTNAGC	1 cut(s)	129
Bpu1102I	GCTNAGC	1 cut(s)	1230
BpuEI	CTTGAG	2 cut(s)	185, 2135
BpuMI	CCSGG	3 cut(s)	327, 453, 454
Bsa29I	ATCGAT	1 cut(s)	1511
BsaAI	YACGTR	1 cut(s)	2671
BsaBI	GATNNNNATC	1 cut(s)	906
BsaHI	GRCGYC	1 cut(s)	1444
BsaI	GGTCTC	5 cut(s)	116, 783, 1251, 1430, 2702
BsaJI	CCNNGG	5 cut(s)	451, 452, 453, 1304, 1343
BsaWI	WCCGGW	5 cut(s)	518, 940, 1153, 1439, 1634
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 1380, 1410
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 325, 458, 537, 1875
Bse118I	RCCGGY	1 cut(s)	1634
Bse1I	ACTGG	5 cut(s)	427, 874, 1425, 2017, 2312
Bse3DI	GCAATG	3 cut(s)	255, 510, 747
Bse8I	GATNNNNATC	1 cut(s)	906
BseAI	TCCGGA	1 cut(s)	940
BseBI	CCWGG	5 cut(s)	693, 976, 1265, 1746, 2238
BseCI	ATCGAT	1 cut(s)	1511
BseDI	CCNNGG	5 cut(s)	451, 452, 453, 1304, 1343
BseGI	GGATG	6 cut(s)	463, 853, 1023, 1510, 1806, 2342
BseJI	GATNNNNATC	1 cut(s)	906
BseLI	CCNNNNNNNGG	5 cut(s)	150, 325, 458, 537, 1875
BseMI	GCAATG	3 cut(s)	255, 510, 747
BseMII	CTCAG	6 cut(s)	83, 120, 127, 1221, 1742, 2414
BseNI	ACTGG	5 cut(s)	427, 874, 1425, 2017, 2312
BseRI	GAGGAG	4 cut(s)	23, 89, 288, 1962
BseSI	GKGCMC	2 cut(s)	1153, 2518
BseXI	GCAGC	9 cut(s)	112, 226, 229, 298, 532, 974, 1721, 2078, 2305
BseYI	CCCAGC	2 cut(s)	2271, 2348
BsgI	GTGCAG	2 cut(s)	399, 1377
Bsh1236I	CGCG	2 cut(s)	32, 1042
BshFI	GGCC	9 cut(s)	254, 450, 579, 1302, 1424, 1749, 1868, 2189, 2236
BshNI	GGYRCC	1 cut(s)	2027
BshTI	ACCGGT	1 cut(s)	1634
BshVI	ATCGAT	1 cut(s)	1511
BsiHKAI	GWGCWC	4 cut(s)	1153, 1207, 1581, 2025
BsiHKCI	CYCGRG	2 cut(s)	452, 966
BsiSI	CCGG	7 cut(s)	326, 453, 519, 941, 1154, 1440, 1635
BslFI	GGGAC	1 cut(s)	2369
BslI	CCNNNNNNNGG	5 cut(s)	150, 325, 458, 537, 1875
BsmAI	GTCTC	7 cut(s)	116, 435, 783, 1251, 1355, 1430, 2702
BsmFI	GGGAC	1 cut(s)	2369
BsmI	GAATGC	1 cut(s)	1050
BsnI	GGCC	9 cut(s)	254, 450, 579, 1302, 1424, 1749, 1868, 2189, 2236
Bso31I	GGTCTC	5 cut(s)	116, 783, 1251, 1430, 2702
BsoBI	CYCGRG	2 cut(s)	452, 966
Bsp1286I	GDGCHC	5 cut(s)	1153, 1207, 1581, 2025, 2518
Bsp13I	TCCGGA	1 cut(s)	940
Bsp143I	GATC	9 cut(s)	52, 391, 406, 937, 1027, 1414, 1534, 2355, 2440
Bsp1720I	GCTNAGC	1 cut(s)	1230
Bsp19I	CCATGG	1 cut(s)	1304
BspACI	CCGC	6 cut(s)	5, 32, 839, 1517, 2233, 2427
BspANI	GGCC	9 cut(s)	254, 450, 579, 1302, 1424, 1749, 1868, 2189, 2236
BspCNI	CTCAG	6 cut(s)	84, 121, 126, 1222, 1743, 2415
BspDI	ATCGAT	1 cut(s)	1511
BspEI	TCCGGA	1 cut(s)	940
BspFNI	CGCG	2 cut(s)	32, 1042
