pycom06g16570

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0002286
Physical Location & Seq
Forward (+)
20808150 .. 20811082
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1413 bp
ATGCCACTGTTTGACCCACCTAGGCATGACAGTGCAGAGACAATAAGGAGGGCATTAAATCTTGGAGTGAACGTGAAGATGATTACTGGGGATCAACTGGCAATTGGAAAGGAAACTGGACGTCGCTTGGGGATGGGAACCAATATGTACCCTTCATCTGCTTTGCTAGGACAGGACAAGGATGAGTCAATTGTTGCTTTACCGATTGACGAGCTGATAGAAAAAGCTGACGGCTTTGCTGGGGTTTTCCCAGAGCACAAATACGAGATTGTGAAACGCTTGCAAGCTAGGAAACATATATGTGGAATGACTGGTGATGGAGTAAATGATGCTCCTGCCCTTAAAAAAGCTGATATTGGTATAGCTGTTGCTGATGCAACAGATGCTGCTCGTAGTGCTTCTGATATTGTGCTTACTGAACCTGGCCTTAGTGTCATCATTAGTGCTGTTTTGACCAGTCGGGCAATCTTCCAGAGGATGAAAAATTACACAATATATGCTGTTTCCATCACAATTCGTATCGTGCTTGGCTTCATGTTGCTGGCTCTCATATGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATTATTGCGATCCTCAATGATGGTACTATCATGACAATATCAAAGGACAGGGTTAAACCGTCTCCTCTGCCAGATAGCTGGAAGCTGGCCGAGATTTTTGCAACTGGAATAGTGCTTGGAAGTTACTTGGCAATAATGACTGTGATATTCTTTTGGGCAGCATACAAAACAGACTTCTTCCCAAGAACATTTGGGGTGTCAACCCTTGAGAAAACAGCTAATGATGACTTTCGGAAGCTTGCCTCTGCTATATATCTACAAGTGAGCATTATTAGCCAGGCTCTGATATTTGTTACACGGTCTCGAAGTTGGTCGTTTATTGAGCGTCCTGGACTGTTGCTTGTGGTGGCTTTTATAATAGCTCAGCTGATTGCGACCTTGATTGCGGTCTATGCAAACTGGAGTTTTGCTGCCATTGAGGGGATCGGATGGGGTTGGGCCGGGGTGATCTGGCTTTATAATATAGTCACATATATCCCTCTGGATATCATAAAATTCATGATACGCTACGCTCTGAGTGGGAAGGCTTGGGATCTTCTGATTGAACAGAGGGTTGCTTTCACAAGGCAAAAGGACTTTGGAAAGGAACAACGAGAGCTTCAATGGGCACACGCACAAAGGACATTGCACGGGTTGCAACCACCGGACACCAAGATGTTTACAGAACGAACACATTTCTCAGAACTCAATCAGATCGCCGAAGAAGCCAAAAGAAGAGCTGAGATTGCAAGATTGAGGGAACTCACTACGCTGAAAGGCCACGTAGAATCCGTGGTGAGATTGAAGGGGCTGGACATTGACACGATTCAGCAATCATACACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

471

Amino Acids

52.57

Weight (kDa)

