ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48650 AT1G48650 |
| fragaria_vesca | FvH4_5g16860 |
| malus_domestica | MD06G1222500.v1.1 MD14G1231600.v1.1 |
| prunus_persica | Prupe.5G227100_v2.0.a1 |
| pyrus_communis | pycom06g19810 pycom06g19820 pycom14g19280 |
| rosa_chinensis | RchiOBHm_Chr7g0179211 |
| rosa_laevigata | RLG00000005374 |
| rosa_multiflora | Rmu_sc0009798.1_g000005 Rmu_sc0021799.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00274220 |
| rosa_rugosa | Rorug06G0422200 |
| rosa_samantha | Rh7BG021500 |
| rosa_wichuraiana | Rw7G001770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 261 |
| Acc65I | GGTACC | 1 cut(s) | 183 |
| AccB1I | GGYRCC | 2 cut(s) | 183, 331 |
| AccII | CGCG | 2 cut(s) | 102, 244 |
| AcoI | YGGCCR | 1 cut(s) | 665 |
| AcsI | RAATTY | 3 cut(s) | 349, 760, 873 |
| AcvI | CACGTG | 2 cut(s) | 250, 264 |
| AcyI | GRCGYC | 2 cut(s) | 258, 381 |
| AfaI | GTAC | 5 cut(s) | 8, 99, 185, 374, 1076 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 22, 208, 219, 414 |
| AgsI | TTSAA | 2 cut(s) | 953, 1097 |
| AjiI | CACGTC | 1 cut(s) | 542 |
| AjnI | CCWGG | 3 cut(s) | 21, 267, 375 |
| AluBI | AGCT | 7 cut(s) | 134, 292, 316, 357, 891, 1004, 1100 |
| AluI | AGCT | 7 cut(s) | 134, 292, 316, 357, 891, 1004, 1100 |
| Alw26I | GTCTC | 3 cut(s) | 97, 426, 1036 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 316 |
| Ama87I | CYCGRG | 1 cut(s) | 279 |
| AoxI | GGCC | 3 cut(s) | 143, 210, 665 |
| ApeKI | GCWGC | 4 cut(s) | 151, 310, 313, 832 |
| ApoI | RAATTY | 3 cut(s) | 349, 760, 873 |
| Asp718I | GGTACC | 1 cut(s) | 183 |
| AspLEI | GCGC | 1 cut(s) | 429 |
| AspS9I | GGNCC | 1 cut(s) | 211 |
| AsuC2I | CCSGG | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 1 cut(s) | 101 |
| AvaI | CYCGRG | 1 cut(s) | 279 |
| BanI | GGYRCC | 2 cut(s) | 183, 331 |
| BanII | GRGCYC | 1 cut(s) | 843 |
| BbrPI | CACGTG | 2 cut(s) | 250, 264 |
| BbvCI | CCTCAGC | 2 cut(s) | 317, 630 |
| BbvI | GCAGC | 4 cut(s) | 138, 322, 325, 844 |
| BccI | CCATC | 4 cut(s) | 120, 465, 571, 809 |
| BceAI | ACGGC | 3 cut(s) | 130, 319, 576 |
| BciT130I | CCWGG | 3 cut(s) | 23, 269, 377 |
| BclI | TGATCA | 1 cut(s) | 550 |
| BcnI | CCSGG | 1 cut(s) | 214 |
| BcoDI | GTCTC | 3 cut(s) | 97, 426, 1036 |
| BfaI | CTAG | 1 cut(s) | 603 |
| BfoI | RGCGCY | 1 cut(s) | 430 |
| BisI | GCNGC | 7 cut(s) | 152, 242, 285, 311, 314, 665, 833 |
| BlsI | GCNGC | 7 cut(s) | 153, 243, 286, 312, 315, 666, 834 |
| Bme1390I | CCNGG | 4 cut(s) | 23, 214, 269, 377 |
| BmeT110I | CYCGRG | 1 cut(s) | 279 |
| BmgBI | CACGTC | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 1 cut(s) | 211 |
| BmiI | GGNNCC | 3 cut(s) | 185, 333, 840 |