BspHI	TCATGA	3 cut(s)	1938, 2128, 2406
BspLI	GGNNCC	6 cut(s)	393, 451, 939, 1272, 1462, 2029
BspPI	GGATC	6 cut(s)	386, 399, 932, 945, 1022, 2448
BspQI	GCTCTTC	1 cut(s)	2617
BspT107I	GGYRCC	1 cut(s)	2027
BspTNI	GGTCTC	5 cut(s)	116, 783, 1251, 1430, 2702
BsrBI	CCGCTC	2 cut(s)	2233, 2427
BsrDI	GCAATG	3 cut(s)	255, 510, 747
BsrFI	RCCGGY	1 cut(s)	1634
BsrI	ACTGG	5 cut(s)	427, 874, 1425, 2017, 2312
BssAI	RCCGGY	1 cut(s)	1634
BssECI	CCNNGG	5 cut(s)	451, 452, 453, 1304, 1343
BssMI	GATC	9 cut(s)	52, 391, 406, 937, 1027, 1414, 1534, 2355, 2440
BssNI	GRCGYC	1 cut(s)	1444
BssT1I	CCWWGG	2 cut(s)	1304, 1343
Bst2UI	CCWGG	5 cut(s)	693, 976, 1265, 1746, 2238
Bst4CI	ACNGT	9 cut(s)	49, 751, 898, 949, 1118, 1245, 1355, 2050, 2731
Bst6I	CTCTTC	3 cut(s)	438, 825, 2617
BstACI	GRCGYC	1 cut(s)	1444
BstAPI	GCANNNNNTGC	3 cut(s)	1706, 2300, 2542
BstBAI	YACGTR	1 cut(s)	2671
BstC8I	GCNNGC	9 cut(s)	264, 841, 1023, 1044, 1048, 1604, 1608, 1866, 2721
BstDEI	CTNAG	6 cut(s)	92, 113, 129, 1230, 1751, 2423
BstDSI	CCRYGG	1 cut(s)	1304
BstF5I	GGATG	6 cut(s)	463, 853, 1023, 1510, 1806, 2342
BstFNI	CGCG	2 cut(s)	32, 1042
BstHHI	GCGC	2 cut(s)	262, 1042
BstKTI	GATC	9 cut(s)	55, 394, 409, 940, 1030, 1417, 1537, 2358, 2443
BstMAI	GTCTC	7 cut(s)	116, 435, 783, 1251, 1355, 1430, 2702
BstMBI	GATC	9 cut(s)	52, 391, 406, 937, 1027, 1414, 1534, 2355, 2440
BstNI	CCWGG	5 cut(s)	693, 976, 1265, 1746, 2238
BstNSI	RCATGY	1 cut(s)	2522
BstSCI	CCNGG	8 cut(s)	325, 451, 452, 691, 974, 1263, 1744, 2236
BstSFI	CTRYAG	2 cut(s)	1008, 1254
BstSLI	GKGCMC	2 cut(s)	1153, 2518
BstUI	CGCG	2 cut(s)	32, 1042
BstV1I	GCAGC	9 cut(s)	112, 226, 229, 298, 532, 974, 1721, 2078, 2305
BstV2I	GAAGAC	1 cut(s)	2126
BstX2I	RGATCY	3 cut(s)	391, 937, 2440
BstXI	CCANNNNNNTGG	1 cut(s)	1986
BstYI	RGATCY	3 cut(s)	391, 937, 2440
Bsu15I	ATCGAT	1 cut(s)	1511
BsuI	GTATCC	2 cut(s)	937, 1482
BsuRI	GGCC	9 cut(s)	254, 450, 579, 1302, 1424, 1749, 1868, 2189, 2236
BsuTUI	ATCGAT	1 cut(s)	1511
BtgI	CCRYGG	1 cut(s)	1304
BtsCI	GGATG	6 cut(s)	463, 853, 1023, 1510, 1806, 2342
BtsI	GCAGTG	5 cut(s)	124, 510, 865, 2301, 2531
BtsIMutI	CAGTG	8 cut(s)	124, 510, 865, 881, 1360, 2301, 2531, 2685
Cac8I	GCNNGC	9 cut(s)	264, 841, 1023, 1044, 1048, 1604, 1608, 1866, 2721
CciI	TCATGA	3 cut(s)	1938, 2128, 2406
CfoI	GCGC	2 cut(s)	262, 1042
Cfr10I	RCCGGY	1 cut(s)	1634
Cfr13I	GGNCC	6 cut(s)	449, 577, 1301, 1867, 2188, 2220
Cfr9I	CCCGGG	1 cut(s)	452
