Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446409.1

Orthogroup ID

OG0002286

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1648

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446409.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1057 bp

ctcgcaatagcgaaggagacaggacgccgtcttggtatgggaacaaacatgtacccctcatcagctcttttgggacagaaaaaggatgagtcacttgctggtttgccagttgatgagcttattgaaaaagctgatggatttgctggtgtttttcctgagcacaagtacgagattgtgaagcgtttgcaagcaagaggacatatatgtgggatgactggtgatggagttaatgatgctcctgctcttaaaaaagctgatattggcatagctgttgctgatgcaactgatgcagctcgaagtgcttctgacattgtactcacagaacctggccttagtgtcatcataagcgctgtactaactagtcgagcgatattccagagaatgaaaaattacacgatatatgctgtttccattacaatccgtattgtgcttggtttcatgttactggcactcatatggcacttcgactttccacccttcatggttctgatcattgctatccttaatgatggtactatcatgacaatttcgaaggatagagtgaaaccctctcctctgccagacagttggaaactagcagagatctttaccaccggtattatccttggtagttacctagcggtgatgacagtcattttcttttgggcagcatacgaaacagacttcttccctcgtaaatttggggtttcaagccttcagaaaaagcatatcgagcataacgatagctacaggaagcttgccgctgcagtgtacctgcaagtgagtacaatcagtcaggctctcatattcgtcacacgagcgcgtagttggtcttttgtggagcgtcctggtctattacttgtatcagcttttgttattgctcagctgattgctacactcatggctgtctatgccgattggagtttcgcggcgataaagggaattgggtggggttgggctggtgttatttggttatataacctcgtcttctatcttccacttgatattatcaagttcatcatccgatatgcactgagtgggagagcttgggatctcgtatttgagcagagggtatgta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

352

Amino Acids

39.0

Weight (kDa)