| BmrFI | CCNGG | 4 cut(s) | 23, 214, 269, 377 |
| BmsI | GCATC | 7 cut(s) | 152, 281, 394, 703, 850, 936, 979 |
| BpmI | CTGGAG | 1 cut(s) | 863 |
| Bpu10I | CCTNAGC | 2 cut(s) | 317, 630 |
| BpuMI | CCSGG | 1 cut(s) | 214 |
| Bsa29I | ATCGAT | 1 cut(s) | 1105 |
| BsaAI | YACGTR | 3 cut(s) | 130, 250, 264 |
| BsaBI | GATNNNNATC | 2 cut(s) | 549, 717 |
| BsaHI | GRCGYC | 2 cut(s) | 258, 381 |
| BsaJI | CCNNGG | 3 cut(s) | 22, 754, 864 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 22, 208, 219, 414 |
| Bse118I | RCCGGY | 1 cut(s) | 180 |
| Bse1I | ACTGG | 1 cut(s) | 570 |
| Bse8I | GATNNNNATC | 2 cut(s) | 549, 717 |
| BseBI | CCWGG | 3 cut(s) | 23, 269, 377 |
| BseCI | ATCGAT | 1 cut(s) | 1105 |
| BseDI | CCNNGG | 3 cut(s) | 22, 754, 864 |
| BseGI | GGATG | 3 cut(s) | 167, 272, 582 |
| BseJI | GATNNNNATC | 2 cut(s) | 549, 717 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 22, 208, 219, 414 |
| BseMII | CTCAG | 5 cut(s) | 308, 437, 644, 1080, 1085 |
| BseNI | ACTGG | 1 cut(s) | 570 |
| BseRI | GAGGAG | 2 cut(s) | 334, 410 |
| BseXI | GCAGC | 4 cut(s) | 138, 322, 325, 844 |
| Bsh1236I | CGCG | 2 cut(s) | 102, 244 |
| BshFI | GGCC | 3 cut(s) | 145, 212, 667 |
| BshNI | GGYRCC | 2 cut(s) | 183, 331 |
| BshVI | ATCGAT | 1 cut(s) | 1105 |
| BsiHKCI | CYCGRG | 1 cut(s) | 279 |
| BsiSI | CCGG | 4 cut(s) | 181, 209, 214, 1035 |
| BslFI | GGGAC | 2 cut(s) | 37, 269 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 22, 208, 219, 414 |
| BsmAI | GTCTC | 3 cut(s) | 97, 426, 1036 |
| BsmBI | CGTCTC | 1 cut(s) | 426 |
| BsmFI | GGGAC | 2 cut(s) | 37, 269 |
| BsmI | GAATGC | 1 cut(s) | 229 |
| BsnI | GGCC | 3 cut(s) | 145, 212, 667 |
| BsoBI | CYCGRG | 1 cut(s) | 279 |
| Bsp1286I | GDGCHC | 1 cut(s) | 843 |
| Bsp143I | GATC | 4 cut(s) | 550, 649, 785, 1102 |
| Bsp19I | CCATGG | 1 cut(s) | 864 |
| BspANI | GGCC | 3 cut(s) | 145, 212, 667 |
| BspCNI | CTCAG | 5 cut(s) | 309, 436, 643, 1081, 1084 |
| BspDI | ATCGAT | 1 cut(s) | 1105 |
| BspFNI | CGCG | 2 cut(s) | 102, 244 |
| BspLI | GGNNCC | 3 cut(s) | 185, 333, 840 |
| BspT107I | GGYRCC | 2 cut(s) | 183, 331 |
| BsrFI | RCCGGY | 1 cut(s) | 180 |
| BsrI | ACTGG | 1 cut(s) | 570 |
| BssAI | RCCGGY | 1 cut(s) | 180 |
| BssECI | CCNNGG | 3 cut(s) | 22, 754, 864 |
| BssMI | GATC | 4 cut(s) | 550, 649, 785, 1102 |
| BssNI | GRCGYC | 2 cut(s) | 258, 381 |
| BssT1I | CCWWGG | 2 cut(s) | 754, 864 |
| Bst2UI | CCWGG | 3 cut(s) | 23, 269, 377 |
| Bst4CI | ACNGT | 2 cut(s) | 794, 996 |
| Bst6I | CTCTTC | 1 cut(s) | 23 |
| BstACI | GRCGYC | 2 cut(s) | 258, 381 |
| BstBAI | YACGTR | 3 cut(s) | 130, 250, 264 |
| BstC8I | GCNNGC | 4 cut(s) | 229, 571, 893, 972 |