ClaI	ATCGAT	1 cut(s)	1511
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	5 cut(s)	323, 466, 664, 1932, 2028
CspAI	ACCGGT	1 cut(s)	1634
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviQI	GTAC	5 cut(s)	323, 466, 664, 1932, 2028
DdeI	CTNAG	6 cut(s)	92, 113, 129, 1230, 1751, 2423
DpnI	GATC	9 cut(s)	54, 393, 408, 939, 1029, 1416, 1536, 2357, 2442
DpnII	GATC	9 cut(s)	52, 391, 406, 937, 1027, 1414, 1534, 2355, 2440
DraI	TTTAAA	1 cut(s)	1380
DriI	GACNNNNNGTC	1 cut(s)	1443
EaeI	YGGCCR	2 cut(s)	252, 1422
Eam1104I	CTCTTC	3 cut(s)	438, 825, 2617
Eam1105I	GACNNNNNGTC	1 cut(s)	1443
EarI	CTCTTC	3 cut(s)	438, 825, 2617
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	1205
Eco130I	CCWWGG	2 cut(s)	1304, 1343
Eco24I	GRGCYC	1 cut(s)	1207
Eco31I	GGTCTC	5 cut(s)	116, 783, 1251, 1430, 2702
Eco32I	GATATC	2 cut(s)	1947, 2395
Eco47I	GGWCC	1 cut(s)	2220
Eco53kI	GAGCTC	1 cut(s)	1205
Eco57I	CTGAAG	3 cut(s)	39, 59, 2628
Eco88I	CYCGRG	2 cut(s)	452, 966
EcoICRI	GAGCTC	1 cut(s)	1205
EcoO109I	RGGNCCY	2 cut(s)	449, 2188
EcoRI	GAATTC	1 cut(s)	729
EcoRII	CCWGG	5 cut(s)	691, 974, 1263, 1744, 2236
EcoRV	GATATC	2 cut(s)	1947, 2395
EcoT14I	CCWWGG	2 cut(s)	1304, 1343
EcoT22I	ATGCAT	1 cut(s)	1134
EcoT38I	GRGCYC	1 cut(s)	1207
ErhI	CCWWGG	2 cut(s)	1304, 1343
FalI	AAGNNNNNCTT	4 cut(s)	1871, 1903, 2449, 2481
FaqI	GGGAC	1 cut(s)	2369
FauI	CCCGC	2 cut(s)	832, 2420
FauNDI	CATATG	2 cut(s)	620, 1874
FbaI	TGATCA	2 cut(s)	406, 1414
FokI	GGATG	6 cut(s)	470, 860, 1030, 1517, 1813, 2349
FriOI	GRGCYC	1 cut(s)	1207
FspBI	CTAG	5 cut(s)	320, 1344, 1490, 1779, 2734
GlaI	GCGC	2 cut(s)	261, 1041
GsaI	CCCAGC	2 cut(s)	2275, 2352
GsuI	CTGGAG	2 cut(s)	77, 1317
HaeIII	GGCC	9 cut(s)	254, 450, 579, 1302, 1424, 1749, 1868, 2189, 2236
HapII	CCGG	7 cut(s)	326, 453, 519, 941, 1154, 1440, 1635
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	2 cut(s)	262, 1042
Hin1I	GRCGYC	1 cut(s)	1444
Hin6I	GCGC	2 cut(s)	260, 1040
HinP1I	GCGC	2 cut(s)	260, 1040
HindIII	AAGCTT	2 cut(s)	161, 890
HinfI	GANTC	9 cut(s)	88, 214, 428, 670, 985, 1162, 1281, 1508, 2675
HpaII	CCGG	7 cut(s)	326, 453, 519, 941, 1154, 1440, 1635
HphI	GGTGA	7 cut(s)	341, 365, 542, 1424, 1649, 2365, 2695
Hpy166II	GTNNAC	3 cut(s)	466, 1151, 2568
Hpy8I	GTNNAC	3 cut(s)	466, 1151, 2568
Hpy99I	CGWCG	1 cut(s)	1449
HpyCH4III	ACNGT	9 cut(s)	49, 751, 898, 949, 1118, 1245, 1355, 2050, 2731
HpyCH4IV	ACGT	2 cut(s)	1444, 2670
HpyF3I	CTNAG	6 cut(s)	92, 113, 129, 1230, 1751, 2423