9.04

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47950 AT3G47950 AT5G62670
fragaria_vesca	FvH4_5g15700 FvH4_5g15700 FvH4_5g15700 FvH4_5g15700 FvH4_6g49360
malus_domestica	MD06G1186400.v1.1 MD14G1192600.v1.1 MD17G1046600.v1.1
prunus_persica	Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.3G272500_v2.0.a1 Prupe.5G185000_v2.0.a1
pyrus_communis	pycom06g16560 pycom06g16570 pycom14g16020 pycom17g04150
rosa_chinensis	RchiOBHm_Chr2g0169231 RchiOBHm_Chr7g0180411
rosa_laevigata	RLG00000005268 RLG00000021844
rosa_multiflora	Rmu_co8446409.1_g000001 Rmu_sc0003526.1_g000005 Rmu_ssc0000440.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082330 Rroxscaffold_3G00272910
rosa_rugosa	Rorug02G0538400 Rorug06G0432800 Rorug06G0432900 Rorug06G0432900
rosa_samantha	Rh2AG609900 Rh2BG622800 Rh2CG591300 Rh7AG033500 Rh7BG033500 Rh7CG035400 Rh7DG033900
rosa_wichuraiana	Rw2G050570 Rw7G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	762
AccII	CGCG	2 cut(s)	802, 908
AciI	CCGC	3 cut(s)	620, 741, 908
AclWI	GGATC	1 cut(s)	1038
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	1016
AfaI	GTAC	7 cut(s)	53, 167, 315, 354, 514, 752, 766
AfeI	AGCGCT	1 cut(s)	349
AflIII	ACRYGT	1 cut(s)	48
AgeI	ACCGGT	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	125, 690
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	2 cut(s)	325, 826
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	1038
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	3 cut(s)	290, 647, 743
ApoI	RAATTY	1 cut(s)	677
AsiGI	ACCGGT	1 cut(s)	593
Asp700I	GAANNNNTTC	1 cut(s)	301
AspLEI	GCGC	2 cut(s)	350, 802
AsuHPI	GGTGA	2 cut(s)	230, 634
AsuII	TTCGAA	1 cut(s)	530
BauI	CACGAG	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	958
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	302, 659, 730
BccI	CCATC	3 cut(s)	128, 215, 503
BceAI	ACGGC	1 cut(s)	12
BciT130I	CCWGG	2 cut(s)	327, 828
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	3 cut(s)	360, 575, 617
BfmI	CTRYAG	2 cut(s)	727, 744
BfoI	RGCGCY	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	762
BglII	AGATCT	1 cut(s)	582
BisI	GCNGC	5 cut(s)	291, 648, 741, 744, 909
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	5 cut(s)	292, 649, 742, 745, 910
Bme1390I	CCNGG	2 cut(s)	327, 828
BmrFI	CCNGG	2 cut(s)	327, 828
BmsI	GCATC	3 cut(s)	223, 268, 277
BpiI	GAAGAC	1 cut(s)	958
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	604
BsaWI	WCCGGW	1 cut(s)	593
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	3 cut(s)	107, 220, 450
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	327, 828
BseDI	CCNNGG	1 cut(s)	604
BseGI	GGATG	3 cut(s)	91, 216, 999
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	147, 875, 1004
BseNI	ACTGG	3 cut(s)	107, 220, 450
BseRI	GAGGAG	1 cut(s)	543
BseXI	GCAGC	3 cut(s)	302, 659, 730
Bsh1236I	CGCG	2 cut(s)	802, 908
BshFI	GGCC	1 cut(s)	330
BshTI	ACCGGT	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	3 cut(s)	489, 582, 1030
Bsp1720I	GCTNAGC	1 cut(s)	861
BspACI	CCGC	3 cut(s)	620, 741, 908
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	3 cut(s)	148, 874, 1005
BspFNI	CGCG	2 cut(s)	802, 908
BspHI	TCATGA	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	762
BspPI	GGATC	1 cut(s)	1038
BspT104I	TTCGAA	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	3 cut(s)	107, 220, 450
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	604
BssMI	GATC	3 cut(s)	489, 582, 1030
BssNI	GRCGYC	1 cut(s)	25
BssSI	CACGAG	1 cut(s)	795
BssT1I	CCWWGG	1 cut(s)	604
Bst2BI	CACGAG	1 cut(s)	795
Bst2UI	CCWGG	2 cut(s)	327, 828
Bst4CI	ACNGT	2 cut(s)	566, 631
BstACI	GRCGYC	1 cut(s)	25
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	189, 738
BstDEI	CTNAG	4 cut(s)	156, 332, 861, 1013
BstF5I	GGATG	3 cut(s)	91, 216, 999
BstFNI	CGCG	2 cut(s)	802, 908
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	350, 802
BstKTI	GATC	3 cut(s)	492, 585, 1033
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	3 cut(s)	489, 582, 1030
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 299, 712, 890
BstNI	CCWGG	2 cut(s)	327, 828
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	325, 826
BstSFI	CTRYAG	2 cut(s)	727, 744
BstUI	CGCG	2 cut(s)	802, 908
BstV1I	GCAGC	3 cut(s)	302, 659, 730
BstV2I	GAAGAC	1 cut(s)	958
BstX2I	RGATCY	2 cut(s)	582, 1030
BstXI	CCANNNNNNTGG	1 cut(s)	567
BstYI	RGATCY	2 cut(s)	582, 1030
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	91, 216, 999
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	2 cut(s)	753, 1010
BveI	ACCTGC	1 cut(s)	762
Cac8I	GCNNGC	2 cut(s)	189, 738
CaiI	CAGNNNCTG	1 cut(s)	326
CciI	TCATGA	1 cut(s)	519