| BstDEI | CTNAG | 5 cut(s) | 317, 423, 630, 1071, 1089 |
| BstDSI | CCRYGG | 1 cut(s) | 864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 20 |
| BstF5I | GGATG | 3 cut(s) | 167, 272, 582 |
| BstFNI | CGCG | 2 cut(s) | 102, 244 |
| BstH2I | RGCGCY | 1 cut(s) | 430 |
| BstHHI | GCGC | 1 cut(s) | 429 |
| BstKTI | GATC | 4 cut(s) | 553, 652, 788, 1105 |
| BstMAI | GTCTC | 3 cut(s) | 97, 426, 1036 |
| BstMBI | GATC | 4 cut(s) | 550, 649, 785, 1102 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 151, 310, 838, 907, 928 |
| BstNI | CCWGG | 3 cut(s) | 23, 269, 377 |
| BstSCI | CCNGG | 4 cut(s) | 21, 212, 267, 375 |
| BstUI | CGCG | 2 cut(s) | 102, 244 |
| BstV1I | GCAGC | 4 cut(s) | 138, 322, 325, 844 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 437 |
| Bsu15I | ATCGAT | 1 cut(s) | 1105 |
| BsuRI | GGCC | 3 cut(s) | 145, 212, 667 |
| BsuTUI | ATCGAT | 1 cut(s) | 1105 |
| BtgI | CCRYGG | 1 cut(s) | 864 |
| BtgZI | GCGATG | 1 cut(s) | 98 |
| BtrI | CACGTC | 1 cut(s) | 542 |
| BtsCI | GGATG | 3 cut(s) | 167, 272, 582 |
| BtsIMutI | CAGTG | 2 cut(s) | 563, 992 |
| Cac8I | GCNNGC | 4 cut(s) | 229, 571, 893, 972 |
| CaiI | CAGNNNCTG | 1 cut(s) | 316 |
| CfoI | GCGC | 1 cut(s) | 429 |
| Cfr10I | RCCGGY | 1 cut(s) | 180 |
| Cfr13I | GGNCC | 1 cut(s) | 211 |
| ClaI | ATCGAT | 1 cut(s) | 1105 |
| CseI | GACGC | 2 cut(s) | 233, 389 |
| Csp6I | GTAC | 5 cut(s) | 7, 98, 184, 373, 1075 |
| CviAII | CATG | 4 cut(s) | 49, 169, 484, 865 |
| CviQI | GTAC | 5 cut(s) | 7, 98, 184, 373, 1075 |
| DdeI | CTNAG | 5 cut(s) | 317, 423, 630, 1071, 1089 |
| DpnI | GATC | 4 cut(s) | 552, 651, 787, 1104 |
| DpnII | GATC | 4 cut(s) | 550, 649, 785, 1102 |
| EaeI | YGGCCR | 1 cut(s) | 665 |
| Eam1104I | CTCTTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 1 cut(s) | 23 |
| EciI | GGCGGA | 1 cut(s) | 302 |
| Eco130I | CCWWGG | 2 cut(s) | 754, 864 |
| Eco24I | GRGCYC | 1 cut(s) | 843 |
| Eco72I | CACGTG | 2 cut(s) | 250, 264 |
| Eco88I | CYCGRG | 1 cut(s) | 279 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 20 |
| EcoRII | CCWGG | 3 cut(s) | 21, 267, 375 |
| EcoT14I | CCWWGG | 2 cut(s) | 754, 864 |
| EcoT38I | GRGCYC | 1 cut(s) | 843 |
| ErhI | CCWWGG | 2 cut(s) | 754, 864 |
| Esp3I | CGTCTC | 1 cut(s) | 426 |
| FaeI | CATG | 4 cut(s) | 52, 172, 487, 868 |
| FaqI | GGGAC | 2 cut(s) | 37, 269 |
| FatI | CATG | 4 cut(s) | 48, 168, 483, 864 |
| FbaI | TGATCA | 1 cut(s) | 550 |
| Fnu4HI | GCNGC | 7 cut(s) | 152, 242, 285, 311, 314, 665, 833 |
| FokI | GGATG | 3 cut(s) | 174, 259, 589 |
| FriOI | GRGCYC | 1 cut(s) | 843 |
| Fsp4HI | GCNGC | 7 cut(s) | 152, 242, 285, 311, 314, 665, 833 |
| FspBI | CTAG | 1 cut(s) | 603 |