HpySE526I	ACGT	2 cut(s)	1444, 2670
Hsp92I	GRCGYC	1 cut(s)	1444
HspAI	GCGC	2 cut(s)	260, 1040
Kpn2I	TCCGGA	1 cut(s)	940
KpnI	GGTACC	1 cut(s)	2031
Ksp22I	TGATCA	2 cut(s)	406, 1414
Kzo9I	GATC	9 cut(s)	52, 391, 406, 937, 1027, 1414, 1534, 2355, 2440
LguI	GCTCTTC	1 cut(s)	2617
LmnI	GCTCC	3 cut(s)	800, 1156, 1660
Lsp1109I	GCAGC	9 cut(s)	112, 226, 229, 298, 532, 974, 1721, 2078, 2305
LweI	GCATC	8 cut(s)	298, 361, 982, 1008, 1642, 1687, 1696, 2184
MaeI	CTAG	5 cut(s)	320, 1344, 1490, 1779, 2734
MaeII	ACGT	2 cut(s)	1444, 2670
MaeIII	GTNAC	7 cut(s)	329, 353, 439, 760, 1239, 2200, 2666
MalI	GATC	9 cut(s)	54, 393, 408, 939, 1029, 1416, 1536, 2357, 2442
MbiI	CCGCTC	2 cut(s)	2233, 2427
MboI	GATC	9 cut(s)	52, 391, 406, 937, 1027, 1414, 1534, 2355, 2440
MfeI	CAATTG	3 cut(s)	735, 771, 825
MflI	RGATCY	3 cut(s)	391, 937, 2440
MhlI	GDGCHC	5 cut(s)	1153, 1207, 1581, 2025, 2518
MlsI	TGGCCA	2 cut(s)	254, 1424
MluNI	TGGCCA	2 cut(s)	254, 1424
MlyI	GAGTC	2 cut(s)	437, 2684
MmeI	TCCRAC	2 cut(s)	1167, 1977
Mox20I	TGGCCA	2 cut(s)	254, 1424
Mph1103I	ATGCAT	1 cut(s)	1134
MroI	TCCGGA	1 cut(s)	940
MscI	TGGCCA	2 cut(s)	254, 1424
MseI	TTAA	5 cut(s)	140, 596, 1379, 1647, 1962
MslI	CAYNNNNRTG	4 cut(s)	521, 848, 1353, 1623
Msp20I	TGGCCA	2 cut(s)	254, 1424
MspA1I	CMGCKG	2 cut(s)	368, 2275
MspI	CCGG	7 cut(s)	326, 453, 519, 941, 1154, 1440, 1635
MspR9I	CCNGG	8 cut(s)	327, 453, 454, 693, 976, 1265, 1746, 2238
MunI	CAATTG	3 cut(s)	735, 771, 825
Mva1269I	GAATGC	1 cut(s)	1050
MvaI	CCWGG	5 cut(s)	693, 976, 1265, 1746, 2238
MvnI	CGCG	2 cut(s)	32, 1042
NciI	CCSGG	3 cut(s)	327, 453, 454
NcoI	CCATGG	1 cut(s)	1304
NdeI	CATATG	2 cut(s)	620, 1874
NdeII	GATC	9 cut(s)	52, 391, 406, 937, 1027, 1414, 1534, 2355, 2440
NlaIV	GGNNCC	6 cut(s)	393, 451, 939, 1272, 1462, 2029
NmuCI	GTSAC	5 cut(s)	329, 353, 439, 760, 2666
NsiI	ATGCAT	1 cut(s)	1134
NspI	RCATGY	1 cut(s)	2522
OliI	CACNNNNGTG	1 cut(s)	521
PaeR7I	CTCGAG	1 cut(s)	966
PagI	TCATGA	3 cut(s)	1938, 2128, 2406
PciSI	GCTCTTC	1 cut(s)	2617
PctI	GAATGC	1 cut(s)	1050
PfeI	GAWTC	7 cut(s)	88, 214, 670, 985, 1162, 1281, 1508
PfoI	TCCNGGA	2 cut(s)	691, 974
PinAI	ACCGGT	1 cut(s)	1634
PleI	GAGTC	2 cut(s)	436, 2683
PpsI	GAGTC	2 cut(s)	436, 2683
Ppu21I	YACGTR	1 cut(s)	2671
Psp124BI	GAGCTC	1 cut(s)	1207
Psp6I	CCWGG	5 cut(s)	691, 974, 1263, 1744, 2236
PspFI	CCCAGC	2 cut(s)	2271, 2348
PspGI	CCWGG	5 cut(s)	691, 974, 1263, 1744, 2236
PspN4I	GGNNCC	6 cut(s)	393, 451, 939, 1272, 1462, 2029