9.02

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 4 - 118 2.5e-09 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 941, 1044
AatII GACGTC 1 cut(s) 124
AciI CCGC 1 cut(s) 971
AclWI GGATC 4 cut(s) 99, 589, 1016, 1125
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 1 cut(s) 1079
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 2 cut(s) 149, 610
AfiI CCNNNNNNNGG 1 cut(s) 1005
AgsI TTSAA 3 cut(s) 1130, 1187, 1369
AjnI CCWGG 3 cut(s) 421, 861, 913
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 3 cut(s) 32, 651, 891
AlwI GGATC 4 cut(s) 99, 589, 1016, 1125
AlwNI CAGNNNCTG 2 cut(s) 386, 868
AoxI GGCC 4 cut(s) 424, 672, 1023, 1342
ApeKI GCWGC 3 cut(s) 386, 743, 995
ApoI RAATTY 1 cut(s) 1079
AspA2I CCTAGG 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 1023
AsuC2I CCSGG 1 cut(s) 1027
AsuHPI GGTGA 3 cut(s) 326, 1042, 1372
AvrII CCTAGG 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 1195
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 373, 755, 982
BccI CCATC 5 cut(s) 127, 311, 515, 599, 1008
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 3 cut(s) 423, 863, 915
BcnI CCSGG 1 cut(s) 1027
BcoDI GTCTC 3 cut(s) 32, 651, 891
BfaI CTAG 3 cut(s) 21, 167, 288
BisI GCNGC 3 cut(s) 387, 744, 996
BlnI CCTAGG 1 cut(s) 20
BlpI GCTNAGC 1 cut(s) 948
BlsI GCNGC 3 cut(s) 388, 745, 997
Bme1390I CCNGG 4 cut(s) 423, 863, 915, 1027
BmgT120I GGNCC 1 cut(s) 1023
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 4 cut(s) 423, 863, 915, 1027
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 3 cut(s) 319, 364, 373
BmuI ACTGGG 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 1006
Bpu1102I GCTNAGC 1 cut(s) 948
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 1 cut(s) 1027
BsaAI YACGTR 1 cut(s) 1348
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 891
BsaJI CCNNGG 3 cut(s) 20, 1026, 1356
BsaWI WCCGGW 1 cut(s) 1228
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 1005
Bse1I ACTGG 7 cut(s) 91, 102, 121, 316, 456, 694, 989
Bse3DI GCAATG 1 cut(s) 1208
BseBI CCWGG 3 cut(s) 423, 863, 915
BseDI CCNNGG 3 cut(s) 20, 1026, 1356
BseGI GGATG 4 cut(s) 138, 187, 483, 1019
BseLI CCNNNNNNNGG 1 cut(s) 1005
BseMI GCAATG 1 cut(s) 1208
BseMII CTCAG 4 cut(s) 962, 1091, 1278, 1296
BseNI ACTGG 7 cut(s) 91, 102, 121, 316, 456, 694, 989
BseRI GAGGAG 1 cut(s) 639
BseSI GKGCMC 1 cut(s) 1195
BseXI GCAGC 3 cut(s) 373, 755, 982
BseYI CCCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 4 cut(s) 426, 674, 1025, 1344
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 1026, 1229
BslI CCNNNNNNNGG 1 cut(s) 1005
BsmAI GTCTC 3 cut(s) 32, 651, 891
BsmBI CGTCTC 1 cut(s) 651
BsnI GGCC 4 cut(s) 426, 674, 1025, 1344
Bso31I GGTCTC 1 cut(s) 891
Bsp1286I GDGCHC 2 cut(s) 258, 1195
Bsp143I GATC 6 cut(s) 91, 594, 1008, 1032, 1117, 1278
Bsp1720I GCTNAGC 1 cut(s) 948
BspACI CCGC 1 cut(s) 971
BspANI GGCC 4 cut(s) 426, 674, 1025, 1344
BspCNI CTCAG 4 cut(s) 961, 1092, 1277, 1297
BspHI TCATGA 2 cut(s) 615, 1083
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 4 cut(s) 99, 589, 1016, 1125
BspQI GCTCTTC 1 cut(s) 1294
BspTNI GGTCTC 1 cut(s) 891
BsrDI GCAATG 1 cut(s) 1208