CfoI	GCGC	2 cut(s)	350, 802
Cfr10I	RCCGGY	1 cut(s)	593
CseI	GACGC	2 cut(s)	33, 812
Csp6I	GTAC	7 cut(s)	52, 166, 314, 353, 513, 751, 765
CspAI	ACCGGT	1 cut(s)	593
CviAII	CATG	5 cut(s)	49, 439, 481, 520, 880
CviQI	GTAC	7 cut(s)	52, 166, 314, 353, 513, 751, 765
DdeI	CTNAG	4 cut(s)	156, 332, 861, 1013
DpnI	GATC	3 cut(s)	491, 584, 1032
DpnII	GATC	3 cut(s)	489, 582, 1030
DraIII	CACNNNGTG	1 cut(s)	1016
Eco130I	CCWWGG	1 cut(s)	604
Eco47III	AGCGCT	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	325, 826
EcoT14I	CCWWGG	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	5 cut(s)	52, 442, 484, 523, 883
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	5 cut(s)	48, 438, 480, 519, 879
FauNDI	CATATG	1 cut(s)	455
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	5 cut(s)	291, 648, 741, 744, 909
FokI	GGATG	3 cut(s)	98, 223, 986
Fsp4HI	GCNGC	5 cut(s)	291, 648, 741, 744, 909
FspBI	CTAG	3 cut(s)	360, 575, 617
GlaI	GCGC	2 cut(s)	349, 801
GluI	GCNGC	5 cut(s)	291, 648, 741, 744, 909
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	2 cut(s)	33, 812
HhaI	GCGC	2 cut(s)	350, 802
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	5 cut(s)	52, 442, 484, 523, 883
Hin6I	GCGC	2 cut(s)	348, 800
HinP1I	GCGC	2 cut(s)	348, 800
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	2 cut(s)	230, 634
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	4 cut(s)	307, 489, 699, 1004
Hpy188III	TCNNGA	3 cut(s)	155, 376, 520
Hpy8I	GTNNAC	1 cut(s)	751
HpyAV	CCTTC	4 cut(s)	7, 487, 526, 704
HpyCH4III	ACNGT	2 cut(s)	566, 631
HpyCH4V	TGCA	6 cut(s)	187, 281, 290, 746, 757, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 299, 712, 890
HpyF3I	CTNAG	4 cut(s)	156, 332, 861, 1013
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	5 cut(s)	52, 442, 484, 523, 883
HspAI	GCGC	2 cut(s)	348, 800
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	489, 582, 1030
LmnI	GCTCC	2 cut(s)	241, 820
Lsp1109I	GCAGC	3 cut(s)	302, 659, 730
LweI	GCATC	3 cut(s)	223, 268, 277
MaeI	CTAG	3 cut(s)	360, 575, 617
MaeIII	GTNAC	4 cut(s)	90, 441, 611, 790
MalI	GATC	3 cut(s)	491, 584, 1032
MboI	GATC	3 cut(s)	489, 582, 1030
MboII	GAAGA	3 cut(s)	658, 958, 965
MflI	RGATCY	2 cut(s)	582, 1030
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	4 cut(s)	388, 525, 677, 921
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	7 cut(s)	67, 188, 559, 564, 681, 971, 1041
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	3 cut(s)	228, 246, 504
MslI	CAYNNNNRTG	2 cut(s)	204, 454
MspA1I	CMGCKG	2 cut(s)	743, 865
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	2 cut(s)	327, 828
MvaI	CCWGG	2 cut(s)	327, 828
MvnI	CGCG	2 cut(s)	802, 908
MwoI	GCNNNNNNNGC	4 cut(s)	287, 299, 712, 890
NdeI	CATATG	1 cut(s)	455
NdeII	GATC	3 cut(s)	489, 582, 1030
NlaIII	CATG	5 cut(s)	52, 442, 484, 523, 883
NmuCI	GTSAC	2 cut(s)	90, 790
NspI	RCATGY	1 cut(s)	52
NspV	TTCGAA	1 cut(s)	530
PagI	TCATGA	1 cut(s)	519
PciI	ACATGT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	593
PkrI	GCNGC	5 cut(s)	292, 649, 742, 745, 910
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	325, 826
PspGI	CCWGG	2 cut(s)	325, 826
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	582, 1030
PsyI	GACNNNGTC	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	865
RsaI	GTAC	7 cut(s)	53, 167, 315, 354, 514, 752, 766
RsaNI	GTAC	7 cut(s)	52, 166, 314, 353, 513, 751, 765
RseI	CAYNNNNRTG	2 cut(s)	204, 454
SaqAI	TTAA	3 cut(s)	228, 246, 504
SatI	GCNGC	5 cut(s)	291, 648, 741, 744, 909
Sau3AI	GATC	3 cut(s)	489, 582, 1030
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	327, 828
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	3 cut(s)	223, 268, 277
SfcI	CTRYAG	2 cut(s)	727, 744
SfuI	TTCGAA	1 cut(s)	530
SmiMI	CAYNNNNRTG	2 cut(s)	204, 454
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	4 cut(s)	388, 525, 677, 921
SsiI	CCGC	3 cut(s)	620, 741, 908
SspMI	CTAG	3 cut(s)	360, 575, 617
StyD4I	CCNGG	2 cut(s)	325, 826
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	2 cut(s)	566, 631
TaqI	TCGA	5 cut(s)	295, 364, 465, 530, 711
TasI	AATT	4 cut(s)	388, 525, 677, 921
TatI	WGTACW	3 cut(s)	313, 352, 764
TauI	GCSGC	2 cut(s)	743, 911
Tru1I	TTAA	3 cut(s)	228, 246, 504
Tru9I	TTAA	3 cut(s)	228, 246, 504
TscAI	CASTG	2 cut(s)	753, 1017
TseFI	GTSAC	2 cut(s)	90, 790
TseI	GCWGC	3 cut(s)	290, 647, 743
Tsp45I	GTSAC	2 cut(s)	90, 790
TspDTI	ATGAA	4 cut(s)	398, 427, 469, 985
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	2 cut(s)	753, 1017
Tth111I	GACNNNGTC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	3 cut(s)	360, 575, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.