| GlaI | GCGC | 1 cut(s) | 428 |
| GluI | GCNGC | 7 cut(s) | 152, 242, 285, 311, 314, 665, 833 |
| GsuI | CTGGAG | 1 cut(s) | 863 |
| HaeII | RGCGCY | 1 cut(s) | 430 |
| HaeIII | GGCC | 3 cut(s) | 145, 212, 667 |
| HapII | CCGG | 4 cut(s) | 181, 209, 214, 1035 |
| HgaI | GACGC | 2 cut(s) | 233, 389 |
| HhaI | GCGC | 1 cut(s) | 429 |
| Hin1I | GRCGYC | 2 cut(s) | 258, 381 |
| Hin1II | CATG | 4 cut(s) | 52, 172, 487, 868 |
| Hin6I | GCGC | 1 cut(s) | 427 |
| HinP1I | GCGC | 1 cut(s) | 427 |
| HincII | GTYRAC | 1 cut(s) | 480 |
| HindII | GTYRAC | 1 cut(s) | 480 |
| HindIII | AAGCTT | 1 cut(s) | 889 |
| HinfI | GANTC | 3 cut(s) | 398, 926, 1085 |
| HpaI | GTTAAC | 1 cut(s) | 480 |
| HpaII | CCGG | 4 cut(s) | 181, 209, 214, 1035 |
| HphI | GGTGA | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 1 cut(s) | 480 |
| Hpy188I | TCNGA | 5 cut(s) | 38, 403, 769, 1012, 1090 |
| Hpy188III | TCNNGA | 3 cut(s) | 603, 653, 783 |
| Hpy8I | GTNNAC | 1 cut(s) | 480 |
| Hpy99I | CGWCG | 1 cut(s) | 151 |
| HpyAV | CCTTC | 1 cut(s) | 929 |
| HpyCH4III | ACNGT | 2 cut(s) | 794, 996 |
| HpyCH4IV | ACGT | 5 cut(s) | 129, 249, 258, 263, 541 |
| HpyCH4V | TGCA | 4 cut(s) | 895, 901, 974, 992 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 151, 310, 838, 907, 928 |
| HpyF3I | CTNAG | 5 cut(s) | 317, 423, 630, 1071, 1089 |
| HpySE526I | ACGT | 5 cut(s) | 129, 249, 258, 263, 541 |
| Hsp92I | GRCGYC | 2 cut(s) | 258, 381 |
| Hsp92II | CATG | 4 cut(s) | 52, 172, 487, 868 |
| HspAI | GCGC | 1 cut(s) | 427 |
| KpnI | GGTACC | 1 cut(s) | 187 |
| Ksp22I | TGATCA | 1 cut(s) | 550 |
| KspAI | GTTAAC | 1 cut(s) | 480 |
| Kzo9I | GATC | 4 cut(s) | 550, 649, 785, 1102 |
| LmnI | GCTCC | 4 cut(s) | 170, 211, 289, 838 |
| Lsp1109I | GCAGC | 4 cut(s) | 138, 322, 325, 844 |
| LweI | GCATC | 7 cut(s) | 152, 281, 394, 703, 850, 936, 979 |
| MaeI | CTAG | 1 cut(s) | 603 |
| MaeII | ACGT | 5 cut(s) | 129, 249, 258, 263, 541 |
| MaeIII | GTNAC | 2 cut(s) | 245, 259 |
| MalI | GATC | 4 cut(s) | 552, 651, 787, 1104 |
| MboI | GATC | 4 cut(s) | 550, 649, 785, 1102 |
| MboII | GAAGA | 2 cut(s) | 10, 482 |
| MhlI | GDGCHC | 1 cut(s) | 843 |
| MluCI | AATT | 7 cut(s) | 217, 349, 410, 512, 637, 760, 873 |
| MlyI | GAGTC | 1 cut(s) | 407 |
| MseI | TTAA | 2 cut(s) | 479, 998 |
| MslI | CAYNNNNRTG | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 2 cut(s) | 316, 883 |
| MspI | CCGG | 4 cut(s) | 181, 209, 214, 1035 |
| MspR9I | CCNGG | 4 cut(s) | 23, 214, 269, 377 |
| Mva1269I | GAATGC | 1 cut(s) | 229 |
| MvaI | CCWGG | 3 cut(s) | 23, 269, 377 |
| MvnI | CGCG | 2 cut(s) | 102, 244 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 151, 310, 838, 907, 928 |