BsrI ACTGG 7 cut(s) 91, 102, 121, 316, 456, 694, 989
BssECI CCNNGG 3 cut(s) 20, 1026, 1356
BssMI GATC 6 cut(s) 91, 594, 1008, 1032, 1117, 1278
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 3 cut(s) 423, 863, 915
Bst4CI ACNGT 7 cut(s) 9, 32, 645, 727, 885, 921, 1408
Bst6I CTCTTC 1 cut(s) 1294
BstACI GRCGYC 1 cut(s) 121
BstAPI GCANNNNNTGC 2 cut(s) 383, 1219
BstBAI YACGTR 1 cut(s) 1348
BstC8I GCNNGC 5 cut(s) 281, 285, 543, 672, 825
BstDEI CTNAG 5 cut(s) 428, 948, 1100, 1264, 1305
BstDSI CCRYGG 1 cut(s) 1356
BstF5I GGATG 4 cut(s) 138, 187, 483, 1019
BstKTI GATC 6 cut(s) 94, 597, 1011, 1035, 1120, 1281
BstMAI GTCTC 3 cut(s) 32, 651, 891
BstMBI GATC 6 cut(s) 91, 594, 1008, 1032, 1117, 1278
BstMWI GCNNNNNNNGC 7 cut(s) 383, 395, 858, 977, 1219, 1289, 1310
BstNI CCWGG 3 cut(s) 423, 863, 915
BstSCI CCNGG 4 cut(s) 421, 861, 913, 1025
BstSLI GKGCMC 1 cut(s) 1195
BstV1I GCAGC 3 cut(s) 373, 755, 982
BstX2I RGATCY 1 cut(s) 1117
BstXI CCANNNNNNTGG 1 cut(s) 663
BstYI RGATCY 1 cut(s) 1117
BsuRI GGCC 4 cut(s) 426, 674, 1025, 1344
BtgI CCRYGG 1 cut(s) 1356
BtsCI GGATG 4 cut(s) 138, 187, 483, 1019
BtsIMutI CAGTG 2 cut(s) 5, 37
Cac8I GCNNGC 5 cut(s) 281, 285, 543, 672, 825
CaiI CAGNNNCTG 2 cut(s) 386, 868
CciI TCATGA 2 cut(s) 615, 1083
Cfr13I GGNCC 1 cut(s) 1023
CseI GACGC 1 cut(s) 899
Csp6I GTAC 2 cut(s) 148, 609
CviAII CATG 5 cut(s) 26, 535, 577, 616, 1084
CviQI GTAC 2 cut(s) 148, 609
DdeI CTNAG 5 cut(s) 428, 948, 1100, 1264, 1305
DpnI GATC 6 cut(s) 93, 596, 1010, 1034, 1119, 1280
DpnII GATC 6 cut(s) 91, 594, 1008, 1032, 1117, 1278
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 1294
EarI CTCTTC 1 cut(s) 1294
Eco130I CCWWGG 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 891
Eco32I GATATC 1 cut(s) 1072
EcoRII CCWGG 3 cut(s) 421, 861, 913
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 651
FaeI CATG 5 cut(s) 29, 538, 580, 619, 1087
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FatI CATG 5 cut(s) 25, 534, 576, 615, 1083
FauNDI CATATG 1 cut(s) 551
Fnu4HI GCNGC 3 cut(s) 387, 744, 996
FokI GGATG 4 cut(s) 145, 194, 490, 1026
Fsp4HI GCNGC 3 cut(s) 387, 744, 996
FspBI CTAG 3 cut(s) 21, 167, 288
GluI GCNGC 3 cut(s) 387, 744, 996
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 1006
HaeIII GGCC 4 cut(s) 426, 674, 1025, 1344
HapII CCGG 2 cut(s) 1026, 1229
HgaI GACGC 1 cut(s) 899
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 5 cut(s) 29, 538, 580, 619, 1087
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 3 cut(s) 185, 1352, 1390
HpaII CCGG 2 cut(s) 1026, 1229
HphI GGTGA 3 cut(s) 326, 1042, 1372
Hpy166II GTNNAC 3 cut(s) 70, 786, 1245
Hpy188I TCNGA 8 cut(s) 403, 819, 870, 1013, 1101, 1125, 1267, 1278
Hpy188III TCNNGA 5 cut(s) 472, 616, 888, 1067, 1084
Hpy8I GTNNAC 3 cut(s) 70, 786, 1245
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 3 cut(s) 162, 1102, 1363
HpyCH4III ACNGT 7 cut(s) 9, 32, 645, 727, 885, 921, 1408
HpyCH4IV ACGT 3 cut(s) 72, 121, 1347
HpyCH4V TGCA 8 cut(s) 35, 283, 377, 686, 980, 1213, 1222, 1313
HpyF10VI GCNNNNNNNGC 7 cut(s) 383, 395, 858, 977, 1219, 1289, 1310
HpyF3I CTNAG 5 cut(s) 428, 948, 1100, 1264, 1305
HpySE526I ACGT 3 cut(s) 72, 121, 1347