PspPI	GGNCC	6 cut(s)	449, 577, 1301, 1867, 2188, 2220
PspXI	VCTCGAGB	1 cut(s)	966
PsuI	RGATCY	3 cut(s)	391, 937, 2440
PvuII	CAGCTG	2 cut(s)	368, 2275
RsaI	GTAC	5 cut(s)	324, 467, 665, 1933, 2029
RsaNI	GTAC	5 cut(s)	323, 466, 664, 1932, 2028
RseI	CAYNNNNRTG	4 cut(s)	521, 848, 1353, 1623
SacI	GAGCTC	1 cut(s)	1207
SapI	GCTCTTC	1 cut(s)	2617
SaqAI	TTAA	5 cut(s)	140, 596, 1379, 1647, 1962
Sau3AI	GATC	9 cut(s)	52, 391, 406, 937, 1027, 1414, 1534, 2355, 2440
Sau96I	GGNCC	6 cut(s)	449, 577, 1301, 1867, 2188, 2220
SchI	GAGTC	2 cut(s)	437, 2684
ScrFI	CCNGG	8 cut(s)	327, 453, 454, 693, 976, 1265, 1746, 2238
SduI	GDGCHC	5 cut(s)	1153, 1207, 1581, 2025, 2518
SfaNI	GCATC	8 cut(s)	298, 361, 982, 1008, 1642, 1687, 1696, 2184
SfcI	CTRYAG	2 cut(s)	1008, 1254
Sfr274I	CTCGAG	1 cut(s)	966
SinI	GGWCC	1 cut(s)	2220
SlaI	CTCGAG	1 cut(s)	966
SmaI	CCCGGG	1 cut(s)	454
SmiMI	CAYNNNNRTG	4 cut(s)	521, 848, 1353, 1623
SmlI	CTYRAG	3 cut(s)	164, 966, 2114
SmoI	CTYRAG	3 cut(s)	164, 966, 2114
SpeI	ACTAGT	1 cut(s)	1778
SsiI	CCGC	6 cut(s)	5, 32, 839, 1517, 2233, 2427
SspI	AATATT	1 cut(s)	2097
SspMI	CTAG	5 cut(s)	320, 1344, 1490, 1779, 2734
SstI	GAGCTC	1 cut(s)	1207
StyD4I	CCNGG	8 cut(s)	325, 451, 452, 691, 974, 1263, 1744, 2236
StyI	CCWWGG	2 cut(s)	1304, 1343
TaaI	ACNGT	9 cut(s)	49, 751, 898, 949, 1118, 1245, 1355, 2050, 2731
TaiI	ACGT	2 cut(s)	1447, 2673
TaqI	TCGA	9 cut(s)	283, 967, 1194, 1511, 1884, 2212, 2325, 2700, 2706
TaqII	GACCGA	1 cut(s)	693
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	1520, 2236
TfiI	GAWTC	7 cut(s)	88, 214, 670, 985, 1162, 1281, 1508
Tru1I	TTAA	5 cut(s)	140, 596, 1379, 1647, 1962
Tru9I	TTAA	5 cut(s)	140, 596, 1379, 1647, 1962
TscAI	CASTG	8 cut(s)	124, 510, 865, 888, 1360, 2301, 2538, 2685
TseFI	GTSAC	5 cut(s)	329, 353, 439, 760, 2666
TseI	GCWGC	9 cut(s)	125, 239, 242, 311, 545, 962, 1709, 2066, 2318
Tsp45I	GTSAC	5 cut(s)	329, 353, 439, 760, 2666
TspDTI	ATGAA	6 cut(s)	1467, 1521, 1817, 1846, 1888, 2395
TspGWI	ACGGA	2 cut(s)	748, 1384
TspMI	CCCGGG	1 cut(s)	452
TspRI	CASTG	8 cut(s)	124, 510, 865, 888, 1360, 2301, 2538, 2685
VneI	GTGCAC	1 cut(s)	1149
VpaK11BI	GGWCC	1 cut(s)	2220
XapI	RAATTY	2 cut(s)	610, 729
XceI	RCATGY	1 cut(s)	2522
XhoI	CTCGAG	1 cut(s)	966
XmaI	CCCGGG	1 cut(s)	452
XmaJI	CCTAGG	1 cut(s)	1343
XspI	CTAG	5 cut(s)	320, 1344, 1490, 1779, 2734
ZraI	GACGTC	1 cut(s)	1445
Zsp2I	ATGCAT	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.