| NciI | CCSGG | 1 cut(s) | 214 |
| NcoI | CCATGG | 1 cut(s) | 864 |
| NdeII | GATC | 4 cut(s) | 550, 649, 785, 1102 |
| NlaIII | CATG | 4 cut(s) | 52, 172, 487, 868 |
| NlaIV | GGNNCC | 3 cut(s) | 185, 333, 840 |
| NmuCI | GTSAC | 2 cut(s) | 245, 259 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 255, 332 |
| PctI | GAATGC | 1 cut(s) | 229 |
| PfeI | GAWTC | 2 cut(s) | 926, 1085 |
| PkrI | GCNGC | 7 cut(s) | 153, 243, 286, 312, 315, 666, 834 |
| PleI | GAGTC | 1 cut(s) | 406 |
| PmaCI | CACGTG | 2 cut(s) | 250, 264 |
| PmlI | CACGTG | 2 cut(s) | 250, 264 |
| PpsI | GAGTC | 1 cut(s) | 406 |
| Ppu21I | YACGTR | 3 cut(s) | 130, 250, 264 |
| Psp6I | CCWGG | 3 cut(s) | 21, 267, 375 |
| PspCI | CACGTG | 2 cut(s) | 250, 264 |
| PspGI | CCWGG | 3 cut(s) | 21, 267, 375 |
| PspN4I | GGNNCC | 3 cut(s) | 185, 333, 840 |
| PspPI | GGNCC | 1 cut(s) | 211 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 167, 199 |
| PstNI | CAGNNNCTG | 1 cut(s) | 316 |
| PvuII | CAGCTG | 1 cut(s) | 316 |
| RsaI | GTAC | 5 cut(s) | 8, 99, 185, 374, 1076 |
| RsaNI | GTAC | 5 cut(s) | 7, 98, 184, 373, 1075 |
| RseI | CAYNNNNRTG | 1 cut(s) | 47 |
| SaqAI | TTAA | 2 cut(s) | 479, 998 |
| SatI | GCNGC | 7 cut(s) | 152, 242, 285, 311, 314, 665, 833 |
| Sau3AI | GATC | 4 cut(s) | 550, 649, 785, 1102 |
| Sau96I | GGNCC | 1 cut(s) | 211 |
| SchI | GAGTC | 1 cut(s) | 407 |
| ScrFI | CCNGG | 4 cut(s) | 23, 214, 269, 377 |
| SduI | GDGCHC | 1 cut(s) | 843 |
| SfaNI | GCATC | 7 cut(s) | 152, 281, 394, 703, 850, 936, 979 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 47 |
| Sse9I | AATT | 7 cut(s) | 217, 349, 410, 512, 637, 760, 873 |
| SspI | AATATT | 1 cut(s) | 599 |
| SspMI | CTAG | 1 cut(s) | 603 |
| StyD4I | CCNGG | 4 cut(s) | 21, 212, 267, 375 |
| StyI | CCWWGG | 2 cut(s) | 754, 864 |
| TaaI | ACNGT | 2 cut(s) | 794, 996 |
| TaiI | ACGT | 5 cut(s) | 132, 252, 261, 266, 544 |
| TaqI | TCGA | 3 cut(s) | 443, 521, 1105 |
| TasI | AATT | 7 cut(s) | 217, 349, 410, 512, 637, 760, 873 |
| TatI | WGTACW | 1 cut(s) | 1074 |
| TauI | GCSGC | 3 cut(s) | 244, 287, 667 |
| TfiI | GAWTC | 2 cut(s) | 926, 1085 |
| Tru1I | TTAA | 2 cut(s) | 479, 998 |
| Tru9I | TTAA | 2 cut(s) | 479, 998 |
| TscAI | CASTG | 2 cut(s) | 570, 999 |
| TseFI | GTSAC | 2 cut(s) | 245, 259 |
| TseI | GCWGC | 4 cut(s) | 151, 310, 313, 832 |
| Tsp45I | GTSAC | 2 cut(s) | 245, 259 |
| TspDTI | ATGAA | 2 cut(s) | 477, 689 |
| TspRI | CASTG | 2 cut(s) | 570, 999 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 20 |
| XapI | RAATTY | 3 cut(s) | 349, 760, 873 |
| XbaI | TCTAGA | 1 cut(s) | 602 |
| XspI | CTAG | 1 cut(s) | 603 |
| ZraI | GACGTC | 1 cut(s) | 259 |