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 5 cut(s) 29, 538, 580, 619, 1087
Kzo9I GATC 6 cut(s) 91, 594, 1008, 1032, 1117, 1278
LguI GCTCTTC 1 cut(s) 1294
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 3 cut(s) 373, 755, 982
LweI GCATC 3 cut(s) 319, 364, 373
MaeI CTAG 3 cut(s) 21, 167, 288
MaeII ACGT 3 cut(s) 72, 121, 1347
MaeIII GTNAC 3 cut(s) 707, 877, 1051
MalI GATC 6 cut(s) 93, 596, 1010, 1034, 1119, 1280
MboI GATC 6 cut(s) 91, 594, 1008, 1032, 1117, 1278
MboII GAAGA 6 cut(s) 88, 460, 754, 1112, 1298, 1311
MfeI CAATTG 2 cut(s) 102, 189
MflI RGATCY 1 cut(s) 1117
MhlI GDGCHC 2 cut(s) 258, 1195
MluCI AATT 5 cut(s) 102, 189, 484, 513, 1079
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 9 cut(s) 42, 468, 608, 660, 838, 997, 1074, 1128, 1314
MseI TTAA 4 cut(s) 56, 342, 639, 1411
MslI CAYNNNNRTG 3 cut(s) 30, 300, 1238
MspA1I CMGCKG 1 cut(s) 952
MspI CCGG 2 cut(s) 1026, 1229
MspR9I CCNGG 4 cut(s) 423, 863, 915, 1027
MunI CAATTG 2 cut(s) 102, 189
MvaI CCWGG 3 cut(s) 423, 863, 915
MwoI GCNNNNNNNGC 7 cut(s) 383, 395, 858, 977, 1219, 1289, 1310
NciI CCSGG 1 cut(s) 1027
NdeI CATATG 1 cut(s) 551
NdeII GATC 6 cut(s) 91, 594, 1008, 1032, 1117, 1278
NlaIII CATG 5 cut(s) 29, 538, 580, 619, 1087
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 700
NmuCI GTSAC 1 cut(s) 1051
PagI TCATGA 2 cut(s) 615, 1083
PciSI GCTCTTC 1 cut(s) 1294
PcsI WCGNNNNNNNCGW 1 cut(s) 1353
PfeI GAWTC 2 cut(s) 1352, 1390
PfoI TCCNGGA 1 cut(s) 913
PkrI GCNGC 3 cut(s) 388, 745, 997
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 1348
PsiI TTATAA 2 cut(s) 941, 1044
Psp6I CCWGG 3 cut(s) 421, 861, 913
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 421, 861, 913
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 1023
PstNI CAGNNNCTG 2 cut(s) 386, 868
PsuI RGATCY 1 cut(s) 1117
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 2 cut(s) 149, 610
RsaNI GTAC 2 cut(s) 148, 609
RseI CAYNNNNRTG 3 cut(s) 30, 300, 1238
SapI GCTCTTC 1 cut(s) 1294
SaqAI TTAA 4 cut(s) 56, 342, 639, 1411
SatI GCNGC 3 cut(s) 387, 744, 996
Sau3AI GATC 6 cut(s) 91, 594, 1008, 1032, 1117, 1278
Sau96I GGNCC 1 cut(s) 1023
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 4 cut(s) 423, 863, 915, 1027
SduI GDGCHC 2 cut(s) 258, 1195
SfaNI GCATC 3 cut(s) 319, 364, 373
SmiMI CAYNNNNRTG 3 cut(s) 30, 300, 1238
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 5 cut(s) 102, 189, 484, 513, 1079
SsiI CCGC 1 cut(s) 971
SspMI CTAG 3 cut(s) 21, 167, 288
StyD4I CCNGG 4 cut(s) 421, 861, 913, 1025
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 7 cut(s) 9, 32, 645, 727, 885, 921, 1408
TaiI ACGT 3 cut(s) 75, 124, 1350
TaqI TCGA 1 cut(s) 889
TasI AATT 5 cut(s) 102, 189, 484, 513, 1079
TfiI GAWTC 2 cut(s) 1352, 1390
Tru1I TTAA 4 cut(s) 56, 342, 639, 1411
Tru9I TTAA 4 cut(s) 56, 342, 639, 1411
TscAI CASTG 2 cut(s) 12, 37
TseFI GTSAC 1 cut(s) 1051
TseI GCWGC 3 cut(s) 386, 743, 995
Tsp45I GTSAC 1 cut(s) 1051
TspDTI ATGAA 5 cut(s) 144, 494, 523, 565, 1072
TspGWI ACGGA 1 cut(s) 1345
TspRI CASTG 2 cut(s) 12, 37
XapI RAATTY 1 cut(s) 1079
XmaJI CCTAGG 1 cut(s) 20
XspI CTAG 3 cut(s) 21, 167, 288
ZraI GACGTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.